From 61c68913fa40cb2f902d15b01d84f20b36ae9e8a Mon Sep 17 00:00:00 2001 From: chandrans Date: Fri, 11 May 2018 16:12:32 -0400 Subject: [PATCH] minor doc change for -tranche argument (#4517) * minor doc change for -tranche argument --- .../hellbender/tools/walkers/vqsr/VariantRecalibrator.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/VariantRecalibrator.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/VariantRecalibrator.java index 5d42cc7a1f3..b30d1b646b6 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/VariantRecalibrator.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/VariantRecalibrator.java @@ -235,6 +235,7 @@ public class VariantRecalibrator extends MultiVariantWalker { * Add truth sensitivity slices through the call set at the given values. The default values are 100.0, 99.9, 99.0, and 90.0 * which will result in 4 estimated tranches in the final call set: the full set of calls (100% sensitivity at the accessible * sites in the truth set), a 99.9% truth sensitivity tranche, along with progressively smaller tranches at 99% and 90%. + * Note: You must pass in each tranche as a separate value (e.g. -tranche 100.0 -tranche 99.9). */ @Argument(fullName="truth-sensitivity-tranche", shortName="tranche",