From 18e62d71c6996998f195066aabbc83100562433c Mon Sep 17 00:00:00 2001 From: Laura Gauthier Date: Wed, 15 Aug 2018 13:29:27 -0400 Subject: [PATCH] Add option to recalculate the allele fraction based on AD instead of the Bayesian estimate --- .../walkers/annotator/AlleleFraction.java | 62 +++ .../annotator/DepthPerAlleleBySample.java | 2 +- .../walkers/mutect/M2ArgumentCollection.java | 5 + .../mutect/SomaticGenotypingEngine.java | 13 +- .../mutect/Mutect2IntegrationTest.java | 30 ++ .../large/mutect/highDPMTsnippet.bai | 3 + .../large/mutect/highDPMTsnippet.bam | 3 + .../expected/testWithAllAnnotations.vcf | 503 +++++++++--------- 8 files changed, 364 insertions(+), 257 deletions(-) create mode 100644 src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AlleleFraction.java create mode 100644 src/test/resources/large/mutect/highDPMTsnippet.bai create mode 100644 src/test/resources/large/mutect/highDPMTsnippet.bam diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AlleleFraction.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AlleleFraction.java new file mode 100644 index 00000000000..44e616e74b5 --- /dev/null +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AlleleFraction.java @@ -0,0 +1,62 @@ +package org.broadinstitute.hellbender.tools.walkers.annotator; + +import htsjdk.variant.variantcontext.*; +import htsjdk.variant.vcf.VCFConstants; +import htsjdk.variant.vcf.VCFFormatHeaderLine; +import htsjdk.variant.vcf.VCFStandardHeaderLines; +import org.broadinstitute.barclay.help.DocumentedFeature; +import org.broadinstitute.hellbender.engine.ReferenceContext; +import org.broadinstitute.hellbender.utils.MathUtils; +import org.broadinstitute.hellbender.utils.Utils; +import org.broadinstitute.hellbender.utils.genotyper.ReadLikelihoods; +import org.broadinstitute.hellbender.utils.help.HelpConstants; +import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; +import org.broadinstitute.hellbender.utils.variant.GATKVCFHeaderLines; + +import java.util.*; + +/** + * Created by gauthier on 8/15/18. + * Bug Laura to fill this in + */ +@DocumentedFeature(groupName= HelpConstants.DOC_CAT_ANNOTATORS, groupSummary=HelpConstants.DOC_CAT_ANNOTATORS_SUMMARY, summary="Variant allele fraction for a genotype") + +public final class AlleleFraction extends GenotypeAnnotation implements StandardMutectAnnotation { + @Override + public void annotate(final ReferenceContext ref, + final VariantContext vc, + final Genotype g, + final GenotypeBuilder gb, + final ReadLikelihoods likelihoods) { + Utils.nonNull(gb, "gb is null"); + Utils.nonNull(vc, "vc is null"); + + final GenotypesContext genotypes = vc.getGenotypes(); + if ( g == null || !g.isCalled() || g.hasExtendedAttribute(getKeyNames().get(0))) { //don't overwrite AF based on Bayesian estimate if it already exists + return; + } + + for ( final Genotype genotype : genotypes ) { + if ( genotype.hasAD() ) { + final int[] AD = genotype.getAD(); + final double[] allAlleleFractions = MathUtils.normalizeFromRealSpace(Arrays.stream(AD).mapToDouble(x -> x*1.0).toArray()); + gb.attribute(getKeyNames().get(0), Arrays.copyOfRange(allAlleleFractions, 1, allAlleleFractions.length)); //omit the first entry of the array corresponding to the reference + } + // if there is no AD value calculate it now using likelihoods + else if (likelihoods != null) { + DepthPerAlleleBySample adCalc = new DepthPerAlleleBySample(); + final int[] AD = adCalc.annotateWithLikelihoods(vc, g, new LinkedHashSet<>(vc.getAlleles()), likelihoods); + final double[] allAlleleFractions = MathUtils.normalizeFromRealSpace(Arrays.stream(AD).mapToDouble(x -> x*1.0).toArray()); + gb.attribute(getKeyNames().get(0), Arrays.copyOfRange(allAlleleFractions, 1, allAlleleFractions.length)); //omit the first entry of the array corresponding to the reference + } + } + } + + @Override + public List getKeyNames() { return Collections.singletonList(GATKVCFConstants.ALLELE_FRACTION_KEY);} + + @Override + public List getDescriptions() { + return Collections.singletonList(GATKVCFHeaderLines.getFormatLine(getKeyNames().get(0))); + } +} diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerAlleleBySample.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerAlleleBySample.java index dc4cccc6a1b..836ccef271f 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerAlleleBySample.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerAlleleBySample.java @@ -95,7 +95,7 @@ private int[] annotateWithPileup(final VariantContext vc, List pi return counts; } - private int[] annotateWithLikelihoods(VariantContext vc, Genotype g, Set alleles, ReadLikelihoods likelihoods) { + protected int[] annotateWithLikelihoods(VariantContext vc, Genotype g, Set alleles, ReadLikelihoods likelihoods) { final Map alleleCounts = new LinkedHashMap<>(); for ( final Allele allele : vc.getAlleles() ) { diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/M2ArgumentCollection.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/M2ArgumentCollection.java index eff28f11659..c7f8fa2ca53 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/M2ArgumentCollection.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/M2ArgumentCollection.java @@ -36,6 +36,7 @@ public class M2ArgumentCollection extends AssemblyBasedCallerArgumentCollection public static final String MAX_MNP_DISTANCE_SHORT_NAME = "mnp-dist"; public static final String IGNORE_ITR_ARTIFACTS_LONG_NAME = "ignore-itr-artifacts"; public static final String ARTIFACT_PRIOR_TABLE_NAME = "orientation-bias-artifact-priors"; + public static final String GET_AF_FROM_AD_LONG_NAME = "get-af-from-ad"; public static final double DEFAULT_AF_FOR_TUMOR_ONLY_CALLING = 5e-8; public static final double DEFAULT_AF_FOR_TUMOR_NORMAL_CALLING = 1e-6; @@ -164,4 +165,8 @@ public double getDefaultAlleleFrequency() { @Argument(fullName= IGNORE_ITR_ARTIFACTS_LONG_NAME, doc="Turn off read transformer that clips artifacts associated with end repair insertions near inverted tandem repeats.", optional = true) public boolean dontClipITRArtifacts = false; + @Advanced + @Argument(fullName = GET_AF_FROM_AD_LONG_NAME, doc="Use allelic depth to calculate tumor allele fraction; recommended for mitochondrial applications", optional = true) + public boolean calculateAFfromAD = false; + } diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/SomaticGenotypingEngine.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/SomaticGenotypingEngine.java index 134a1c59184..ee15b5091c2 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/SomaticGenotypingEngine.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/SomaticGenotypingEngine.java @@ -235,10 +235,13 @@ private void addGenotypes(final LikelihoodMatrix tumorLog10Matrix, final Optional> normalLog10Matrix, final VariantContextBuilder callVcb) { final double[] tumorAlleleCounts = getEffectiveCounts(tumorLog10Matrix); - final Genotype tumorGenotype = new GenotypeBuilder(tumorSample, tumorLog10Matrix.alleles()) - .AD(Arrays.stream(tumorAlleleCounts).mapToInt(x -> (int) FastMath.round(x)).toArray()) - .attribute(GATKVCFConstants.ALLELE_FRACTION_KEY, getAltAlleleFractions(tumorAlleleCounts)) - .make(); + final int[] adArray = Arrays.stream(tumorAlleleCounts).mapToInt(x -> (int) FastMath.round(x)).toArray(); + final int dp = (int) MathUtils.sum(adArray); + final GenotypeBuilder gb = new GenotypeBuilder(tumorSample, tumorLog10Matrix.alleles()); + if (!MTAC.calculateAFfromAD) { + gb.attribute(GATKVCFConstants.ALLELE_FRACTION_KEY, getAltAlleleFractions(Arrays.stream(tumorAlleleCounts).map(x -> (double) FastMath.round(x)/dp).toArray())); + } + final Genotype tumorGenotype = gb.make(); final List genotypes = new ArrayList<>(Arrays.asList(tumorGenotype)); // TODO: We shouldn't always assume that the genotype in the normal is hom ref @@ -269,7 +272,7 @@ public static double[] getEffectiveCounts(final LikelihoodMatrix log10Li private static double[] getAltAlleleFractions(final double[] alleleCounts) { final double[] allAlleleFractions = MathUtils.normalizeFromRealSpace(alleleCounts); - return Arrays.copyOfRange(allAlleleFractions, 1, allAlleleFractions.length); + return Arrays.copyOfRange(allAlleleFractions, 1, allAlleleFractions.length); //omit the first entry of the array corresponding to the reference } /** * Calculate the log10 likelihoods of the ref/alt het genotype for each alt allele, then subtracts diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java index 08576deed9d..c396e54d879 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java @@ -22,6 +22,7 @@ import org.testng.Assert; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; +import scala.tools.nsc.transform.patmat.ScalaLogic; import java.io.File; import java.nio.file.Files; @@ -49,6 +50,8 @@ public class Mutect2IntegrationTest extends CommandLineProgramTest { private static final File NA12878_MITO_BAM = new File(toolsTestDir, "mutect/mito/NA12878.bam"); private static final File MITO_REF = new File(toolsTestDir, "mutect/mito/Homo_sapiens_assembly38.mt_only.fasta"); + private static final File DEEP_MITO_BAM = new File(largeFileTestDir, "mutect/highDPMTsnippet.bam"); + private static final String DEEP_MITO_SAMPLE_NAME = "mixture"; /** * Several DREAM challenge bams with synthetic truth data. In order to keep file sizes manageable, bams are restricted @@ -499,7 +502,34 @@ public void testMitochondria() throws Exception { Assert.assertTrue(expectedKeys.stream().allMatch(variantKeys::contains)); } + @Test + @SuppressWarnings("deprecation") + public void testAFfromADoverHighDP() throws Exception { + Utils.resetRandomGenerator(); + final File unfilteredVcf = createTempFile("unfiltered", ".vcf"); + + final List args = Arrays.asList("-I", DEEP_MITO_BAM.getAbsolutePath(), + "-" + M2ArgumentCollection.TUMOR_SAMPLE_SHORT_NAME, DEEP_MITO_SAMPLE_NAME, + "-R", MITO_REF.getAbsolutePath(), + "-L", "chrM:1-1018", + "-ip", "300", + "-min-pruning", "4", + "--" + M2ArgumentCollection.GET_AF_FROM_AD_LONG_NAME, + "-O", unfilteredVcf.getAbsolutePath()); + runCommandLine(args); + + final List variants = VariantContextTestUtils.streamVcf(unfilteredVcf).collect(Collectors.toList()); + for (final VariantContext vc : variants) { + Assert.assertTrue(vc.isBiallelic()); //I do some lazy parsing below that won't hold for multiple alternate alleles + Genotype g = vc.getGenotype(DEEP_MITO_SAMPLE_NAME); + Assert.assertTrue(g.hasAD()); + final int[] ADs = g.getAD(); + Assert.assertTrue(g.hasExtendedAttribute(GATKVCFConstants.ALLELE_FRACTION_KEY)); + //Assert.assertEquals(Double.parseDouble(String.valueOf(vc.getGenotype(DEEP_MITO_SAMPLE_NAME).getExtendedAttribute(GATKVCFConstants.ALLELE_FRACTION_KEY,"0"))), (double)ADs[1]/(ADs[0]+ADs[1]), 1e-6); + Assert.assertEquals(Double.parseDouble(String.valueOf(vc.getGenotype(DEEP_MITO_SAMPLE_NAME).getAttributeAsString(GATKVCFConstants.ALLELE_FRACTION_KEY,"0"))), (double)ADs[1]/(ADs[0]+ADs[1]), 1e-6); + } + } @DataProvider(name="bamoutVariations") public Object[][] bamoutVariations() { diff --git a/src/test/resources/large/mutect/highDPMTsnippet.bai b/src/test/resources/large/mutect/highDPMTsnippet.bai new file mode 100644 index 00000000000..083b9dd8192 --- /dev/null +++ b/src/test/resources/large/mutect/highDPMTsnippet.bai @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:728bbc3f4ee56a05b60faabbcecdd520e833370a303a7d687eaf4411d15bb932 +size 96 diff --git a/src/test/resources/large/mutect/highDPMTsnippet.bam b/src/test/resources/large/mutect/highDPMTsnippet.bam new file mode 100644 index 00000000000..71f299655fa --- /dev/null +++ b/src/test/resources/large/mutect/highDPMTsnippet.bam @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3d0546ea256ac2cc2fc511e6d0dd288346c9c844dc5e0bc9f17f7f46b5f8e1e0 +size 1478779 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator/expected/testWithAllAnnotations.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator/expected/testWithAllAnnotations.vcf index 359aeb21415..0dcdc441c64 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator/expected/testWithAllAnnotations.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotator/expected/testWithAllAnnotations.vcf @@ -1,6 +1,7 @@ ##fileformat=VCFv4.2 ##FILTER= ##FORMAT= +##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= @@ -59,255 +60,255 @@ ##INFO== 10 for child, GQ > 0 for parents)=[comma-delimited list of child samples]"> ##contig= ##contig= -##reference=file:///Users/tsato/workspace/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta +##reference=file:///Users/gauthier/workspaces/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 -20 10000117 . 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AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;NCC=0;QD=30.62;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:0:0,0:0,0:99:0,0:0,0:0:0:3635,249,0:0,0,0,0:0 -20 10001670 . T G 3673.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.48;MQ0=0;NCC=0;QD=28.17;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:0:0,0:0,0:99:0,0:0,0:0:0:3702,253,0:0,0,0,0:0 -20 10002058 . T G 2963.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=1.913;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.45;MQ0=0;MQRankSum=2.847;NCC=0;QD=26.80;ReadPosRankSum=0.518;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,76:0:0,0:0,0:99:0,0:0,0:0:0:2992,216,0:0,0,0,0:0 -20 10002099 . C T 1194.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.390;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.29;MQ0=0;MQRankSum=-1.284;NCC=0;QD=17.32;ReadPosRankSum=-0.352;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,40:0:0,0:0,0:99:0,0:0,0:0:0:1223,0,844:0,0,0,0:0 -20 10002138 . C G 2443.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.99;MQ0=0;NCC=0;QD=26.00;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,56:0:0,0:0,0:99:0,0:0,0:0:0:2472,169,0:0,0,0,0:0 -20 10002142 . G C 2407.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.90;MQ0=0;NCC=0;QD=30.02;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,55:0:0,0:0,0:99:0,0:0,0:0:0:2436,166,0:0,0,0,0:0 -20 10002470 . C T 2522.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=46.87;MQ0=1;NCC=0;QD=31.98;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,69:0:0,0:0,0:99:0,0:0,0:0:0:2551,189,0:0,0,0,0:0 -20 10002625 . G T 2665.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.05;MQ0=0;NCC=0;QD=27.51;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:0:0,0:0,0:99:0,0:0,0:0:0:2694,193,0:0,0,0,0:0 -20 10003021 . C T 2383.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.02;MQ0=0;NCC=0;QD=29.11;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,62:0:0,0:0,0:99:0,0:0,0:0:0:2412,181,0:0,0,0,0:0 -20 10003358 . A C 1454.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.54;MQ0=0;MQRankSum=1.011;NCC=0;QD=16.16;ReadPosRankSum=-0.809;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,45:0:0,0:0,0:99:0,0:0,0:0:0:1483,0,1477:0,0,0,0:0 -20 10003651 . T C 3620.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.19;MQ0=0;NCC=0;QD=28.08;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:0:0,0:0,0:99:0,0:0,0:0:0:3649,279,0:0,0,0,0:0 -20 10003692 . A G 2609.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.13;MQ0=0;NCC=0;QD=23.23;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,70:0:0,0:0,0:99:0,0:0,0:0:0:2638,205,0:0,0,0,0:0 -20 10003832 . G A 2705.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.13;MQ0=0;NCC=0;QD=29.03;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,66:0:0,0:0,0:99:0,0:0,0:0:0:2734,199,0:0,0,0,0:0 -20 10004094 . A C 1825.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.95;MQ0=1;NCC=0;QD=30.67;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,51:0:0,0:0,0:99:0,0:0,0:0:0:1854,157,0:0,0,0,0:0 -20 10004147 . A G 1837.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.19;MQ0=0;NCC=0;QD=34.03;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,54:0:0,0:0,0:99:0,0:0,0:0:0:1866,156,0:0,0,0,0:0 -20 10004193 . G T 916.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.92;MQ0=0;MQRankSum=3.395;NCC=0;QD=16.67;ReadPosRankSum=1.189;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,30:0:0,0:0,0:99:0,0:0,0:0:0:945,0,776:0,0,0,0:0 -20 10004222 . C CA 12.96 . AC=1;AF=0.500;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=58.08;MQ0=0;NCC=0;QD=0.19;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:50:0,0:0,0:0:0:50,0,923:0,0,0,0:0 -20 10004223 . A AG 47.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=85.00;MQ=56.79;MQ0=0;NCC=0;QD=0.66;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:85:0,0:0,0:0:0:85,0,982:0,0,0,0:0 -20 10004351 . C G 2755.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.04;MQ0=0;NCC=0;QD=26.61;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,70:0:0,0:0,0:99:0,0:0,0:0:0:2784,211,0:0,0,0,0:0 -20 10004389 . T G 2494.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.74;MQ0=0;NCC=0;QD=29.20;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,62:0:0,0:0,0:99:0,0:0,0:0:0:2523,187,0:0,0,0,0:0 -20 10004610 . A C 3625.