From d516c65fec24289c68d42c810d506b9540166bf5 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Tue, 6 Feb 2024 11:12:20 +0000
Subject: [PATCH 1/4] Add check manifest to CI

---
 .github/workflows/test_and_deploy.yml | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 26c5c9f3..8ba141dc 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -22,8 +22,14 @@ jobs:
     steps:
       - uses: neuroinformatics-unit/actions/lint@v2
 
+  manifest:
+    name: Check Manifest
+    runs-on: ubuntu-latest
+    steps:
+      - uses: neuroinformatics-unit/actions/check_manifest@v2
+
   test:
-    needs: [linting]
+    needs: [linting, manifest]
     name: ${{ matrix.os }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
     strategy:

From c0ecf92bb1e0a3abd6e4938d248370ec7496e419 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Tue, 6 Feb 2024 11:17:26 +0000
Subject: [PATCH 2/4] Tidy some ignores up

---
 .gitignore                                        |   4 ++--
 .../__pycache__/__init__.cpython-37.pyc           | Bin 381 -> 0 bytes
 2 files changed, 2 insertions(+), 2 deletions(-)
 delete mode 100644 brainrender/atlas_specific/__pycache__/__init__.cpython-37.pyc

diff --git a/.gitignore b/.gitignore
index 18169a56..509fb15e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -9,9 +9,9 @@ __pycache__
 .ipynb_checkpoints
 .pytest_cache/*
 .pytest_cache/
-__pycache__/*
+__pycache__/**
 __pycache__/
-*/__pycache__
+**/__pycache__
 brainrender/atlas_specific/gene_expression/__pycache__
 brainrender/atlas_specific/gene_expression/__pycache__/*
 brainrender/atlas_specific/__pycache__
diff --git a/brainrender/atlas_specific/__pycache__/__init__.cpython-37.pyc b/brainrender/atlas_specific/__pycache__/__init__.cpython-37.pyc
deleted file mode 100644
index 28abdb7efa1a6018a9836e469003c8ec222da47d..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

literal 381
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zbo`{!<Xapn)tlo5dc1z_2$^l`FCXsY@TA5790-fXS&t0smVmGp!+o0M(-jrg6Z#4%
zD}pN+xWm$}ZJ8C$p@-1`<5gBm0N`H&4UqZSUSI5>P%O{i6eTjo_OmR{&61JW+@Jv2
zvNcz2**E9|n}rRx{mRS-;Kvcz>?E82@CLwo8vwHIWpglX+NyUr(~`sk^ijM89L#uy


From 8cc675f70c243405a322ca2f5210de997ec57cad Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Tue, 6 Feb 2024 11:19:59 +0000
Subject: [PATCH 3/4] Update the manifest accordingly

---
 MANIFEST.in    | 14 ++++++++++----
 pyproject.toml |  2 +-
 2 files changed, 11 insertions(+), 5 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 40cd0f87..a6bfd248 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,6 +1,12 @@
+exclude .pre-commit-config.yaml
+
 global-include *.svg
 
-recursive-exclude tests *
-recursive-exclude examples *
-recursive-exclude imgs *
-recursive-exclude videos *
+prune tests
+prune examples
+prune imgs
+prune videos
+
+graft brainrender
+
+global-exclude */__pycache__/*
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index 614e4b53..39e657ec 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -74,7 +74,7 @@ include-package-data = true
 
 [tool.setuptools.packages.find]
 include = ["brainrender*"]
-exclude = ["tests", "docs*"]
+exclude = ["tests*", "docs*", "examples*", "imgs*"]
 
 
 [tool.pytest.ini_options]

From 957074223d8786535e4bc7744fc18ff0778d2931 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Tue, 6 Feb 2024 11:20:52 +0000
Subject: [PATCH 4/4] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 MANIFEST.in | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index a6bfd248..78b4df9e 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -9,4 +9,4 @@ prune videos
 
 graft brainrender
 
-global-exclude */__pycache__/*
\ No newline at end of file
+global-exclude */__pycache__/*