From 89ea9e01225db5c9bbe262c888a0abb74509f94c Mon Sep 17 00:00:00 2001
From: "Michael R. Crusoe" <1330696+mr-c@users.noreply.github.com>
Date: Fri, 11 Jan 2019 23:11:43 +0200
Subject: [PATCH] add GATK to docker CLASSPATH (#3866)

* add gatk.jar to CLASSPATH in the docker
---
 Dockerfile | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Dockerfile b/Dockerfile
index 7b7541e5a76..1979ec2c9ac 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -40,6 +40,7 @@ RUN echo "source activate gatk" > /root/run_unit_tests.sh && \
 WORKDIR /root
 RUN cp -r /root/run_unit_tests.sh /gatk
 RUN cp -r gatk.jar /gatk
+ENV CLASSPATH /gatk/gatk.jar:$CLASSPATH
 RUN cp -r install_R_packages.R /gatk
 
 # Start GATK Python environment