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=1.841;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.27;MQ0=0;MQRankSum=3.565;NCC=0;QD=28.55;ReadPosRankSum=0.000;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,91:0:0,0:0,0:99:0,0:0,0:0:0:3654,267,0:0,0,0,0:0 -20 10004725 . A G 951.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.142;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.34;MQ0=0;MQRankSum=3.059;NCC=0;QD=14.42;ReadPosRankSum=1.896;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,31:0:0,0:0,0:99:0,0:0,0:0:0:980,0,1168:0,0,0,0:0 -20 10004769 . TAAAACTATGC T 981.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.81;MQ0=0;NCC=0;QD=13.83;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1019,0,1470:0,0,0,0:0 -20 10004874 . A C 3602.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.33;MQ0=0;NCC=0;QD=34.42;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,87:0:0,0:0,0:99:0,0:0,0:0:0:3631,261,0:0,0,0,0:0 -20 10004887 . A G 1323.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.356;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=-0.067;NCC=0;QD=15.39;ReadPosRankSum=-1.198;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,40:0:0,0:0,0:99:0,0:0,0:0:0:1352,0,1542:0,0,0,0:0 -20 10005010 . C T 2934.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.38;MQ0=0;NCC=0;QD=28.53;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:0:0,0:0,0:99:0,0:0,0:0:0:2963,217,0:0,0,0,0:0 -20 10005427 . C T 2214.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=27.23;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,57:0:0,0:0,0:99:0,0:0,0:0:0:2243,165,0:0,0,0,0:0 -20 10005499 . A G 3053.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=29.52;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,76:0:0,0:0,0:99:0,0:0,0:0:0:3082,229,0:0,0,0,0:0 -20 10005587 . A G 1229.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.834;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;MQRankSum=-0.972;NCC=0;QD=16.85;ReadPosRankSum=0.259;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,37:0:0,0:0,0:99:0,0:0,0:0:0:1258,0,1236:0,0,0,0:0 -20 10005723 . A G 3062.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.52;MQ0=0;NCC=0;QD=33.47;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,87:0:0,0:0,0:99:0,0:0,0:0:0:3091,258,0:0,0,0,0:0 -20 10006291 . G A 978.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.29;MQ0=0;MQRankSum=-1.081;NCC=0;QD=11.51;ReadPosRankSum=-1.363;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:54,31:0:0,0:0,0:99:0,0:0,0:0:0:1007,0,1905:0,0,0,0:0 -20 10006404 . A C 2928.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.18;MQ0=0;NCC=0;QD=32.91;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,79:0:0,0:0,0:99:0,0:0,0:0:0:2957,228,0:0,0,0,0:0 -20 10006682 . T A 2874.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.14;MQ0=0;NCC=0;QD=31.31;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:0:0,0:0,0:99:0,0:0,0:0:0:2903,219,0:0,0,0,0:0 -20 10006819 . AAAAC A 2531.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.57;MQ0=0;NCC=0;QD=32.46;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2569,176,0:0,0,0,0:0 -20 10007150 . G C 669.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.476;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=10.47;ReadPosRankSum=-1.047;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,26:0:0,0:0,0:99:0,0:0,0:0:0:698,0,1479:0,0,0,0:0 -20 10007175 . C T 1350.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.249;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.63;MQ0=0;MQRankSum=1.319;NCC=0;QD=21.44;ReadPosRankSum=-0.313;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,39:0:0,0:0,0:99:0,0:0,0:0:0:1379,0,780:0,0,0,0:0 -20 10007352 . C T 2764.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.35;MQ0=0;NCC=0;QD=31.45;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,71:0:0,0:0,0:99:0,0:0,0:0:0:2793,208,0:0,0,0,0:0 -20 10007531 . A G 2920.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.36;MQ0=0;NCC=0;QD=33.27;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:0:0,0:0,0:99:0,0:0,0:0:0:2949,217,0:0,0,0,0:0 -20 10007980 . A C 3524.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.11;MQ0=0;NCC=0;QD=31.26;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:0:0,0:0,0:99:0,0:0,0:0:0:3553,270,0:0,0,0,0:0 -20 10008029 . T TA 1986.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.92;MQ0=0;NCC=0;QD=22.32;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2024,145,0:0,0,0,0:0 -20 10008146 . TA T 2141.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.27;MQ0=0;NCC=0;QD=28.94;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2179,211,0:0,0,0,0:0 -20 10008221 . T C 3224.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.17;MQ0=0;NCC=0;QD=27.76;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:0:0,0:0,0:99:0,0:0,0:0:0:3253,240,0:0,0,0,0:0 -20 10008458 . T G 2654.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;NCC=0;QD=29.09;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:0:0,0:0,0:99:0,0:0,0:0:0:2683,207,0:0,0,0,0:0 -20 10008742 . G T 715.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.649;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=36.14;MQ0=0;MQRankSum=-1.453;NCC=0;QD=13.01;ReadPosRankSum=0.554;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,30:0:0,0:0,0:99:0,0:0,0:0:0:744,0,580:0,0,0,0:0 -20 10008758 . C CA 684.14 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=10.00;MQ=34.98;MQ0=0;NCC=0;QD=12.67;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:10:0,0:0,0:0:0:721,10,0:0,0,0,0:0 -20 10008921 . C CA 253.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.17;MQ0=0;NCC=0;QD=4.88;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:291,0,366:0,0,0,0:0 -20 10008948 . TA T 2057.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=53;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.20;MQ0=0;NCC=0;QD=26.08;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2095,107,0:0,0,0,0:0 -20 10008952 . CACACACACACA C,CCACACACACA 1666.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.48;MQ0=0;NCC=0;QD=32.05;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:1704,525,844,582,0,531:0,0,0,0:0 -20 10009227 . A G 1369.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.220;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.90;MQ0=0;MQRankSum=1.428;NCC=0;QD=21.74;ReadPosRankSum=-1.210;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,39:0:0,0:0,0:99:0,0:0,0:0:0:1398,0,740:0,0,0,0:0 -20 10009246 . A G 3002.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.09;MQ0=0;NCC=0;QD=33.85;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,77:0:0,0:0,0:99:0,0:0,0:0:0:3031,231,0:0,0,0,0:0 -20 10009400 . T A 2998.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=27.08;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,74:0:0,0:0,0:99:0,0:0,0:0:0:3027,223,0:0,0,0,0:0 -20 10009512 . C G 3039.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.47;MQ0=0;NCC=0;QD=25.42;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,77:0:0,0:0,0:99:0,0:0,0:0:0:3068,231,0:0,0,0,0:0 -20 10009719 . A G 1895.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.35;MQ0=0;NCC=0;QD=29.62;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:0:0,0:0,0:99:0,0:0,0:0:0:1924,175,0:0,0,0,0:0 -20 10009795 . A G 1880.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=47;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=27.65;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,47:0:0,0:0,0:99:0,0:0,0:0:0:1909,141,0:0,0,0,0:0 -20 10009842 . G GAA 532.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;NCC=0;QD=9.35;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:570,0,690:0,0,0,0:0 -20 10009844 . G A 661.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.612;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;MQRankSum=4.782;NCC=0;QD=11.61;ReadPosRankSum=2.939;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:10,47:0:0,0:0,0:99:0,0:0,0:0:0:690,0,586:0,0,0,0:0 -20 10009871 . A G 658.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.969;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.95;MQ0=0;MQRankSum=2.062;NCC=0;QD=10.80;ReadPosRankSum=0.479;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,41:0:0,0:0,0:99:0,0:0,0:0:0:687,0,594:0,0,0,0:0 -20 10009875 . A G,AGGGAGG 2369.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.61;MQ0=0;MQRankSum=1.097;NCC=0;QD=29.48;ReadPosRankSum=0.565;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:2407,645,533,697,0,574:0,0,0,0:0 -20 10009879 . A G 2244.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=0.680;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.08;MQ0=0;MQRankSum=1.014;NCC=0;QD=30.56;ReadPosRankSum=2.106;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:5,47:0:0,0:0,0:99:0,0:0,0:0:0:2273,150,0:0,0,0,0:0 -20 10009883 . A G 2151.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.84;MQ0=0;MQRankSum=1.835;NCC=0;QD=33.63;ReadPosRankSum=1.408;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:2,50:0:0,0:0,0:99:0,0:0,0:0:0:2180,147,0:0,0,0,0:0 -20 10010393 . T G 1464.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.075;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;MQRankSum=-1.302;NCC=0;QD=18.31;ReadPosRankSum=-1.781;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,43:0:0,0:0,0:99:0,0:0,0:0:0:1493,0,1230:0,0,0,0:0 -20 10010536 . G GA 2462.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=61.63;MQ0=0;NCC=0;QD=28.97;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2500,243,0:0,0,0,0:0 -20 10010766 . T G 2411.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.66;MQ0=0;NCC=0;QD=30.55;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:0:0,0:0,0:99:0,0:0,0:0:0:2440,199,0:0,0,0,0:0 -20 10010832 . T C 2951.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.50;MQ0=0;NCC=0;QD=32.62;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:0:0,0:0,0:99:0,0:0,0:0:0:2980,226,0:0,0,0,0:0 -20 10011075 . C T 1325.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.459;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;MQRankSum=0.956;NCC=0;QD=15.42;ReadPosRankSum=-0.845;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,40:0:0,0:0,0:99:0,0:0,0:0:0:1354,0,1333:0,0,0,0:0 -20 10011309 . T C 2692.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=34.52;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,78:0:0,0:0,0:99:0,0:0,0:0:0:2721,231,0:0,0,0,0:0 -20 10011517 . GA G 490.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=91;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.90;MQ0=0;NCC=0;QD=5.39;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:528,0,875:0,0,0,0:0 -20 10011666 . C T 2961.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.05;MQ0=0;NCC=0;QD=29.33;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:0:0,0:0,0:99:0,0:0,0:0:0:2990,220,0:0,0,0,0:0 -20 10011939 . C T 2513.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.89;MQ0=0;NCC=0;QD=35.36;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:0:0,0:0,0:99:0,0:0,0:0:0:2542,187,0:0,0,0,0:0 -20 10012021 . CA C 1975.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.69;MQ0=0;NCC=0;QD=27.83;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2013,198,0:0,0,0,0:0 -20 10012362 . G T 835.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=26;ExcessHet=3.0103;FS=0.000;GQ_MEAN=69.00;MQ=50.82;MQ0=0;NCC=0;QD=32.14;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,26:0:0,0:0,0:69:0,0:0,0:0:0:864,69,0:0,0,0,0:0 -20 10012384 . T C 229.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.508;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.02;MQ0=0;MQRankSum=-0.708;NCC=0;QD=10.94;ReadPosRankSum=0.799;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:12,9:0:0,0:0,0:99:0,0:0,0:0:0:258,0,355:0,0,0,0:0 -20 10012387 . T C 533.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=19;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=48.85;MQ0=0;NCC=0;QD=28.09;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,19:0:0,0:0,0:50:0,0:0,0:0:0:562,50,0:0,0,0,0:0 -20 10012479 . A G 592.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=47.06;MQ0=0;NCC=0;QD=26.94;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,22:0:0,0:0,0:50:0,0:0,0:0:0:621,50,0:0,0,0,0:0 -20 10012498 . C G 466.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=15;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=39.11;MQ0=0;NCC=0;QD=31.12;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,15:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 -20 10012518 . T C 406.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=16;ExcessHet=3.0103;FS=0.000;GQ_MEAN=30.00;MQ=33.28;MQ0=0;NCC=0;QD=25.42;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,16:0:0,0:0,0:30:0,0:0,0:0:0:435,30,0:0,0,0,0:0 -20 10012521 . C T 46.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;GQ_MEAN=75.00;MQ=34.81;MQ0=0;MQRankSum=-0.392;NCC=0;QD=2.60;ReadPosRankSum=1.267;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:12,6:0:0,0:0,0:75:0,0:0,0:0:0:75,0,224:0,0,0,0:0 -20 10012570 . G GCA 457.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=13;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=32.18;MQ0=0;NCC=0;QD=34.30;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 -20 10012572 . GT G 457.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=12;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=35.80;MQ0=0;NCC=0;QD=27.00;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 -20 10012631 . C CG 484.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=42.71;MQ0=0;NCC=0;QD=17.31;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:522,0,297:0,0,0,0:0 -20 10012636 . G C 527.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.490;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=42.87;MQ0=1;MQRankSum=-1.693;NCC=0;QD=18.20;ReadPosRankSum=-1.053;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:11,18:0:0,0:0,0:99:0,0:0,0:0:0:556,0,294:0,0,0,0:0 -20 10012714 . G C 1300.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=37;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.65;MQ0=1;NCC=0;QD=30.82;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,37:0:0,0:0,0:99:0,0:0,0:0:0:1329,105,0:0,0,0,0:0 -20 10012751 . T C 937.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=33;ExcessHet=3.0103;FS=0.000;GQ_MEAN=89.00;MQ=50.30;MQ0=0;NCC=0;QD=28.42;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,33:0:0,0:0,0:89:0,0:0,0:0:0:966,89,0:0,0,0,0:0 -20 10013119 . C T 1011.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.704;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.57;MQ0=0;MQRankSum=-0.979;NCC=0;QD=16.32;ReadPosRankSum=0.455;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:31,31:0:0,0:0,0:99:0,0:0,0:0:0:1040,0,936:0,0,0,0:0 -20 10013574 . G A 1050.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.309;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.45;MQ0=0;MQRankSum=-0.578;NCC=0;QD=14.59;ReadPosRankSum=1.159;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,33:0:0,0:0,0:99:0,0:0,0:0:0:1079,0,1301:0,0,0,0:0 -20 10014990 . C CAT 1237.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.44;MQ0=0;NCC=0;QD=14.07;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1275,0,1248:0,0,0,0:0 -20 10015679 . C T 140.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=10.83;ReadPosRankSum=0.784;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:7,6:0:0,0:0,0:99:0,0:0,0:0:0:169,0,166:0,0,0,0:0 -20 10015761 . T C 344.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.982;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.95;MQ0=0;MQRankSum=1.294;NCC=0;QD=15.67;ReadPosRankSum=1.537;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:9,13:0:0,0:0,0:99:0,0:0,0:0:0:373,0,284:0,0,0,0:0 -20 10018158 . G C 1639.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.213;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.79;MQ0=0;MQRankSum=1.118;NCC=0;QD=18.42;ReadPosRankSum=0.784;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,48:0:0,0:0,0:99:0,0:0,0:0:0:1668,0,1165:0,0,0,0:0 -20 10018555 . G A 1567.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.12;ReadPosRankSum=0.590;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,46:0:0,0:0,0:99:0,0:0,0:0:0:1596,0,1211:0,0,0,0:0 -20 10019093 . A G 1244.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.659;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.34;MQ0=0;MQRankSum=1.486;NCC=0;QD=17.78;ReadPosRankSum=-0.259;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,36:0:0,0:0,0:99:0,0:0,0:0:0:1273,0,1104:0,0,0,0:0 -20 10020229 . G A 1538.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=6.050;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.97;MQ0=0;MQRankSum=1.140;NCC=0;QD=17.89;ReadPosRankSum=-0.405;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,46:0:0,0:0,0:99:0,0:0,0:0:0:1567,0,1130:0,0,0,0:0 -20 10023689 . G A 1852.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.195;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.89;MQ0=0;MQRankSum=1.843;NCC=0;QD=22.06;ReadPosRankSum=0.976;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:32,52:0:0,0:0,0:99:0,0:0,0:0:0:1881,0,946:0,0,0,0:0 -20 10024107 . C T 1694.