From 77fd100e26b9320a04955b32e59d7c24fa1e60e3 Mon Sep 17 00:00:00 2001 From: brendanf Date: Wed, 3 Mar 2021 08:15:19 +0100 Subject: [PATCH] add VSEARCH to github actions environment (this will bump test coverage...) --- .github/workflows/check-bioc.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 789cf3e..7e17786 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -118,6 +118,7 @@ jobs: sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))') echo $sysreqs sudo -s eval "$sysreqs" + sudo apt-get install -y vsearch - name: Install macOS system dependencies if: matrix.config.os == 'macOS-latest' @@ -136,6 +137,9 @@ jobs: ## For installing usethis's dependency gert brew install libgit2 + ## For testing + brew install vsearch + - name: Install Windows system dependencies if: runner.os == 'Windows' run: |