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A double query is being performed to smooth over the chr/non-chr b/w b37 and hg19 and GENCODE #4798

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LeeTL1220 opened this issue May 22, 2018 · 0 comments

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LeeTL1220 commented May 22, 2018

Every datasource is checked twice, once w/o "chr" and once with it. This seems like overkill and inefficient. Several solutions could be implemented:

Detect which is relevant and only search those.
Limit the searching to GENCODE only -- as opposed to all datasources.

LeeTL1220 added the Funcotator label

LeeTL1220 mentioned this issue

More funcotator fixes #4783

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