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.641;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;MQRankSum=-1.546;NCC=0;QD=19.48;ReadPosRankSum=0.135;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,49:0:0,0:0,0:99:0,0:0,0:0:0:1723,0,1086:0,0,0,0:0 -20 10024300 . C CTT 87.76 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=46.76;MQ0=1;NCC=0;QD=1.24;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:103,0,137:0,0,0,0:0 -20 10026357 . T C 1166.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.700;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.43;MQ0=0;MQRankSum=-0.148;NCC=0;QD=18.52;ReadPosRankSum=-0.076;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:28,35:0:0,0:0,0:99:0,0:0,0:0:0:1195,0,932:0,0,0,0:0 -20 10026794 . C T 1084.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.828;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.56;MQ0=0;MQRankSum=-0.719;NCC=0;QD=20.86;ReadPosRankSum=-0.533;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:19,33:0:0,0:0,0:99:0,0:0,0:0:0:1113,0,529:0,0,0,0:0 -20 10027234 . A ATTAG 1320.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.21;MQ0=0;NCC=0;QD=18.09;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1358,0,1964:0,0,0,0:0 -20 10027868 . A G 1739.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-5.563;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;MQRankSum=0.032;NCC=0;QD=19.55;ReadPosRankSum=1.704;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,45:0:0,0:0,0:99:0,0:0,0:0:0:1768,0,3201:0,0,0,0:0 -20 10027872 . A G 1724.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-5.491;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=0.101;NCC=0;QD=20.29;ReadPosRankSum=0.837;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,45:0:0,0:0,0:99:0,0:0,0:0:0:1753,0,3136:0,0,0,0:0 -20 10028867 . A ATG 1106.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.58;MQ0=1;NCC=0;QD=11.53;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1144,0,916:0,0,0,0:0 -20 10030188 . T A 1372.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.711;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.44;MQ0=0;MQRankSum=-1.013;NCC=0;QD=16.74;ReadPosRankSum=-0.884;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,40:0:0,0:0,0:99:0,0:0,0:0:0:1401,0,1524:0,0,0,0:0 -20 10031254 . A AT 1463.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.09;MQ0=0;NCC=0;QD=16.26;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1501,0,1159:0,0,0,0:0 -20 10031342 . G A 1834.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.833;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.75;MQ0=0;MQRankSum=-0.866;NCC=0;QD=19.73;ReadPosRankSum=-0.240;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,52:0:0,0:0,0:99:0,0:0,0:0:0:1863,0,1375:0,0,0,0:0 -20 10031798 . G A 4296.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=105;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=29.27;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,105:0:0,0:0,0:99:0,0:0,0:0:0:4325,313,0:0,0,0,0:0 -20 10031827 . C T 2004.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.552;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.83;MQ0=0;MQRankSum=-0.945;NCC=0;QD=18.56;ReadPosRankSum=-1.430;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,56:0:0,0:0,0:99:0,0:0,0:0:0:2033,0,1798:0,0,0,0:0 -20 10032094 . G A 1220.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.488;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=14.71;ReadPosRankSum=-0.579;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,36:0:0,0:0,0:99:0,0:0,0:0:0:1249,0,1497:0,0,0,0:0 -20 10032413 . T G 869.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.142;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.43;MQ0=0;MQRankSum=-0.065;NCC=0;QD=13.18;ReadPosRankSum=-0.945;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,31:0:0,0:0,0:99:0,0:0,0:0:0:898,0,1277:0,0,0,0:0 -20 10032882 . A T 1202.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.697;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-1.014;NCC=0;QD=16.04;ReadPosRankSum=0.594;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,36:0:0,0:0,0:99:0,0:0,0:0:0:1231,0,1406:0,0,0,0:0 -20 10032972 . C CAT 1122.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;NCC=0;QD=17.01;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1160,0,1477:0,0,0,0:0 -20 10034306 . T C 782.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.975;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.84;MQ0=0;MQRankSum=-0.432;NCC=0;QD=9.91;ReadPosRankSum=0.437;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:48,31:0:0,0:0,0:99:0,0:0,0:0:0:811,0,1593:0,0,0,0:0 -20 10036930 . CGATAGCCCTAGCCCTAGATA C 1036.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.30;MQ0=0;NCC=0;QD=13.12;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1074,0,5569:0,0,0,0:0 -20 10037037 . C T 1436.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.504;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.17;MQ0=0;MQRankSum=-1.193;NCC=0;QD=17.52;ReadPosRankSum=-1.504;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,42:0:0,0:0,0:99:0,0:0,0:0:0:1465,0,1124:0,0,0,0:0 -20 10037110 . T TGATA 2780.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.47;MQ0=0;NCC=0;QD=31.96;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2818,189,0:0,0,0,0:0 -20 10037144 . T TGATAGATA 1823.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.22;MQ0=0;NCC=0;QD=24.32;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1861,127,0:0,0,0,0:0 -20 10037709 . A T 1003.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.367;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.68;MQ0=0;MQRankSum=0.934;NCC=0;QD=14.14;ReadPosRankSum=0.330;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,32:0:0,0:0,0:99:0,0:0,0:0:0:1032,0,1354:0,0,0,0:0 -20 10039371 . T G 1324.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.137;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-0.884;NCC=0;QD=17.43;ReadPosRankSum=0.676;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,42:0:0,0:0,0:99:0,0:0,0:0:0:1353,0,1194:0,0,0,0:0 -20 10040772 . C CT 1995.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.46;MQ0=0;NCC=0;QD=24.95;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2033,210,0:0,0,0,0:0 -20 10040812 . AT A 2607.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.83;MQ0=0;NCC=0;QD=31.42;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2645,214,0:0,0,0,0:0 -20 10040821 . T A 1171.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.17;MQ0=0;MQRankSum=0.220;NCC=0;QD=15.02;ReadPosRankSum=-1.489;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,40:0:0,0:0,0:99:0,0:0,0:0:0:1200,0,1099:0,0,0,0:0 -20 10041304 . C T 2765.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;NCC=0;QD=35.92;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,71:0:0,0:0,0:99:0,0:0,0:0:0:2794,204,0:0,0,0,0:0 -20 10041701 . A ATATG 1403.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=58.00;MQ=58.50;MQ0=0;NCC=0;QD=17.55;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:58:0,0:0,0:0:0:1441,0,58:0,0,0,0:0 -20 10042319 . C T 2658.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.61;MQ0=0;NCC=0;QD=29.63;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:0:0,0:0,0:99:0,0:0,0:0:0:2687,199,0:0,0,0,0:0 -20 10042761 . A G 3553.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.70;MQ0=0;NCC=0;QD=28.76;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:0:0,0:0,0:99:0,0:0,0:0:0:3582,272,0:0,0,0,0:0 -20 10042829 . A G 3055.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;NCC=0;QD=29.94;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:0:0,0:0,0:99:0,0:0,0:0:0:3084,235,0:0,0,0,0:0 -20 10043002 . A T 1287.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.986;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=14.97;ReadPosRankSum=-0.209;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:48,38:0:0,0:0,0:99:0,0:0,0:0:0:1316,0,1659:0,0,0,0:0 -20 10044849 . A G 2091.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=60;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.62;MQ0=0;NCC=0;QD=34.86;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,60:0:0,0:0,0:99:0,0:0,0:0:0:2120,177,0:0,0,0,0:0 -20 10045078 . G T 3271.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.46;MQ0=0;NCC=0;QD=31.54;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:0:0,0:0,0:99:0,0:0,0:0:0:3300,244,0:0,0,0,0:0 -20 10045642 . G C 3138.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.49;MQ0=0;NCC=0;QD=28.86;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:0:0,0:0,0:99:0,0:0,0:0:0:3167,246,0:0,0,0,0:0 -20 10046178 . AAGAAAGAAAG A 2159.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=47.11;MQ0=1;NCC=0;QD=33.75;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:2197,153,0:0,0,0,0:0 -20 10046537 . A G 819.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.028;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.18;MQ0=0;MQRankSum=0.542;NCC=0;QD=13.89;ReadPosRankSum=0.592;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,30:0:0,0:0,0:99:0,0:0,0:0:0:848,0,902:0,0,0,0:0 -20 10050828 . T C 1227.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.855;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;MQRankSum=1.256;NCC=0;QD=13.95;ReadPosRankSum=0.004;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:50,38:0:0,0:0,0:99:0,0:0,0:0:0:1256,0,1768:0,0,0,0:0 -20 10051448 . T C 1134.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.289;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;MQRankSum=-1.424;NCC=0;QD=15.98;ReadPosRankSum=-0.719;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,35:0:0,0:0,0:99:0,0:0,0:0:0:1163,0,1150:0,0,0,0:0 -20 10052688 . C A 1062.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.180;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.76;MQ0=0;MQRankSum=0.870;NCC=0;QD=13.80;ReadPosRankSum=1.412;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,32:0:0,0:0,0:99:0,0:0,0:0:0:1091,0,1645:0,0,0,0:0 -20 10058022 . T C 975.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.81;MQ0=0;MQRankSum=0.931;NCC=0;QD=13.37;ReadPosRankSum=0.039;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,34:0:0,0:0,0:99:0,0:0,0:0:0:1004,0,1261:0,0,0,0:0 -20 10062935 . C CA 92.84 . AC=1;AF=0.500;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.53;MQ0=1;NCC=0;QD=1.39;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:130,0,101:0,0,0,0:0 -20 10067049 . TAAAAAAAA T,TA 614.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.36;MQ0=1;NCC=0;QD=11.38;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:652,164,339,135,0,106:0,0,0,0:0 -20 10067090 . C A 2004.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=58;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.81;MQ0=0;NCC=0;QD=34.57;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,57:0:0,0:0,0:99:0,0:0,0:0:0:2033,164,0:0,0,0,0:0 -20 10067264 . G A 2922.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;NCC=0;QD=29.41;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,76:0:0,0:0,0:99:0,0:0,0:0:0:2951,219,0:0,0,0,0:0 -20 10067722 . A C 2146.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=31.11;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,54:0:0,0:0,0:99:0,0:0,0:0:0:2175,163,0:0,0,0,0:0 -20 10068158 . GTGTATATATATA G 66.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=27;ExcessHet=3.0103;FS=0.000;GQ_MEAN=57.00;MQ=57.39;MQ0=0;NCC=0;QD=2.47;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:57:0,0:0,0:0:0:104,0,57:0,0,0,0:0 -20 10068981 . G A 2503.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.20;MQ0=0;NCC=0;QD=34.66;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:0:0,0:0,0:99:0,0:0,0:0:0:2532,184,0:0,0,0,0:0 -20 10070602 . T C 2691.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.73;MQ0=0;NCC=0;QD=29.40;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:0:0,0:0,0:99:0,0:0,0:0:0:2720,216,0:0,0,0,0:0 -20 10070936 . T A 3631.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.98;MQ0=0;NCC=0;QD=36.76;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,85:0:0,0:0,0:99:0,0:0,0:0:0:3660,247,0:0,0,0,0:0 -20 10070938 . G GA 3656.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.09;MQ0=0;NCC=0;QD=30.54;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:3694,250,0:0,0,0,0:0 -20 10071135 . C T 3257.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.13;MQ0=0;NCC=0;QD=21.53;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:0:0,0:0,0:99:0,0:0,0:0:0:3286,238,0:0,0,0,0:0 -20 10071187 . G A 3410.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;NCC=0;QD=34.87;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,84:0:0,0:0,0:99:0,0:0,0:0:0:3439,246,0:0,0,0,0:0 -20 10071890 . T C 1974.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.67;MQ0=0;NCC=0;QD=34.65;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,57:0:0,0:0,0:99:0,0:0,0:0:0:2003,171,0:0,0,0,0:0 -20 10072505 . A G 2099.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.58;MQ0=0;NCC=0;QD=31.81;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,65:0:0,0:0,0:99:0,0:0,0:0:0:2128,191,0:0,0,0,0:0 -20 10074187 . A G 3101.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;NCC=0;QD=31.04;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,79:0:0,0:0,0:99:0,0:0,0:0:0:3130,238,0:0,0,0,0:0 -20 10074240 . T C 3406.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.79;MQ0=0;NCC=0;QD=27.86;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,86:0:0,0:0,0:99:0,0:0,0:0:0:3435,255,0:0,0,0,0:0 -20 10074716 . G A 2400.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.66;MQ0=0;NCC=0;QD=34.17;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,68:0:0,0:0,0:99:0,0:0,0:0:0:2429,192,0:0,0,0,0:0 -20 10074806 . G A 2817.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.37;MQ0=0;NCC=0;QD=28.60;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:0:0,0:0,0:99:0,0:0,0:0:0:2846,213,0:0,0,0,0:0 -20 10075043 . T C 2405.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.27;MQ0=0;NCC=0;QD=25.57;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,63:0:0,0:0,0:99:0,0:0,0:0:0:2434,184,0:0,0,0,0:0 -20 10075168 . C T 3612.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.10;MQ0=0;NCC=0;QD=33.11;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,89:0:0,0:0,0:99:0,0:0,0:0:0:3641,264,0:0,0,0,0:0 -20 10075508 . GA G 1928.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=81;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.40;MQ0=0;NCC=0;QD=23.81;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1966,210,0:0,0,0,0:0 -20 10076250 . A G 1107.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.491;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.40;MQ0=0;MQRankSum=-1.441;NCC=0;QD=13.85;ReadPosRankSum=-0.183;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,39:0:0,0:0,0:99:0,0:0,0:0:0:1136,0,1339:0,0,0,0:0 -20 10076339 . A G 1309.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.37;MQ0=0;MQRankSum=0.157;NCC=0;QD=17.94;ReadPosRankSum=0.821;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:33,40:0:0,0:0,0:99:0,0:0,0:0:0:1338,0,1035:0,0,0,0:0 -20 10076399 . G A 1807.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.274;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.03;ReadPosRankSum=-0.951;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,50:0:0,0:0,0:99:0,0:0,0:0:0:1836,0,1544:0,0,0,0:0 -20 10076989 . CA C 221.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.32;MQ0=0;NCC=0;QD=3.08;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:218,0,332:0,0,0,0:0 -20 10077752 . T C 1345.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.503;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=17.04;ReadPosRankSum=-0.367;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,45:0:0,0:0,0:99:0,0:0,0:0:0:1374,0,1187:0,0,0,0:0 -20 10079476 . T G 11.12 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.512;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=39.00;MQ=58.21;MQ0=0;MQRankSum=-1.771;NCC=0;QD=0.21;ReadPosRankSum=-4.216;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,18:0:0,0:0,0:39:0,0:0,0:0:0:39,0,1137:0,0,0,0:0 -20 10081750 . C A 1353.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.670;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=16.31;ReadPosRankSum=-0.420;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,39:0:0,0:0,0:99:0,0:0,0:0:0:1382,0,1525:0,0,0,0:0 -20 10081800 . C T 1109.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=15.85;ReadPosRankSum=-2.449;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,34:0:0,0:0,0:99:0,0:0,0:0:0:1138,0,1222:0,0,0,0:0 -20 10082892 . C T 1712.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=44;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;NCC=0;QD=30.20;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,44:0:0,0:0,0:99:0,0:0,0:0:0:1741,132,0:0,0,0,0:0 -20 10085211 . A T 1210.