From b81b2903a9e5d0c0d2a24cb11b54a88e134e59ce Mon Sep 17 00:00:00 2001 From: Tom White Date: Mon, 10 Jun 2019 11:18:13 +0100 Subject: [PATCH 1/2] Upgrade to Spark 2.4.3 --- build.gradle | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/build.gradle b/build.gradle index d6408721965..c4356432603 100644 --- a/build.gradle +++ b/build.gradle @@ -61,7 +61,7 @@ final requiredJavaVersion = "8" final htsjdkVersion = System.getProperty('htsjdk.version','2.19.0') final picardVersion = System.getProperty('picard.version','2.19.0') final barclayVersion = System.getProperty('barclay.version','2.1.0') -final sparkVersion = System.getProperty('spark.version', '2.2.0') +final sparkVersion = System.getProperty('spark.version', '2.4.3') final hadoopVersion = System.getProperty('hadoop.version', '2.8.2') final disqVersion = System.getProperty('disq.version','0.3.1') final genomicsdbVersion = System.getProperty('genomicsdb.version','1.0.4') From 9f5256b540ee7928e37ba282d09cd42e5ee8c3c7 Mon Sep 17 00:00:00 2001 From: Tom White Date: Tue, 11 Jun 2019 17:13:58 +0100 Subject: [PATCH 2/2] Fix 'Could not serialize lambda' by downgrading twitter chill to 0.8.1 from 0.8.4 --- build.gradle | 1 + 1 file changed, 1 insertion(+) diff --git a/build.gradle b/build.gradle index c4356432603..740e0736c42 100644 --- a/build.gradle +++ b/build.gradle @@ -156,6 +156,7 @@ configurations.all { // force testng dependency so we don't pick up a different version via GenomicsDB force 'org.testng:testng:' + testNGVersion force 'org.broadinstitute:barclay:' + barclayVersion + force 'com.twitter:chill_2.11:0.8.1' // make sure we don't pick up an incorrect version of the GATK variant of the google-nio library // via Picard, etc.