Releases: broadinstitute/warp
Releases · broadinstitute/warp
ExomeReprocessing_v2.1.0
2.1.0
2020-08-18
- Added a meta section with 'allowNestedInputs' set to 'true' to allow the workflow to use with nested inputs with Cromwell 52
Arrays_v2.1.0
2.1.0
2020-08-18
- Added a meta section with 'allowNestedInputs' set to 'true' to allow the workflow to use with nested inputs with Cromwell 52
AnnotationFiltration_v1.1.0
1.1.0
2020-08-18
- Added a meta section with 'allowNestedInputs' set to 'true' to allow the workflow to use with nested inputs with Cromwell 52
scATAC_develop
1.3.2
2023-08-03 (Date of Last Commit)
- Updated MakeCompliantBAM to decode the fragChrom column in the fragments.csv file
- Updated the us.gcr.io/broad-gotc-prod/snaptools-bwa docker image throughout the scATAC pipeline to patch a security vulnerability
scATAC_v1.1.0
1.1.0
2020-08-24 (Date of Last Commit)
- Added bin_size_list as an optional input to the scATAC workflow with a default of 10,000 bp
SmartSeq2SingleSample_v5.0.0
5.0.0
2020-08-10 (Date of Last Commit)
Breaking changes
- Changed sample_name to input_id
Non-breaking changes
- Added input_name as an optional input for user provided biomaterial id.
- Passed pipeline_version to output loom file
- Added input_id_metadata_field and input_name_metadata_field as optional input
Optimus_v4.0.0
4.0.0
2020-08-10 (Date of Last Commit)
Breaking changes
- Changed sample_id to input_id
Non-breaking changes
- Added input_name as an optional input for user provided sample_id
- Passed pipeline_version to output loom file
- Added input_id_metadata_field and input_name_metadata_field as optional input
MultiSampleSmartSeq2_v2.1.0
2.1.0
2020-08-10 (Date of Last Commit)
Non-breaking changes
- Added batch_name as an optional input for user provided biomaterial id
- Passed pipeline_version to output loom file
- Added input_id_metadata_field and input_name_metadata_field as optional input
Arrays_v2.0
2.0
2020-07-31
- Fix bug in VcfToMercuryFingerprintJson task where the metrics file is being parsed incorrectly
if there is a space in the sample name value
Optimus_v3.0.1
3.0.1
2020-07-21
- Changed the imports to relative imports to support Dockstore->Terra release
- This version and all future versions have been scientifically validated on 10X 3' snRNAseq data for all supported references