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.293;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=-0.093;NCC=0;QD=15.72;ReadPosRankSum=-1.226;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,36:0:0,0:0,0:99:0,0:0,0:0:0:1239,0,1443:0,0,0,0:0 -20 10086110 . G A 1274.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.545;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.89;MQ0=0;MQRankSum=-0.657;NCC=0;QD=15.18;ReadPosRankSum=0.172;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,40:0:0,0:0,0:99:0,0:0,0:0:0:1303,0,1506:0,0,0,0:0 -20 10086283 . G T 1025.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.379;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=12.07;ReadPosRankSum=2.071;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,33:0:0,0:0,0:99:0,0:0,0:0:0:1054,0,1771:0,0,0,0:0 -20 10086619 . T A 796.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.487;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.31;MQ0=0;MQRankSum=-0.387;NCC=0;QD=10.77;ReadPosRankSum=0.340;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,27:0:0,0:0,0:99:0,0:0,0:0:0:825,0,1603:0,0,0,0:0 -20 10086853 . G A 1002.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.915;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.79;MQ0=0;MQRankSum=-0.177;NCC=0;QD=13.02;ReadPosRankSum=-0.245;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:43,34:0:0,0:0,0:99:0,0:0,0:0:0:1031,0,1280:0,0,0,0:0 -20 10086954 . G A 1095.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.606;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=15.88;ReadPosRankSum=-0.657;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,35:0:0,0:0,0:99:0,0:0,0:0:0:1124,0,1051:0,0,0,0:0 -20 10087230 . A G 1842.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.407;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.88;MQ0=0;MQRankSum=1.707;NCC=0;QD=19.20;ReadPosRankSum=0.484;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,54:0:0,0:0,0:99:0,0:0,0:0:0:1871,0,1428:0,0,0,0:0 -20 10087394 . T G 1688.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.437;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;MQRankSum=1.190;NCC=0;QD=19.87;ReadPosRankSum=0.983;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,49:0:0,0:0,0:99:0,0:0,0:0:0:1717,0,1186:0,0,0,0:0 -20 10087754 . T G 1347.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.38;MQ0=0;MQRankSum=2.140;NCC=0;QD=16.64;ReadPosRankSum=-0.768;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,44:0:0,0:0,0:99:0,0:0,0:0:0:1376,0,1239:0,0,0,0:0 -20 10087804 . C T 1619.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.940;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.36;MQ0=0;MQRankSum=2.618;NCC=0;QD=15.88;ReadPosRankSum=0.893;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:51,51:0:0,0:0,0:99:0,0:0,0:0:0:1648,0,1511:0,0,0,0:0 -20 10087820 . C CAG 428.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.31;MQ0=0;NCC=0;QD=4.47;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:466,0,1169:0,0,0,0:0 -20 10088063 . C T 1417.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.214;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.17;MQ0=0;MQRankSum=0.503;NCC=0;QD=14.92;ReadPosRankSum=0.662;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:51,44:0:0,0:0,0:99:0,0:0,0:0:0:1446,0,1403:0,0,0,0:0 -20 10088699 . C T 776.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.018;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.23;MQ0=0;MQRankSum=-2.897;NCC=0;QD=11.26;ReadPosRankSum=-0.883;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,28:0:0,0:0,0:99:0,0:0,0:0:0:805,0,1088:0,0,0,0:0 -20 10088730 . G A 972.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.33;MQ0=0;MQRankSum=-5.029;NCC=0;QD=17.07;ReadPosRankSum=0.399;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:30,27:0:0,0:0,0:99:0,0:0,0:0:0:1001,0,1152:0,0,0,0:0 -20 10088736 . A C 1081.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.85;MQ0=0;MQRankSum=-5.075;NCC=0;QD=18.34;ReadPosRankSum=0.249;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:30,29:0:0,0:0,0:99:0,0:0,0:0:0:1110,0,1194:0,0,0,0:0 -20 10088747 . A G 1111.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.578;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.12;MQ0=0;MQRankSum=-4.708;NCC=0;QD=19.85;ReadPosRankSum=-0.058;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,30:0:0,0:0,0:99:0,0:0,0:0:0:1140,0,995:0,0,0,0:0 -20 10088799 . G A 1018.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.675;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.08;MQ0=0;MQRankSum=-1.830;NCC=0;QD=18.19;ReadPosRankSum=1.503;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,32:0:0,0:0,0:99:0,0:0,0:0:0:1047,0,617:0,0,0,0:0 -20 10088895 . C T 532.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.462;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.09;MQ0=1;MQRankSum=0.577;NCC=0;QD=12.39;ReadPosRankSum=0.933;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,18:0:0,0:0,0:99:0,0:0,0:0:0:561,0,673:0,0,0,0:0 -20 10088968 . C CAAA 1175.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.38;MQ0=0;NCC=0;QD=16.56;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1213,0,1367:0,0,0,0:0 -20 10088980 . T C 1247.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.957;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.88;MQ0=0;MQRankSum=-5.210;NCC=0;QD=17.09;ReadPosRankSum=1.103;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,34:0:0,0:0,0:99:0,0:0,0:0:0:1276,0,1627:0,0,0,0:0 -20 10088985 . T C 1178.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.54;MQ0=0;MQRankSum=-5.309;NCC=0;QD=14.03;ReadPosRankSum=1.491;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,38:0:0,0:0,0:99:0,0:0,0:0:0:1207,0,1729:0,0,0,0:0 -20 10089441 . A G 1179.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.874;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;MQRankSum=-0.948;NCC=0;QD=15.13;ReadPosRankSum=-0.286;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,40:0:0,0:0,0:99:0,0:0,0:0:0:1208,0,1313:0,0,0,0:0 -20 10089525 . C T 1548.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.738;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.96;MQ0=0;MQRankSum=0.160;NCC=0;QD=18.22;ReadPosRankSum=0.960;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,46:0:0,0:0,0:99:0,0:0,0:0:0:1577,0,1088:0,0,0,0:0 -20 10090289 . CA C 384.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.88;MQ0=0;NCC=0;QD=4.93;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:422,0,230:0,0,0,0:0 -20 10090764 . A G 840.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.561;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=12.93;ReadPosRankSum=0.803;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,30:0:0,0:0,0:99:0,0:0,0:0:0:869,0,1207:0,0,0,0:0 -20 10090970 . T C 1257.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.47;MQ0=0;MQRankSum=1.486;NCC=0;QD=17.72;ReadPosRankSum=-0.123;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,37:0:0,0:0,0:99:0,0:0,0:0:0:1286,0,1092:0,0,0,0:0 -20 10091214 . C T 1249.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.75;MQ0=0;MQRankSum=-0.934;NCC=0;QD=16.44;ReadPosRankSum=-0.149;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,40:0:0,0:0,0:99:0,0:0,0:0:0:1278,0,1110:0,0,0,0:0 -20 10092415 . A G 1635.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.731;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.77;MQ0=0;MQRankSum=0.000;NCC=0;QD=16.04;ReadPosRankSum=0.510;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,50:0:0,0:0,0:99:0,0:0,0:0:0:1664,0,1902:0,0,0,0:0 -20 10092927 . G T 106.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.507;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.11;MQ0=0;MQRankSum=-3.009;NCC=0;QD=1.39;ReadPosRankSum=-3.684;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:61,16:0:0,0:0,0:99:0,0:0,0:0:0:135,0,1864:0,0,0,0:0 -20 10093568 . GT G 326.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.30;MQ0=1;NCC=0;QD=5.27;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:364,0,386:0,0,0,0:0 -20 10093923 . T A 1075.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.19;MQ0=0;MQRankSum=0.358;NCC=0;QD=16.06;ReadPosRankSum=-1.689;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,32:0:0,0:0,0:99:0,0:0,0:0:0:1104,0,1257:0,0,0,0:0 -20 10094251 . T A 1270.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.86;ReadPosRankSum=2.029;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:27,37:0:0,0:0,0:99:0,0:0,0:0:0:1299,0,781:0,0,0,0:0 -20 10094582 . A G 923.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.388;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.07;MQ0=0;MQRankSum=1.270;NCC=0;QD=13.39;ReadPosRankSum=-0.151;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,30:0:0,0:0,0:99:0,0:0,0:0:0:952,0,1350:0,0,0,0:0 -20 10094774 . C T 1036.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.036;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;MQRankSum=-0.018;NCC=0;QD=13.29;ReadPosRankSum=0.620;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,38:0:0,0:0,0:99:0,0:0,0:0:0:1065,0,1282:0,0,0,0:0 -20 10095432 . GTGATGATGA G 839.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.88;MQ0=0;NCC=0;QD=11.05;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:877,0,2108:0,0,0,0:0 -20 10095741 . A G 1075.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.10;MQ0=0;MQRankSum=-2.354;NCC=0;QD=14.94;ReadPosRankSum=-0.081;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,35:0:0,0:0,0:99:0,0:0,0:0:0:1104,0,1233:0,0,0,0:0 -20 10096293 . C T 1355.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.580;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.62;MQ0=0;MQRankSum=1.396;NCC=0;QD=17.38;ReadPosRankSum=-0.821;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,39:0:0,0:0,0:99:0,0:0,0:0:0:1384,0,1258:0,0,0,0:0 -20 10096596 . C T 1562.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.048;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.77;MQ0=0;MQRankSum=0.612;NCC=0;QD=17.96;ReadPosRankSum=0.017;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,47:0:0,0:0,0:99:0,0:0,0:0:0:1591,0,1273:0,0,0,0:0 -20 10096768 . A C 1682.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.764;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.24;MQ0=0;MQRankSum=-1.609;NCC=0;QD=18.49;ReadPosRankSum=0.526;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,49:0:0,0:0,0:99:0,0:0,0:0:0:1711,0,1452:0,0,0,0:0 -20 10096899 . G T 1614.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.809;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.25;MQ0=0;MQRankSum=-0.541;NCC=0;QD=19.94;ReadPosRankSum=0.558;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,41:0:0,0:0,0:99:0,0:0,0:0:0:1643,0,1520:0,0,0,0:0 -20 10096905 . TA T 1600.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.00;MQ0=0;NCC=0;QD=19.06;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1638,0,1623:0,0,0,0:0 -20 10096933 . G C 1511.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.914;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.83;MQ0=0;MQRankSum=-1.802;NCC=0;QD=17.38;ReadPosRankSum=0.264;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,41:0:0,0:0,0:99:0,0:0,0:0:0:1540,0,1770:0,0,0,0:0 -20 10096958 . G A 1766.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.968;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.91;MQ0=0;MQRankSum=-0.962;NCC=0;QD=18.80;ReadPosRankSum=-1.953;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,47:0:0,0:0,0:99:0,0:0,0:0:0:1795,0,1629:0,0,0,0:0 -20 10097075 . T G 1445.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.641;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;MQRankSum=-1.604;NCC=0;QD=15.38;ReadPosRankSum=-0.200;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,49:0:0,0:0,0:99:0,0:0,0:0:0:1474,0,1482:0,0,0,0:0 -20 10097101 . C CTTT 1091.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.36;MQ0=0;NCC=0;QD=13.65;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1129,0,1306:0,0,0,0:0 -20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1054.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=65;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.82;MQ0=0;NCC=0;QD=16.23;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:1092,0,2241:0,0,0,0:0 -20 10097437 . TTTTC T 796.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.92;MQ0=0;NCC=0;QD=12.07;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:834,0,1193:0,0,0,0:0 -20 10097626 . C A 626.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.128;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.28;MQ0=0;MQRankSum=-1.371;NCC=0;QD=12.79;ReadPosRankSum=1.079;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,20:0:0,0:0,0:99:0,0:0,0:0:0:655,0,957:0,0,0,0:0 -20 10097789 . T C 688.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.396;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.02;MQ0=0;MQRankSum=-2.744;NCC=0;QD=11.67;ReadPosRankSum=0.134;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,24:0:0,0:0,0:99:0,0:0,0:0:0:717,0,1190:0,0,0,0:0 -20 10097928 . G A 570.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.621;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.79;MQ0=1;MQRankSum=-1.850;NCC=0;QD=14.64;ReadPosRankSum=-0.309;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,21:0:0,0:0,0:99:0,0:0,0:0:0:599,0,586:0,0,0,0:0 -20 10098110 . G C 586.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.510;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.11;MQ0=0;MQRankSum=-1.477;NCC=0;QD=15.86;ReadPosRankSum=-0.714;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,17:0:0,0:0,0:99:0,0:0,0:0:0:615,0,727:0,0,0,0:0 -20 10098135 . C A 471.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.155;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.06;MQ0=0;MQRankSum=1.546;NCC=0;QD=12.10;ReadPosRankSum=-0.591;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,14:0:0,0:0,0:99:0,0:0,0:0:0:500,0,964:0,0,0,0:0 -20 10098219 . TATATATA T 295.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=21;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.94;MQ0=0;NCC=0;QD=14.08;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:333,0,461:0,0,0,0:0 -20 10098237 . A T 244.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.81;MQ0=0;MQRankSum=-2.347;NCC=0;QD=20.40;ReadPosRankSum=1.188;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:7,5:0:0,0:0,0:99:0,0:0,0:0:0:273,0,273:0,0,0,0:0 -20 10098265 . T C 133.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.645;ClippingRankSum=0.000;DP=6;ExcessHet=3.0103;FS=0.000;GQ_MEAN=59.00;MQ=41.96;MQ0=0;MQRankSum=-1.645;NCC=0;QD=22.30;ReadPosRankSum=0.524;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:2,4:0:0,0:0,0:59:0,0:0,0:0:0:162,0,59:0,0,0,0:0 -20 10098885 . C CA 433.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=32;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.27;MQ0=1;NCC=0;QD=13.55;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:471,0,572:0,0,0,0:0 -20 10098945 . T C 407.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.225;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.09;MQ0=0;MQRankSum=-2.636;NCC=0;QD=17.73;ReadPosRankSum=1.042;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:9,14:0:0,0:0,0:99:0,0:0,0:0:0:436,0,248:0,0,0,0:0 -20 10098987 . C T 379.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.922;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.88;MQ0=0;MQRankSum=-2.877;NCC=0;QD=15.19;ReadPosRankSum=0.329;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:11,14:0:0,0:0,0:99:0,0:0,0:0:0:408,0,350:0,0,0,0:0 -20 10099029 . T C 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.864;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.32;MQ0=0;MQRankSum=-3.439;NCC=0;QD=11.96;ReadPosRankSum=-0.361;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,10:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 -20 10099034 . C A 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.757;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.32;MQ0=0;MQRankSum=-3.641;NCC=0;QD=11.96;ReadPosRankSum=-1.515;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,10:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 -20 10099044 . A C 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.54;MQ0=0;MQRankSum=-4.268;NCC=0;QD=14.56;ReadPosRankSum=-2.046;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,7:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 -20 10099046 . T C 304.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.984;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.12;MQ0=0;MQRankSum=-4.268;NCC=0;QD=13.85;ReadPosRankSum=-2.117;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:15,7:0:0,0:0,0:99:0,0:0,0:0:0:333,0,603:0,0,0,0:0 -20 10099055 . T C 256.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.71;MQ0=0;MQRankSum=-4.432;NCC=0;QD=9.51;ReadPosRankSum=-2.657;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,11:0:0,0:0,0:99:0,0:0,0:0:0:285,0,673:0,0,0,0:0 -20 10099079 . C T 116.