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FUNGuildR (development version)

  • NEMAGuild is (temporarily?) offline.
  • funguild_assign() and get_funguild_db() now return additional columns "guid" and "mbNumber" from the new version of FUNGuild
  • get_funguild_db() now returns the database as-is, without changing spaces to underscores in the species name, or adding the search key. The current funguild_assign() should still work with old locally cached databases, but older versions will not work with new cached databases.
  • Species names in the taxon column of funguild_assign() output now have a space instead of an underscore between the genus and species epithets.
  • Added function funguild_query() to submit queries to the FUNGuild web API. It also works with a locally cached database.
  • funguild_assign() now accepts Sintax ("k:", "p:"...) or Unite ("k__, "p__", ...) style taxonomy strings.
  • funguild_assign() now works in many cases when the Taxonomy column contains only genus or species names. The most complete results will still be achieved when the whole taxonomy string is included.

FUNGuildR 0.2.0

  • Update default FUNGuild URL to use new version of FUNguild database (as in Guilds_v1.1.py) and correctly parse new database format.
  • Added a tax_col argument to funguild_assign/nemaguild_assign to allow use of a taxonomy column with a name other than "Taxonomy".
  • Fixed warning when using tidyr >= 1.0.0
  • Added a NEWS.md file to track changes to the package.