Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Consensus profiles are missing MOA and target information #49

Closed
shntnu opened this issue May 30, 2020 · 2 comments
Closed

Consensus profiles are missing MOA and target information #49

shntnu opened this issue May 30, 2020 · 2 comments
Labels
enhancement New feature or request

Comments

@shntnu
Copy link
Collaborator

shntnu commented May 30, 2020

@gwaygenomics Were MOA and target columns left out intentionally?

lincs-cell-painting/consensus/scripts/nbconverted/build-consensus-signatures.py

Lines 152 to 158 in e6852b4

replicate_cols = [
"Metadata_Plate_Map_Name",
"Metadata_broad_sample",
"Metadata_pert_well",
"Metadata_mmoles_per_liter",
"Metadata_dose_recode",
]

These columns are not present

Metadata_moa
Metadata_target

and other cool stuff you'd find in `*_augmented.csv" files
@shntnu shntnu added the enhancement New feature or request label May 30, 2020
@shntnu shntnu changed the title MOA information in consensus Consensus profiles are missing MOA and target information May 30, 2020
@gwaybio
Copy link
Member

gwaybio commented May 30, 2020

Were MOA and target columns left out intentionally?

Nope, not intentional. Let's add them back

@gwaybio gwaybio mentioned this issue Mar 9, 2021
Merged
@gwaybio
Copy link
Member

gwaybio commented May 21, 2021

fixed in #63

@gwaybio gwaybio closed this as completed May 21, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@shntnu @gwaybio