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.38;MQ0=0;MQRankSum=-4.225;NCC=0;QD=3.43;ReadPosRankSum=1.168;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,14:0:0,0:0,0:99:0,0:0,0:0:0:145,0,886:0,0,0,0:0 -20 10099111 . T TTTTGTTTG 656.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=48;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.62;MQ0=0;NCC=0;QD=13.68;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0:0,0:0,0:99:0,0:0,0:0:0:694,0,802:0,0,0,0:0 -20 10099140 . G T 1005.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.536;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.53;MQ0=0;MQRankSum=-1.610;NCC=0;QD=16.22;ReadPosRankSum=0.896;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:32,30:0:0,0:0,0:99:0,0:0,0:0:0:1034,0,931:0,0,0,0:0 -20 10099190 . G T 1034.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.89;MQ0=0;MQRankSum=-1.485;NCC=0;QD=16.17;ReadPosRankSum=-0.491;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:33,31:0:0,0:0,0:99:0,0:0,0:0:0:1063,0,1154:0,0,0,0:0 -20 10099220 . A G 577.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.426;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.00;MQ0=1;MQRankSum=-2.352;NCC=0;QD=12.56;ReadPosRankSum=0.119;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,20:0:0,0:0,0:99:0,0:0,0:0:0:606,0,873:0,0,0,0:0 -20 10099250 . G A 699.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.980;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.00;MQ0=0;MQRankSum=-2.203;NCC=0;QD=18.42;ReadPosRankSum=0.096;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,22:0:0,0:0,0:99:0,0:0,0:0:0:728,0,424:0,0,0,0:0 -20 10099535 . G A 1335.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.034;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.01;MQ0=0;MQRankSum=-1.418;NCC=0;QD=20.55;ReadPosRankSum=-0.771;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,39:0:0,0:0,0:99:0,0:0,0:0:0:1364,0,686:0,0,0,0:0 -20 10099565 . C T 1346.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.595;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-1.266;NCC=0;QD=19.52;ReadPosRankSum=1.454;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:31,38:0:0,0:0,0:99:0,0:0,0:0:0:1375,0,994:0,0,0,0:0 -20 10099755 . C T 1098.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.866;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;MQRankSum=-0.046;NCC=0;QD=16.16;ReadPosRankSum=-0.245;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,34:0:0,0:0,0:99:0,0:0,0:0:0:1127,0,1148:0,0,0,0:0 -20 10099832 . A G 1073.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.563;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.96;MQ0=0;MQRankSum=0.869;NCC=0;QD=14.91;ReadPosRankSum=-0.882;SOR=0.693;Samples=NA12878 GT:AD:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,33:0:0,0:0,0:99:0,0:0,0:0:0:1102,0,1430:0,0,0,0:0 +20 10000117 . C T 905.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.136;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.71;MQ0=0;MQRankSum=0.913;NCC=0;QD=14.15;ReadPosRankSum=-0.481;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,28:0.438:0:0,0:0,0:99:0,0:0,0:0:0:934,0,1248:0,0,0,0:0 +20 10000211 . C T 941.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.000;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.67;MQ0=0;MQRankSum=1.037;NCC=0;QD=16.82;ReadPosRankSum=0.996;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:28,28:0.509:0:0,0:0,0:99:0,0:0,0:0:0:970,0,906:0,0,0,0:0 +20 10000439 . T G 2804.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.06;MQ0=0;NCC=0;QD=25.36;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2833,240,0:0,0,0,0:0 +20 10000598 . T A 1941.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=50;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.36;MQ0=0;NCC=0;QD=28.73;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,50:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1970,147,0:0,0,0,0:0 +20 10000694 . G A 1008.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.709;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=47.86;MQ0=1;MQRankSum=-5.073;NCC=0;QD=11.73;ReadPosRankSum=0.779;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:48,38:0.451:0:0,0:0,0:99:0,0:0,0:0:0:1037,0,1601:0,0,0,0:0 +20 10000758 . T A 3838.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=95;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.37;MQ0=0;NCC=0;QD=30.97;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,95:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3867,286,0:0,0,0,0:0 +20 10001019 . T G 650.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.344;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=47.38;MQ0=5;MQRankSum=-7.093;NCC=0;QD=8.91;ReadPosRankSum=-0.762;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,32:0.400:0:0,0:0,0:99:0,0:0,0:0:0:679,0,1426:0,0,0,0:0 +20 10001298 . T A 2917.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.34;MQ0=0;NCC=0;QD=27.24;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2946,220,0:0,0,0,0:0 +20 10001436 . A AAGGCT 2301.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=49;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=42.31;MQ0=0;NCC=0;QD=28.20;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2339,156,0:0,0,0,0:0 +20 10001474 . C T 2640.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=43.69;MQ0=0;NCC=0;QD=25.00;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,74:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2669,219,0:0,0,0,0:0 +20 10001617 . C A 1731.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.143;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.01;MQ0=0;MQRankSum=1.394;NCC=0;QD=16.65;ReadPosRankSum=-0.725;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,52:0.495:0:0,0:0,0:99:0,0:0,0:0:0:1760,0,1781:0,0,0,0:0 +20 10001628 . G A 3898.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.17;MQ0=0;NCC=0;QD=29.56;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,95:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3927,285,0:0,0,0,0:0 +20 10001661 . T C 3606.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;NCC=0;QD=30.62;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3635,249,0:0,0,0,0:0 +20 10001670 . T G 3673.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.48;MQ0=0;NCC=0;QD=28.17;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3702,253,0:0,0,0,0:0 +20 10002058 . T G 2963.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=1.913;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.45;MQ0=0;MQRankSum=2.847;NCC=0;QD=26.80;ReadPosRankSum=0.518;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,76:0.987:0:0,0:0,0:99:0,0:0,0:0:0:2992,216,0:0,0,0,0:0 +20 10002099 . C T 1194.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.390;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.29;MQ0=0;MQRankSum=-1.284;NCC=0;QD=17.32;ReadPosRankSum=-0.352;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,40:0.585:0:0,0:0,0:99:0,0:0,0:0:0:1223,0,844:0,0,0,0:0 +20 10002138 . C G 2443.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.99;MQ0=0;NCC=0;QD=26.00;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,56:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2472,169,0:0,0,0,0:0 +20 10002142 . G C 2407.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.90;MQ0=0;NCC=0;QD=30.02;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,55:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2436,166,0:0,0,0,0:0 +20 10002470 . C T 2522.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=46.87;MQ0=1;NCC=0;QD=31.98;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,69:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2551,189,0:0,0,0,0:0 +20 10002625 . G T 2665.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.05;MQ0=0;NCC=0;QD=27.51;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2694,193,0:0,0,0,0:0 +20 10003021 . C T 2383.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.02;MQ0=0;NCC=0;QD=29.11;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,62:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2412,181,0:0,0,0,0:0 +20 10003358 . A C 1454.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.54;MQ0=0;MQRankSum=1.011;NCC=0;QD=16.16;ReadPosRankSum=-0.809;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,45:0.494:0:0,0:0,0:99:0,0:0,0:0:0:1483,0,1477:0,0,0,0:0 +20 10003651 . T C 3620.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.19;MQ0=0;NCC=0;QD=28.08;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3649,279,0:0,0,0,0:0 +20 10003692 . A G 2609.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.13;MQ0=0;NCC=0;QD=23.23;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,70:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2638,205,0:0,0,0,0:0 +20 10003832 . G A 2705.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.13;MQ0=0;NCC=0;QD=29.03;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,66:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2734,199,0:0,0,0,0:0 +20 10004094 . A C 1825.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.95;MQ0=1;NCC=0;QD=30.67;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,51:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1854,157,0:0,0,0,0:0 +20 10004147 . A G 1837.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.19;MQ0=0;NCC=0;QD=34.03;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,54:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1866,156,0:0,0,0,0:0 +20 10004193 . G T 916.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.92;MQ0=0;MQRankSum=3.395;NCC=0;QD=16.67;ReadPosRankSum=1.189;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,30:0.549:0:0,0:0,0:99:0,0:0,0:0:0:945,0,776:0,0,0,0:0 +20 10004222 . C CA 12.96 . AC=1;AF=0.500;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=58.08;MQ0=0;NCC=0;QD=0.19;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.205:0:0,0:0,0:50:0,0:0,0:0:0:50,0,923:0,0,0,0:0 +20 10004223 . A AG 47.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=85.00;MQ=56.79;MQ0=0;NCC=0;QD=0.66;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.234:0:0,0:0,0:85:0,0:0,0:0:0:85,0,982:0,0,0,0:0 +20 10004351 . C G 2755.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.04;MQ0=0;NCC=0;QD=26.61;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,70:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2784,211,0:0,0,0,0:0 +20 10004389 . T G 2494.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.74;MQ0=0;NCC=0;QD=29.20;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,62:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2523,187,0:0,0,0,0:0 +20 10004610 . A C 3625.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=1.841;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.27;MQ0=0;MQRankSum=3.565;NCC=0;QD=28.55;ReadPosRankSum=0.000;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,91:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3654,267,0:0,0,0,0:0 +20 10004725 . A G 951.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.142;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.34;MQ0=0;MQRankSum=3.059;NCC=0;QD=14.42;ReadPosRankSum=1.896;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,31:0.462:0:0,0:0,0:99:0,0:0,0:0:0:980,0,1168:0,0,0,0:0 +20 10004769 . TAAAACTATGC T 981.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.81;MQ0=0;NCC=0;QD=13.83;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.422:0:0,0:0,0:99:0,0:0,0:0:0:1019,0,1470:0,0,0,0:0 +20 10004874 . A C 3602.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.33;MQ0=0;NCC=0;QD=34.42;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,87:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3631,261,0:0,0,0,0:0 +20 10004887 . A G 1323.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.356;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=-0.067;NCC=0;QD=15.39;ReadPosRankSum=-1.198;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,40:0.471:0:0,0:0,0:99:0,0:0,0:0:0:1352,0,1542:0,0,0,0:0 +20 10005010 . C T 2934.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.38;MQ0=0;NCC=0;QD=28.53;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2963,217,0:0,0,0,0:0 +20 10005427 . C T 2214.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=27.23;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,57:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2243,165,0:0,0,0,0:0 +20 10005499 . A G 3053.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=29.52;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,76:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3082,229,0:0,0,0,0:0 +20 10005587 . A G 1229.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.834;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;MQRankSum=-0.972;NCC=0;QD=16.85;ReadPosRankSum=0.259;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,37:0.500:0:0,0:0,0:99:0,0:0,0:0:0:1258,0,1236:0,0,0,0:0 +20 10005723 . A G 3062.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.52;MQ0=0;NCC=0;QD=33.47;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,87:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3091,258,0:0,0,0,0:0 +20 10006291 . G A 978.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.311;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.29;MQ0=0;MQRankSum=-1.081;NCC=0;QD=11.51;ReadPosRankSum=-1.363;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:54,31:0.369:0:0,0:0,0:99:0,0:0,0:0:0:1007,0,1905:0,0,0,0:0 +20 10006404 . A C 2928.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.18;MQ0=0;NCC=0;QD=32.91;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,79:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2957,228,0:0,0,0,0:0 +20 10006682 . T A 2874.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.14;MQ0=0;NCC=0;QD=31.31;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2903,219,0:0,0,0,0:0 +20 10006819 . AAAAC A 2531.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.57;MQ0=0;NCC=0;QD=32.46;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2569,176,0:0,0,0,0:0 +20 10007150 . G C 669.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.476;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=10.47;ReadPosRankSum=-1.047;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,26:0.397:0:0,0:0,0:99:0,0:0,0:0:0:698,0,1479:0,0,0,0:0 +20 10007175 . C T 1350.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.249;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.63;MQ0=0;MQRankSum=1.319;NCC=0;QD=21.44;ReadPosRankSum=-0.313;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,39:0.623:0:0,0:0,0:99:0,0:0,0:0:0:1379,0,780:0,0,0,0:0 +20 10007352 . C T 2764.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.35;MQ0=0;NCC=0;QD=31.45;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,71:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2793,208,0:0,0,0,0:0 +20 10007531 . A G 2920.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.36;MQ0=0;NCC=0;QD=33.27;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2949,217,0:0,0,0,0:0 +20 10007980 . A C 3524.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.11;MQ0=0;NCC=0;QD=31.26;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3553,270,0:0,0,0,0:0 +20 10008029 . T TA 1986.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.92;MQ0=0;NCC=0;QD=22.32;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0.960:0:0,0:0,0:99:0,0:0,0:0:0:2024,145,0:0,0,0,0:0 +20 10008146 . TA T 2141.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.27;MQ0=0;NCC=0;QD=28.94;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2179,211,0:0,0,0,0:0 +20 10008221 . T C 3224.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.17;MQ0=0;NCC=0;QD=27.76;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3253,240,0:0,0,0,0:0 +20 10008458 . T G 2654.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;NCC=0;QD=29.09;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2683,207,0:0,0,0,0:0 +20 10008742 . G T 715.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.649;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=36.14;MQ0=0;MQRankSum=-1.453;NCC=0;QD=13.01;ReadPosRankSum=0.554;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,30:0.531:0:0,0:0,0:99:0,0:0,0:0:0:744,0,580:0,0,0,0:0 +20 10008758 . C CA 684.14 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=10.00;MQ=34.98;MQ0=0;NCC=0;QD=12.67;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0.886:0:0,0:0,0:10:0,0:0,0:0:0:721,10,0:0,0,0,0:0 +20 10008921 . C CA 253.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.17;MQ0=0;NCC=0;QD=4.88;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.471:0:0,0:0,0:99:0,0:0,0:0:0:291,0,366:0,0,0,0:0 +20 10008948 . TA T 2057.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=53;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.20;MQ0=0;NCC=0;QD=26.08;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:0.980:0:0,0:0,0:99:0,0:0,0:0:0:2095,107,0:0,0,0,0:0 +20 10008952 . CACACACACACA C,CCACACACACA 1666.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.48;MQ0=0;NCC=0;QD=32.05;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0.472,0.500:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:1704,525,844,582,0,531:0,0,0,0:0 +20 10009227 . A G 1369.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.220;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.90;MQ0=0;MQRankSum=1.428;NCC=0;QD=21.74;ReadPosRankSum=-1.210;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,39:0.629:0:0,0:0,0:99:0,0:0,0:0:0:1398,0,740:0,0,0,0:0 +20 10009246 . A G 3002.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.09;MQ0=0;NCC=0;QD=33.85;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,77:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3031,231,0:0,0,0,0:0 +20 10009400 . T A 2998.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=27.08;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,74:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3027,223,0:0,0,0,0:0 +20 10009512 . C G 3039.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.47;MQ0=0;NCC=0;QD=25.42;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,77:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3068,231,0:0,0,0,0:0 +20 10009719 . A G 1895.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.35;MQ0=0;NCC=0;QD=29.62;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1924,175,0:0,0,0,0:0 +20 10009795 . A G 1880.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=47;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=27.65;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,47:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1909,141,0:0,0,0,0:0 +20 10009842 . G GAA 532.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;NCC=0;QD=9.35;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.441:0:0,0:0,0:99:0,0:0,0:0:0:570,0,690:0,0,0,0:0 +20 10009844 . G A 661.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.612;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.14;MQ0=0;MQRankSum=4.782;NCC=0;QD=11.61;ReadPosRankSum=2.939;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:10,47:0.543:0:0,0:0,0:99:0,0:0,0:0:0:690,0,586:0,0,0,0:0 +20 10009871 . A G 658.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.969;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.95;MQ0=0;MQRankSum=2.062;NCC=0;QD=10.80;ReadPosRankSum=0.479;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,41:0.528:0:0,0:0,0:99:0,0:0,0:0:0:687,0,594:0,0,0,0:0 +20 10009875 . A G,AGGGAGG 2369.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;BaseQRankSum=0.473;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.61;MQ0=0;MQRankSum=1.097;NCC=0;QD=29.48;ReadPosRankSum=0.565;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0.500,0.433:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:2407,645,533,697,0,574:0,0,0,0:0 +20 10009879 . A G 2244.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=0.680;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.08;MQ0=0;MQRankSum=1.014;NCC=0;QD=30.56;ReadPosRankSum=2.106;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:5,47:0.959:0:0,0:0,0:99:0,0:0,0:0:0:2273,150,0:0,0,0,0:0 +20 10009883 . A G 2151.77 . AC=2;AF=1.00;AN=2;AS_MQ;BaseQRankSum=-0.492;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.84;MQ0=0;MQRankSum=1.835;NCC=0;QD=33.63;ReadPosRankSum=1.408;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:2,50:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2180,147,0:0,0,0,0:0 +20 10010393 . T G 1464.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.075;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;MQRankSum=-1.302;NCC=0;QD=18.31;ReadPosRankSum=-1.781;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,43:0.544:0:0,0:0,0:99:0,0:0,0:0:0:1493,0,1230:0,0,0,0:0 +20 10010536 . G GA 2462.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=61.63;MQ0=0;NCC=0;QD=28.97;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2500,243,0:0,0,0,0:0 +20 10010766 . T G 2411.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.66;MQ0=0;NCC=0;QD=30.55;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2440,199,0:0,0,0,0:0 +20 10010832 . T C 2951.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.50;MQ0=0;NCC=0;QD=32.62;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,75:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2980,226,0:0,0,0,0:0 +20 10011075 . C T 1325.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.459;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;MQRankSum=0.956;NCC=0;QD=15.42;ReadPosRankSum=-0.845;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,40:0.470:0:0,0:0,0:99:0,0:0,0:0:0:1354,0,1333:0,0,0,0:0 +20 10011309 . T C 2692.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=34.52;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,78:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2721,231,0:0,0,0,0:0 +20 10011517 . GA G 490.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=91;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.90;MQ0=0;NCC=0;QD=5.39;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.395:0:0,0:0,0:99:0,0:0,0:0:0:528,0,875:0,0,0,0:0 +20 10011666 . C T 2961.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.05;MQ0=0;NCC=0;QD=29.33;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2990,220,0:0,0,0,0:0 +20 10011939 . C T 2513.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.89;MQ0=0;NCC=0;QD=35.36;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2542,187,0:0,0,0,0:0 +20 10012021 . CA C 1975.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.69;MQ0=0;NCC=0;QD=27.83;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2013,198,0:0,0,0,0:0 +20 10012362 . G T 835.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=26;ExcessHet=3.0103;FS=0.000;GQ_MEAN=69.00;MQ=50.82;MQ0=0;NCC=0;QD=32.14;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,26:1.00:0:0,0:0,0:69:0,0:0,0:0:0:864,69,0:0,0,0,0:0 +20 10012384 . T C 229.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.508;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.02;MQ0=0;MQRankSum=-0.708;NCC=0;QD=10.94;ReadPosRankSum=0.799;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:12,9:0.444:0:0,0:0,0:99:0,0:0,0:0:0:258,0,355:0,0,0,0:0 +20 10012387 . T C 533.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=19;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=48.85;MQ0=0;NCC=0;QD=28.09;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,19:1.00:0:0,0:0,0:50:0,0:0,0:0:0:562,50,0:0,0,0,0:0 +20 10012479 . A G 592.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=50.00;MQ=47.06;MQ0=0;NCC=0;QD=26.94;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,22:1.00:0:0,0:0,0:50:0,0:0,0:0:0:621,50,0:0,0,0,0:0 +20 10012498 . C G 466.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=15;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=39.11;MQ0=0;NCC=0;QD=31.12;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,15:1.00:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 +20 10012518 . T C 406.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=16;ExcessHet=3.0103;FS=0.000;GQ_MEAN=30.00;MQ=33.28;MQ0=0;NCC=0;QD=25.42;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,16:1.00:0:0,0:0,0:30:0,0:0,0:0:0:435,30,0:0,0,0,0:0 +20 10012521 . C T 46.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;GQ_MEAN=75.00;MQ=34.81;MQ0=0;MQRankSum=-0.392;NCC=0;QD=2.60;ReadPosRankSum=1.267;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:12,6:0.273:0:0,0:0,0:75:0,0:0,0:0:0:75,0,224:0,0,0,0:0 +20 10012570 . G GCA 457.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=13;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=32.18;MQ0=0;NCC=0;QD=34.30;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 +20 10012572 . GT G 457.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=12;ExcessHet=3.0103;FS=0.000;GQ_MEAN=33.00;MQ=35.80;MQ0=0;NCC=0;QD=27.00;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:33:0,0:0,0:0:0:495,33,0:0,0,0,0:0 +20 10012631 . C CG 484.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=42.71;MQ0=0;NCC=0;QD=17.31;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.619:0:0,0:0,0:99:0,0:0,0:0:0:522,0,297:0,0,0,0:0 +20 10012636 . G C 527.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.490;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=42.87;MQ0=1;MQRankSum=-1.693;NCC=0;QD=18.20;ReadPosRankSum=-1.053;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:11,18:0.636:0:0,0:0,0:99:0,0:0,0:0:0:556,0,294:0,0,0,0:0 +20 10012714 . G C 1300.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=37;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.65;MQ0=1;NCC=0;QD=30.82;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,37:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1329,105,0:0,0,0,0:0 +20 10012751 . T C 937.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=33;ExcessHet=3.0103;FS=0.000;GQ_MEAN=89.00;MQ=50.30;MQ0=0;NCC=0;QD=28.42;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,33:1.00:0:0,0:0,0:89:0,0:0,0:0:0:966,89,0:0,0,0,0:0 +20 10013119 . C T 1011.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.704;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.57;MQ0=0;MQRankSum=-0.979;NCC=0;QD=16.32;ReadPosRankSum=0.455;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:31,31:0.508:0:0,0:0,0:99:0,0:0,0:0:0:1040,0,936:0,0,0,0:0 +20 10013574 . G A 1050.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.309;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.45;MQ0=0;MQRankSum=-0.578;NCC=0;QD=14.59;ReadPosRankSum=1.159;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,33:0.449:0:0,0:0,0:99:0,0:0,0:0:0:1079,0,1301:0,0,0,0:0 +20 10014990 . C CAT 1237.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.44;MQ0=0;NCC=0;QD=14.07;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.500:0:0,0:0,0:99:0,0:0,0:0:0:1275,0,1248:0,0,0,0:0 +20 10015679 . C T 140.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=10.83;ReadPosRankSum=0.784;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:7,6:0.500:0:0,0:0,0:99:0,0:0,0:0:0:169,0,166:0,0,0,0:0 +20 10015761 . T C 344.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.982;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.95;MQ0=0;MQRankSum=1.294;NCC=0;QD=15.67;ReadPosRankSum=1.537;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:9,13:0.591:0:0,0:0,0:99:0,0:0,0:0:0:373,0,284:0,0,0,0:0 +20 10018158 . G C 1639.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.213;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.79;MQ0=0;MQRankSum=1.118;NCC=0;QD=18.42;ReadPosRankSum=0.784;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,48:0.545:0:0,0:0,0:99:0,0:0,0:0:0:1668,0,1165:0,0,0,0:0 +20 10018555 . G A 1567.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.12;ReadPosRankSum=0.590;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,46:0.563:0:0,0:0,0:99:0,0:0,0:0:0:1596,0,1211:0,0,0,0:0 +20 10019093 . A G 1244.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.659;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.34;MQ0=0;MQRankSum=1.486;NCC=0;QD=17.78;ReadPosRankSum=-0.259;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,36:0.522:0:0,0:0,0:99:0,0:0,0:0:0:1273,0,1104:0,0,0,0:0 +20 10020229 . G A 1538.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=6.050;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.97;MQ0=0;MQRankSum=1.140;NCC=0;QD=17.89;ReadPosRankSum=-0.405;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,46:0.537:0:0,0:0,0:99:0,0:0,0:0:0:1567,0,1130:0,0,0,0:0 +20 10023689 . G A 1852.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.195;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.89;MQ0=0;MQRankSum=1.843;NCC=0;QD=22.06;ReadPosRankSum=0.976;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:32,52:0.638:0:0,0:0,0:99:0,0:0,0:0:0:1881,0,946:0,0,0,0:0 +20 10024107 . C T 1694.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.641;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;MQRankSum=-1.546;NCC=0;QD=19.48;ReadPosRankSum=0.135;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,49:0.558:0:0,0:0,0:99:0,0:0,0:0:0:1723,0,1086:0,0,0,0:0 +20 10024300 . C CTT 87.76 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=46.76;MQ0=1;NCC=0;QD=1.24;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.471:0:0,0:0,0:99:0,0:0,0:0:0:103,0,137:0,0,0,0:0 +20 10026357 . T C 1166.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.700;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.43;MQ0=0;MQRankSum=-0.148;NCC=0;QD=18.52;ReadPosRankSum=-0.076;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:28,35:0.556:0:0,0:0,0:99:0,0:0,0:0:0:1195,0,932:0,0,0,0:0 +20 10026794 . C T 1084.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.828;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.56;MQ0=0;MQRankSum=-0.719;NCC=0;QD=20.86;ReadPosRankSum=-0.533;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:19,33:0.635:0:0,0:0,0:99:0,0:0,0:0:0:1113,0,529:0,0,0,0:0 +20 10027234 . A ATTAG 1320.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.21;MQ0=0;NCC=0;QD=18.09;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.507:0:0,0:0,0:99:0,0:0,0:0:0:1358,0,1964:0,0,0,0:0 +20 10027868 . A G 1739.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-5.563;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;MQRankSum=0.032;NCC=0;QD=19.55;ReadPosRankSum=1.704;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,45:0.506:0:0,0:0,0:99:0,0:0,0:0:0:1768,0,3201:0,0,0,0:0 +20 10027872 . A G 1724.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-5.491;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=0.101;NCC=0;QD=20.29;ReadPosRankSum=0.837;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,45:0.529:0:0,0:0,0:99:0,0:0,0:0:0:1753,0,3136:0,0,0,0:0 +20 10028867 . A ATG 1106.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.58;MQ0=1;NCC=0;QD=11.53;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.549:0:0,0:0,0:99:0,0:0,0:0:0:1144,0,916:0,0,0,0:0 +20 10030188 . T A 1372.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.711;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.44;MQ0=0;MQRankSum=-1.013;NCC=0;QD=16.74;ReadPosRankSum=-0.884;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,40:0.481:0:0,0:0,0:99:0,0:0,0:0:0:1401,0,1524:0,0,0,0:0 +20 10031254 . A AT 1463.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=90;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.09;MQ0=0;NCC=0;QD=16.26;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.553:0:0,0:0,0:99:0,0:0,0:0:0:1501,0,1159:0,0,0,0:0 +20 10031342 . G A 1834.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.833;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.75;MQ0=0;MQRankSum=-0.866;NCC=0;QD=19.73;ReadPosRankSum=-0.240;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,52:0.559:0:0,0:0,0:99:0,0:0,0:0:0:1863,0,1375:0,0,0,0:0 +20 10031798 . G A 4296.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=105;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.60;MQ0=0;NCC=0;QD=29.27;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,105:1.00:0:0,0:0,0:99:0,0:0,0:0:0:4325,313,0:0,0,0,0:0 +20 10031827 . C T 2004.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.552;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.83;MQ0=0;MQRankSum=-0.945;NCC=0;QD=18.56;ReadPosRankSum=-1.430;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,56:0.519:0:0,0:0,0:99:0,0:0,0:0:0:2033,0,1798:0,0,0,0:0 +20 10032094 . G A 1220.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.488;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=14.71;ReadPosRankSum=-0.579;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,36:0.434:0:0,0:0,0:99:0,0:0,0:0:0:1249,0,1497:0,0,0,0:0 +20 10032413 . T G 869.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.142;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.43;MQ0=0;MQRankSum=-0.065;NCC=0;QD=13.18;ReadPosRankSum=-0.945;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,31:0.470:0:0,0:0,0:99:0,0:0,0:0:0:898,0,1277:0,0,0,0:0 +20 10032882 . A T 1202.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.697;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-1.014;NCC=0;QD=16.04;ReadPosRankSum=0.594;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,36:0.480:0:0,0:0,0:99:0,0:0,0:0:0:1231,0,1406:0,0,0,0:0 +20 10032972 . C CAT 1122.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;NCC=0;QD=17.01;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.476:0:0,0:0,0:99:0,0:0,0:0:0:1160,0,1477:0,0,0,0:0 +20 10034306 . T C 782.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.975;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.84;MQ0=0;MQRankSum=-0.432;NCC=0;QD=9.91;ReadPosRankSum=0.437;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:48,31:0.387:0:0,0:0,0:99:0,0:0,0:0:0:811,0,1593:0,0,0,0:0 +20 10036930 . CGATAGCCCTAGCCCTAGATA C 1036.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.30;MQ0=0;NCC=0;QD=13.12;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.426:0:0,0:0,0:99:0,0:0,0:0:0:1074,0,5569:0,0,0,0:0 +20 10037037 . C T 1436.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.504;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.17;MQ0=0;MQRankSum=-1.193;NCC=0;QD=17.52;ReadPosRankSum=-1.504;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,42:0.519:0:0,0:0,0:99:0,0:0,0:0:0:1465,0,1124:0,0,0,0:0 +20 10037110 . T TGATA 2780.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.47;MQ0=0;NCC=0;QD=31.96;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2818,189,0:0,0,0,0:0 +20 10037144 . T TGATAGATA 1823.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=75;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.22;MQ0=0;NCC=0;QD=24.32;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1861,127,0:0,0,0,0:0 +20 10037709 . A T 1003.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.367;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.68;MQ0=0;MQRankSum=0.934;NCC=0;QD=14.14;ReadPosRankSum=0.330;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,32:0.451:0:0,0:0,0:99:0,0:0,0:0:0:1032,0,1354:0,0,0,0:0 +20 10039371 . T G 1324.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.137;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-0.884;NCC=0;QD=17.43;ReadPosRankSum=0.676;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,42:0.541:0:0,0:0,0:99:0,0:0,0:0:0:1353,0,1194:0,0,0,0:0 +20 10040772 . C CT 1995.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.46;MQ0=0;NCC=0;QD=24.95;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2033,210,0:0,0,0,0:0 +20 10040812 . AT A 2607.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.83;MQ0=0;NCC=0;QD=31.42;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2645,214,0:0,0,0,0:0 +20 10040821 . T A 1171.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.17;MQ0=0;MQRankSum=0.220;NCC=0;QD=15.02;ReadPosRankSum=-1.489;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,40:0.513:0:0,0:0,0:99:0,0:0,0:0:0:1200,0,1099:0,0,0,0:0 +20 10041304 . C T 2765.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;NCC=0;QD=35.92;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,71:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2794,204,0:0,0,0,0:0 +20 10041701 . A ATATG 1403.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=58.00;MQ=58.50;MQ0=0;NCC=0;QD=17.55;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.845:0:0,0:0,0:58:0,0:0,0:0:0:1441,0,58:0,0,0,0:0 +20 10042319 . C T 2658.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.61;MQ0=0;NCC=0;QD=29.63;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,67:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2687,199,0:0,0,0,0:0 +20 10042761 . A G 3553.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=93;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.70;MQ0=0;NCC=0;QD=28.76;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,93:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3582,272,0:0,0,0,0:0 +20 10042829 . A G 3055.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.42;MQ0=0;NCC=0;QD=29.94;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3084,235,0:0,0,0,0:0 +20 10043002 . A T 1287.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.986;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=14.97;ReadPosRankSum=-0.209;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:48,38:0.442:0:0,0:0,0:99:0,0:0,0:0:0:1316,0,1659:0,0,0,0:0 +20 10044849 . A G 2091.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=60;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.62;MQ0=0;NCC=0;QD=34.86;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,60:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2120,177,0:0,0,0,0:0 +20 10045078 . G T 3271.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.46;MQ0=0;NCC=0;QD=31.54;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3300,244,0:0,0,0,0:0 +20 10045642 . G C 3138.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.49;MQ0=0;NCC=0;QD=28.86;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,82:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3167,246,0:0,0,0,0:0 +20 10046178 . AAGAAAGAAAG A 2159.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=47.11;MQ0=1;NCC=0;QD=33.75;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2197,153,0:0,0,0,0:0 +20 10046537 . A G 819.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.028;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.18;MQ0=0;MQRankSum=0.542;NCC=0;QD=13.89;ReadPosRankSum=0.592;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,30:0.509:0:0,0:0,0:99:0,0:0,0:0:0:848,0,902:0,0,0,0:0 +20 10050828 . T C 1227.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.855;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;MQRankSum=1.256;NCC=0;QD=13.95;ReadPosRankSum=0.004;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:50,38:0.430:0:0,0:0,0:99:0,0:0,0:0:0:1256,0,1768:0,0,0,0:0 +20 10051448 . T C 1134.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.289;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;MQRankSum=-1.424;NCC=0;QD=15.98;ReadPosRankSum=-0.719;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,35:0.500:0:0,0:0,0:99:0,0:0,0:0:0:1163,0,1150:0,0,0,0:0 +20 10052688 . C A 1062.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.180;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.76;MQ0=0;MQRankSum=0.870;NCC=0;QD=13.80;ReadPosRankSum=1.412;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,32:0.416:0:0,0:0,0:99:0,0:0,0:0:0:1091,0,1645:0,0,0,0:0 +20 10058022 . T C 975.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.81;MQ0=0;MQRankSum=0.931;NCC=0;QD=13.37;ReadPosRankSum=0.039;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,34:0.471:0:0,0:0,0:99:0,0:0,0:0:0:1004,0,1261:0,0,0,0:0 +20 10062935 . C CA 92.84 . AC=1;AF=0.500;AN=2;AS_MQ;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.53;MQ0=1;NCC=0;QD=1.39;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.435:0:0,0:0,0:99:0,0:0,0:0:0:130,0,101:0,0,0,0:0 +20 10067049 . TAAAAAAAA T,TA 614.73 . AC=1,1;AF=0.500,0.500;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.36;MQ0=1;NCC=0;QD=11.38;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/2:0,0,0:0.500,0.409:0:0,0,0:0,0,0:99:0,0,0:0,0,0:0,0:0,0:652,164,339,135,0,106:0,0,0,0:0 +20 10067090 . C A 2004.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=58;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.81;MQ0=0;NCC=0;QD=34.57;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,57:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2033,164,0:0,0,0,0:0 +20 10067264 . G A 2922.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;NCC=0;QD=29.41;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,76:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2951,219,0:0,0,0,0:0 +20 10067722 . A C 2146.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=54;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;NCC=0;QD=31.11;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,54:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2175,163,0:0,0,0,0:0 +20 10068158 . GTGTATATATATA G 66.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=27;ExcessHet=3.0103;FS=0.000;GQ_MEAN=57.00;MQ=57.39;MQ0=0;NCC=0;QD=2.47;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.571:0:0,0:0,0:57:0,0:0,0:0:0:104,0,57:0,0,0,0:0 +20 10068981 . G A 2503.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.20;MQ0=0;NCC=0;QD=34.66;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,64:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2532,184,0:0,0,0,0:0 +20 10070602 . T C 2691.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.73;MQ0=0;NCC=0;QD=29.40;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2720,216,0:0,0,0,0:0 +20 10070936 . T A 3631.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.98;MQ0=0;NCC=0;QD=36.76;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,85:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3660,247,0:0,0,0,0:0 +20 10070938 . G GA 3656.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.09;MQ0=0;NCC=0;QD=30.54;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3694,250,0:0,0,0,0:0 +20 10071135 . C T 3257.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.13;MQ0=0;NCC=0;QD=21.53;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,80:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3286,238,0:0,0,0,0:0 +20 10071187 . G A 3410.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;NCC=0;QD=34.87;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,84:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3439,246,0:0,0,0,0:0 +20 10071890 . T C 1974.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=57;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.67;MQ0=0;NCC=0;QD=34.65;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,57:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2003,171,0:0,0,0,0:0 +20 10072505 . A G 2099.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.58;MQ0=0;NCC=0;QD=31.81;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:1,65:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2128,191,0:0,0,0,0:0 +20 10074187 . A G 3101.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;NCC=0;QD=31.04;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,79:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3130,238,0:0,0,0,0:0 +20 10074240 . T C 3406.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.79;MQ0=0;NCC=0;QD=27.86;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,86:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3435,255,0:0,0,0,0:0 +20 10074716 . G A 2400.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.66;MQ0=0;NCC=0;QD=34.17;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,68:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2429,192,0:0,0,0,0:0 +20 10074806 . G A 2817.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.37;MQ0=0;NCC=0;QD=28.60;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,73:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2846,213,0:0,0,0,0:0 +20 10075043 . T C 2405.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=63;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.27;MQ0=0;NCC=0;QD=25.57;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,63:1.00:0:0,0:0,0:99:0,0:0,0:0:0:2434,184,0:0,0,0,0:0 +20 10075168 . C T 3612.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=89;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.10;MQ0=0;NCC=0;QD=33.11;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,89:1.00:0:0,0:0,0:99:0,0:0,0:0:0:3641,264,0:0,0,0,0:0 +20 10075508 . GA G 1928.73 . AC=2;AF=1.00;AN=2;AS_MQ;DP=81;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.40;MQ0=0;NCC=0;QD=23.81;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,0:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1966,210,0:0,0,0,0:0 +20 10076250 . A G 1107.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.491;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.40;MQ0=0;MQRankSum=-1.441;NCC=0;QD=13.85;ReadPosRankSum=-0.183;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,39:0.494:0:0,0:0,0:99:0,0:0,0:0:0:1136,0,1339:0,0,0,0:0 +20 10076339 . A G 1309.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.37;MQ0=0;MQRankSum=0.157;NCC=0;QD=17.94;ReadPosRankSum=0.821;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:33,40:0.556:0:0,0:0,0:99:0,0:0,0:0:0:1338,0,1035:0,0,0,0:0 +20 10076399 . G A 1807.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.274;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.03;ReadPosRankSum=-0.951;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,50:0.532:0:0,0:0,0:99:0,0:0,0:0:0:1836,0,1544:0,0,0,0:0 +20 10076989 . CA C 221.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.32;MQ0=0;NCC=0;QD=3.08;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.429:0:0,0:0,0:99:0,0:0,0:0:0:218,0,332:0,0,0,0:0 +20 10077752 . T C 1345.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.503;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=17.04;ReadPosRankSum=-0.367;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,45:0.570:0:0,0:0,0:99:0,0:0,0:0:0:1374,0,1187:0,0,0,0:0 +20 10079476 . T G 11.12 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.512;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;GQ_MEAN=39.00;MQ=58.21;MQ0=0;MQRankSum=-1.771;NCC=0;QD=0.21;ReadPosRankSum=-4.216;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,18:0.250:0:0,0:0,0:39:0,0:0,0:0:0:39,0,1137:0,0,0,0:0 +20 10081750 . C A 1353.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.670;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=16.31;ReadPosRankSum=-0.420;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,39:0.470:0:0,0:0,0:99:0,0:0,0:0:0:1382,0,1525:0,0,0,0:0 +20 10081800 . C T 1109.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=15.85;ReadPosRankSum=-2.449;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,34:0.485:0:0,0:0,0:99:0,0:0,0:0:0:1138,0,1222:0,0,0,0:0 +20 10082892 . C T 1712.77 . AC=2;AF=1.00;AN=2;AS_MQ;DP=44;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.48;MQ0=0;NCC=0;QD=30.20;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 1/1:0,44:1.00:0:0,0:0,0:99:0,0:0,0:0:0:1741,132,0:0,0,0,0:0 +20 10085211 . A T 1210.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.293;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.46;MQ0=0;MQRankSum=-0.093;NCC=0;QD=15.72;ReadPosRankSum=-1.226;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,36:0.474:0:0,0:0,0:99:0,0:0,0:0:0:1239,0,1443:0,0,0,0:0 +20 10086110 . G A 1274.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.545;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.89;MQ0=0;MQRankSum=-0.657;NCC=0;QD=15.18;ReadPosRankSum=0.172;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:44,40:0.469:0:0,0:0,0:99:0,0:0,0:0:0:1303,0,1506:0,0,0,0:0 +20 10086283 . G T 1025.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.379;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=12.07;ReadPosRankSum=2.071;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,33:0.381:0:0,0:0,0:99:0,0:0,0:0:0:1054,0,1771:0,0,0,0:0 +20 10086619 . T A 796.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.487;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.31;MQ0=0;MQRankSum=-0.387;NCC=0;QD=10.77;ReadPosRankSum=0.340;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,27:0.357:0:0,0:0,0:99:0,0:0,0:0:0:825,0,1603:0,0,0,0:0 +20 10086853 . G A 1002.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.915;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.79;MQ0=0;MQRankSum=-0.177;NCC=0;QD=13.02;ReadPosRankSum=-0.245;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:43,34:0.438:0:0,0:0,0:99:0,0:0,0:0:0:1031,0,1280:0,0,0,0:0 +20 10086954 . G A 1095.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.606;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=15.88;ReadPosRankSum=-0.657;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,35:0.500:0:0,0:0,0:99:0,0:0,0:0:0:1124,0,1051:0,0,0,0:0 +20 10087230 . A G 1842.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.407;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.88;MQ0=0;MQRankSum=1.707;NCC=0;QD=19.20;ReadPosRankSum=0.484;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,54:0.563:0:0,0:0,0:99:0,0:0,0:0:0:1871,0,1428:0,0,0,0:0 +20 10087394 . T G 1688.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.437;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.73;MQ0=0;MQRankSum=1.190;NCC=0;QD=19.87;ReadPosRankSum=0.983;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,49:0.583:0:0,0:0,0:99:0,0:0,0:0:0:1717,0,1186:0,0,0,0:0 +20 10087754 . T G 1347.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.38;MQ0=0;MQRankSum=2.140;NCC=0;QD=16.64;ReadPosRankSum=-0.768;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,44:0.526:0:0,0:0,0:99:0,0:0,0:0:0:1376,0,1239:0,0,0,0:0 +20 10087804 . C T 1619.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.940;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.36;MQ0=0;MQRankSum=2.618;NCC=0;QD=15.88;ReadPosRankSum=0.893;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:51,51:0.500:0:0,0:0,0:99:0,0:0,0:0:0:1648,0,1511:0,0,0,0:0 +20 10087820 . C CAG 428.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=96;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.31;MQ0=0;NCC=0;QD=4.47;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.327:0:0,0:0,0:99:0,0:0,0:0:0:466,0,1169:0,0,0,0:0 +20 10088063 . C T 1417.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.214;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.17;MQ0=0;MQRankSum=0.503;NCC=0;QD=14.92;ReadPosRankSum=0.662;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:51,44:0.473:0:0,0:0,0:99:0,0:0,0:0:0:1446,0,1403:0,0,0,0:0 +20 10088699 . C T 776.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.018;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=54.23;MQ0=0;MQRankSum=-2.897;NCC=0;QD=11.26;ReadPosRankSum=-0.883;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:41,28:0.419:0:0,0:0,0:99:0,0:0,0:0:0:805,0,1088:0,0,0,0:0 +20 10088730 . G A 972.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.123;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.33;MQ0=0;MQRankSum=-5.029;NCC=0;QD=17.07;ReadPosRankSum=0.399;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:30,27:0.442:0:0,0:0,0:99:0,0:0,0:0:0:1001,0,1152:0,0,0,0:0 +20 10088736 . A C 1081.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.85;MQ0=0;MQRankSum=-5.075;NCC=0;QD=18.34;ReadPosRankSum=0.249;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:30,29:0.491:0:0,0:0,0:99:0,0:0,0:0:0:1110,0,1194:0,0,0,0:0 +20 10088747 . A G 1111.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-3.578;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.12;MQ0=0;MQRankSum=-4.708;NCC=0;QD=19.85;ReadPosRankSum=-0.058;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,30:0.537:0:0,0:0,0:99:0,0:0,0:0:0:1140,0,995:0,0,0,0:0 +20 10088799 . G A 1018.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.675;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.08;MQ0=0;MQRankSum=-1.830;NCC=0;QD=18.19;ReadPosRankSum=1.503;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:24,32:0.585:0:0,0:0,0:99:0,0:0,0:0:0:1047,0,617:0,0,0,0:0 +20 10088895 . C T 532.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.462;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.09;MQ0=1;MQRankSum=0.577;NCC=0;QD=12.39;ReadPosRankSum=0.933;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,18:0.439:0:0,0:0,0:99:0,0:0,0:0:0:561,0,673:0,0,0,0:0 +20 10088968 . C CAAA 1175.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.38;MQ0=0;NCC=0;QD=16.56;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.434:0:0,0:0,0:99:0,0:0,0:0:0:1213,0,1367:0,0,0,0:0 +20 10088980 . T C 1247.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.957;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.88;MQ0=0;MQRankSum=-5.210;NCC=0;QD=17.09;ReadPosRankSum=1.103;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,34:0.456:0:0,0:0,0:99:0,0:0,0:0:0:1276,0,1627:0,0,0,0:0 +20 10088985 . T C 1178.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.54;MQ0=0;MQRankSum=-5.309;NCC=0;QD=14.03;ReadPosRankSum=1.491;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,38:0.432:0:0,0:0,0:99:0,0:0,0:0:0:1207,0,1729:0,0,0,0:0 +20 10089441 . A G 1179.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.874;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.12;MQ0=0;MQRankSum=-0.948;NCC=0;QD=15.13;ReadPosRankSum=-0.286;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:38,40:0.513:0:0,0:0,0:99:0,0:0,0:0:0:1208,0,1313:0,0,0,0:0 +20 10089525 . C T 1548.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.738;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.96;MQ0=0;MQRankSum=0.160;NCC=0;QD=18.22;ReadPosRankSum=0.960;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,46:0.531:0:0,0:0,0:99:0,0:0,0:0:0:1577,0,1088:0,0,0,0:0 +20 10090289 . CA C 384.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.88;MQ0=0;NCC=0;QD=4.93;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.632:0:0,0:0,0:99:0,0:0,0:0:0:422,0,230:0,0,0,0:0 +20 10090764 . A G 840.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.561;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=12.93;ReadPosRankSum=0.803;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,30:0.460:0:0,0:0,0:99:0,0:0,0:0:0:869,0,1207:0,0,0,0:0 +20 10090970 . T C 1257.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.47;MQ0=0;MQRankSum=1.486;NCC=0;QD=17.72;ReadPosRankSum=-0.123;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,37:0.522:0:0,0:0,0:99:0,0:0,0:0:0:1286,0,1092:0,0,0,0:0 +20 10091214 . C T 1249.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.75;MQ0=0;MQRankSum=-0.934;NCC=0;QD=16.44;ReadPosRankSum=-0.149;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:36,40:0.529:0:0,0:0,0:99:0,0:0,0:0:0:1278,0,1110:0,0,0,0:0 +20 10092415 . A G 1635.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-6.731;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.77;MQ0=0;MQRankSum=0.000;NCC=0;QD=16.04;ReadPosRankSum=0.510;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:52,50:0.485:0:0,0:0,0:99:0,0:0,0:0:0:1664,0,1902:0,0,0,0:0 +20 10092927 . G T 106.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.507;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.11;MQ0=0;MQRankSum=-3.009;NCC=0;QD=1.39;ReadPosRankSum=-3.684;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:61,16:0.181:0:0,0:0,0:99:0,0:0,0:0:0:135,0,1864:0,0,0,0:0 +20 10093568 . GT G 326.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.30;MQ0=1;NCC=0;QD=5.27;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.488:0:0,0:0,0:99:0,0:0,0:0:0:364,0,386:0,0,0,0:0 +20 10093923 . T A 1075.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.667;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.19;MQ0=0;MQRankSum=0.358;NCC=0;QD=16.06;ReadPosRankSum=-1.689;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,32:0.478:0:0,0:0,0:99:0,0:0,0:0:0:1104,0,1257:0,0,0,0:0 +20 10094251 . T A 1270.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NCC=0;QD=19.86;ReadPosRankSum=2.029;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:27,37:0.581:0:0,0:0,0:99:0,0:0,0:0:0:1299,0,781:0,0,0,0:0 +20 10094582 . A G 923.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.388;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.07;MQ0=0;MQRankSum=1.270;NCC=0;QD=13.39;ReadPosRankSum=-0.151;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,30:0.435:0:0,0:0,0:99:0,0:0,0:0:0:952,0,1350:0,0,0,0:0 +20 10094774 . C T 1036.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.036;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.41;MQ0=0;MQRankSum=-0.018;NCC=0;QD=13.29;ReadPosRankSum=0.620;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,38:0.467:0:0,0:0,0:99:0,0:0,0:0:0:1065,0,1282:0,0,0,0:0 +20 10095432 . GTGATGATGA G 839.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=76;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.88;MQ0=0;NCC=0;QD=11.05;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.460:0:0,0:0,0:99:0,0:0,0:0:0:877,0,2108:0,0,0,0:0 +20 10095741 . A G 1075.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.10;MQ0=0;MQRankSum=-2.354;NCC=0;QD=14.94;ReadPosRankSum=-0.081;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:37,35:0.486:0:0,0:0,0:99:0,0:0,0:0:0:1104,0,1233:0,0,0,0:0 +20 10096293 . C T 1355.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.580;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.62;MQ0=0;MQRankSum=1.396;NCC=0;QD=17.38;ReadPosRankSum=-0.821;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,39:0.507:0:0,0:0,0:99:0,0:0,0:0:0:1384,0,1258:0,0,0,0:0 +20 10096596 . C T 1562.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=3.048;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.77;MQ0=0;MQRankSum=0.612;NCC=0;QD=17.96;ReadPosRankSum=0.017;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,47:0.540:0:0,0:0,0:99:0,0:0,0:0:0:1591,0,1273:0,0,0,0:0 +20 10096768 . A C 1682.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.764;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.24;MQ0=0;MQRankSum=-1.609;NCC=0;QD=18.49;ReadPosRankSum=0.526;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:42,49:0.538:0:0,0:0,0:99:0,0:0,0:0:0:1711,0,1452:0,0,0,0:0 +20 10096899 . G T 1614.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.809;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.25;MQ0=0;MQRankSum=-0.541;NCC=0;QD=19.94;ReadPosRankSum=0.558;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:40,41:0.506:0:0,0:0,0:99:0,0:0,0:0:0:1643,0,1520:0,0,0,0:0 +20 10096905 . TA T 1600.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=84;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.00;MQ0=0;NCC=0;QD=19.06;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.518:0:0,0:0,0:99:0,0:0,0:0:0:1638,0,1623:0,0,0,0:0 +20 10096933 . G C 1511.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.914;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.83;MQ0=0;MQRankSum=-1.802;NCC=0;QD=17.38;ReadPosRankSum=0.264;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:46,41:0.482:0:0,0:0,0:99:0,0:0,0:0:0:1540,0,1770:0,0,0,0:0 +20 10096958 . G A 1766.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.968;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.91;MQ0=0;MQRankSum=-0.962;NCC=0;QD=18.80;ReadPosRankSum=-1.953;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:47,47:0.511:0:0,0:0,0:99:0,0:0,0:0:0:1795,0,1629:0,0,0,0:0 +20 10097075 . T G 1445.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-2.641;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;MQRankSum=-1.604;NCC=0;QD=15.38;ReadPosRankSum=-0.200;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:45,49:0.522:0:0,0:0,0:99:0,0:0,0:0:0:1474,0,1482:0,0,0,0:0 +20 10097101 . C CTTT 1091.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=80;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.36;MQ0=0;NCC=0;QD=13.65;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.485:0:0,0:0,0:99:0,0:0,0:0:0:1129,0,1306:0,0,0,0:0 +20 10097436 . CTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 1054.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=65;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.82;MQ0=0;NCC=0;QD=16.23;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.360:0:0,0:0,0:99:0,0:0,0:0:0:1092,0,2241:0,0,0,0:0 +20 10097437 . TTTTC T 796.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.92;MQ0=0;NCC=0;QD=12.07;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.418:0:0,0:0,0:99:0,0:0,0:0:0:834,0,1193:0,0,0,0:0 +20 10097626 . C A 626.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.128;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.28;MQ0=0;MQRankSum=-1.371;NCC=0;QD=12.79;ReadPosRankSum=1.079;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:29,20:0.417:0:0,0:0,0:99:0,0:0,0:0:0:655,0,957:0,0,0,0:0 +20 10097789 . T C 688.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.396;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.02;MQ0=0;MQRankSum=-2.744;NCC=0;QD=11.67;ReadPosRankSum=0.134;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:35,24:0.404:0:0,0:0,0:99:0,0:0,0:0:0:717,0,1190:0,0,0,0:0 +20 10097928 . G A 570.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.621;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.79;MQ0=1;MQRankSum=-1.850;NCC=0;QD=14.64;ReadPosRankSum=-0.309;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,21:0.528:0:0,0:0,0:99:0,0:0,0:0:0:599,0,586:0,0,0,0:0 +20 10098110 . G C 586.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.510;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.11;MQ0=0;MQRankSum=-1.477;NCC=0;QD=15.86;ReadPosRankSum=-0.714;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,17:0.472:0:0,0:0,0:99:0,0:0,0:0:0:615,0,727:0,0,0,0:0 +20 10098135 . C A 471.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.155;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.06;MQ0=0;MQRankSum=1.546;NCC=0;QD=12.10;ReadPosRankSum=-0.591;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:25,14:0.368:0:0,0:0,0:99:0,0:0,0:0:0:500,0,964:0,0,0,0:0 +20 10098219 . TATATATA T 295.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=21;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.94;MQ0=0;NCC=0;QD=14.08;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.429:0:0,0:0,0:99:0,0:0,0:0:0:333,0,461:0,0,0,0:0 +20 10098237 . A T 244.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=52.81;MQ0=0;MQRankSum=-2.347;NCC=0;QD=20.40;ReadPosRankSum=1.188;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:7,5:0.538:0:0,0:0,0:99:0,0:0,0:0:0:273,0,273:0,0,0,0:0 +20 10098265 . T C 133.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.645;ClippingRankSum=0.000;DP=6;ExcessHet=3.0103;FS=0.000;GQ_MEAN=59.00;MQ=41.96;MQ0=0;MQRankSum=-1.645;NCC=0;QD=22.30;ReadPosRankSum=0.524;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:2,4:0.667:0:0,0:0,0:59:0,0:0,0:0:0:162,0,59:0,0,0,0:0 +20 10098885 . C CA 433.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=32;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.27;MQ0=1;NCC=0;QD=13.55;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.452:0:0,0:0,0:99:0,0:0,0:0:0:471,0,572:0,0,0,0:0 +20 10098945 . T C 407.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.225;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.09;MQ0=0;MQRankSum=-2.636;NCC=0;QD=17.73;ReadPosRankSum=1.042;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:9,14:0.591:0:0,0:0,0:99:0,0:0,0:0:0:436,0,248:0,0,0,0:0 +20 10098987 . C T 379.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.922;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.88;MQ0=0;MQRankSum=-2.877;NCC=0;QD=15.19;ReadPosRankSum=0.329;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:11,14:0.542:0:0,0:0,0:99:0,0:0,0:0:0:408,0,350:0,0,0,0:0 +20 10099029 . T C 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.864;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.32;MQ0=0;MQRankSum=-3.439;NCC=0;QD=11.96;ReadPosRankSum=-0.361;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,10:0.357:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 +20 10099034 . C A 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.757;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=53.32;MQ0=0;MQRankSum=-3.641;NCC=0;QD=11.96;ReadPosRankSum=-1.515;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:18,10:0.357:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 +20 10099044 . A C 334.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.54;MQ0=0;MQRankSum=-4.268;NCC=0;QD=14.56;ReadPosRankSum=-2.046;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,7:0.375:0:0,0:0,0:99:0,0:0,0:0:0:363,0,768:0,0,0,0:0 +20 10099046 . T C 304.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.984;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=51.12;MQ0=0;MQRankSum=-4.268;NCC=0;QD=13.85;ReadPosRankSum=-2.117;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:15,7:0.375:0:0,0:0,0:99:0,0:0,0:0:0:333,0,603:0,0,0,0:0 +20 10099055 . T C 256.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.71;MQ0=0;MQRankSum=-4.432;NCC=0;QD=9.51;ReadPosRankSum=-2.657;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,11:0.348:0:0,0:0,0:99:0,0:0,0:0:0:285,0,673:0,0,0,0:0 +20 10099079 . C T 116.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=50.38;MQ0=0;MQRankSum=-4.225;NCC=0;QD=3.43;ReadPosRankSum=1.168;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:20,14:0.207:0:0,0:0,0:99:0,0:0,0:0:0:145,0,886:0,0,0,0:0 +20 10099111 . T TTTTGTTTG 656.73 . AC=1;AF=0.500;AN=2;AS_MQ;DP=48;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=49.62;MQ0=0;NCC=0;QD=13.68;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:0,0:0.371:0:0,0:0,0:99:0,0:0,0:0:0:694,0,802:0,0,0,0:0 +20 10099140 . G T 1005.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=0.536;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=55.53;MQ0=0;MQRankSum=-1.610;NCC=0;QD=16.22;ReadPosRankSum=0.896;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:32,30:0.516:0:0,0:0,0:99:0,0:0,0:0:0:1034,0,931:0,0,0,0:0 +20 10099190 . G T 1034.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.89;MQ0=0;MQRankSum=-1.485;NCC=0;QD=16.17;ReadPosRankSum=-0.491;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:33,31:0.492:0:0,0:0,0:99:0,0:0,0:0:0:1063,0,1154:0,0,0,0:0 +20 10099220 . A G 577.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-1.426;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=57.00;MQ0=1;MQRankSum=-2.352;NCC=0;QD=12.56;ReadPosRankSum=0.119;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,20:0.444:0:0,0:0,0:99:0,0:0,0:0:0:606,0,873:0,0,0,0:0 +20 10099250 . G A 699.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=2.980;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=56.00;MQ0=0;MQRankSum=-2.203;NCC=0;QD=18.42;ReadPosRankSum=0.096;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:16,22:0.568:0:0,0:0,0:99:0,0:0,0:0:0:728,0,424:0,0,0,0:0 +20 10099535 . G A 1335.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=5.034;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.01;MQ0=0;MQRankSum=-1.418;NCC=0;QD=20.55;ReadPosRankSum=-0.771;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:26,39:0.600:0:0,0:0,0:99:0,0:0,0:0:0:1364,0,686:0,0,0,0:0 +20 10099565 . C T 1346.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=4.595;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=59.39;MQ0=0;MQRankSum=-1.266;NCC=0;QD=19.52;ReadPosRankSum=1.454;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:31,38:0.551:0:0,0:0,0:99:0,0:0,0:0:0:1375,0,994:0,0,0,0:0 +20 10099755 . C T 1098.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=1.866;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.35;MQ0=0;MQRankSum=-0.046;NCC=0;QD=16.16;ReadPosRankSum=-0.245;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:34,34:0.492:0:0,0:0,0:99:0,0:0,0:0:0:1127,0,1148:0,0,0,0:0 +20 10099832 . A G 1073.77 . AC=1;AF=0.500;AN=2;AS_MQ;BaseQRankSum=-4.563;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;GQ_MEAN=99.00;MQ=58.96;MQ0=0;MQRankSum=0.869;NCC=0;QD=14.91;ReadPosRankSum=-0.882;SOR=0.693;Samples=NA12878 GT:AD:AF:DP:F1R2:F2R1:GQ:MBQ:MFRL:MMQ:MPOS:PL:SB:UNIQ_ALT_READ_COUNT 0/1:39,33:0.458:0:0,0:0,0:99:0,0:0,0:0:0:1102,0,1430:0,0,0,0:0