poetry.lock

[[package]]
name = "aiobotocore"
version = "2.4.0"
description = "Async client for aws services using botocore and aiohttp"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
aiohttp = ">=3.3.1"
aioitertools = ">=0.5.1"
botocore = ">=1.27.59,<1.27.60"
wrapt = ">=1.10.10"

[package.extras]
awscli = ["awscli (>=1.25.60,<1.25.61)"]
boto3 = ["boto3 (>=1.24.59,<1.24.60)"]

[[package]]
name = "aiohttp"
version = "3.8.3"
description = "Async http client/server framework (asyncio)"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
aiosignal = ">=1.1.2"
async-timeout = ">=4.0.0a3,<5.0"
attrs = ">=17.3.0"
charset-normalizer = ">=2.0,<3.0"
frozenlist = ">=1.1.1"
multidict = ">=4.5,<7.0"
yarl = ">=1.0,<2.0"

[package.extras]
speedups = ["aiodns", "brotli", "cchardet"]

[[package]]
name = "aioitertools"
version = "0.11.0"
description = "itertools and builtins for AsyncIO and mixed iterables"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
typing_extensions = {version = ">=4.0", markers = "python_version < \"3.10\""}

[[package]]
name = "aiosignal"
version = "1.2.0"
description = "aiosignal: a list of registered asynchronous callbacks"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
frozenlist = ">=1.1.0"

[[package]]
name = "alabaster"
version = "0.7.12"
description = "A configurable sidebar-enabled Sphinx theme"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "alphashape"
version = "1.3.1"
description = "Toolbox for generating alpha shapes."
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
Click = ">=6.0"
click-log = ">=0.3.2"
networkx = ">=2.5"
numpy = ">=1.8.0"
rtree = ">=0.9.7"
scipy = ">=1.0.0"
shapely = ">=1.4.0"
trimesh = ">=3.9.8"

[[package]]
name = "appnope"
version = "0.1.3"
description = "Disable App Nap on macOS >= 10.9"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "asttokens"
version = "2.0.8"
description = "Annotate AST trees with source code positions"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
six = "*"

[package.extras]
test = ["astroid (<=2.5.3)", "pytest"]

[[package]]
name = "async-timeout"
version = "4.0.2"
description = "Timeout context manager for asyncio programs"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "attrs"
version = "22.1.0"
description = "Classes Without Boilerplate"
category = "main"
optional = false
python-versions = ">=3.5"

[package.extras]
dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"]

[[package]]
name = "babel"
version = "2.10.3"
description = "Internationalization utilities"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
pytz = ">=2015.7"

[[package]]
name = "backcall"
version = "0.2.0"
description = "Specifications for callback functions passed in to an API"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "botocore"
version = "1.27.59"
description = "Low-level, data-driven core of boto 3."
category = "main"
optional = false
python-versions = ">= 3.7"

[package.dependencies]
jmespath = ">=0.7.1,<2.0.0"
python-dateutil = ">=2.1,<3.0.0"
urllib3 = ">=1.25.4,<1.27"

[package.extras]
crt = ["awscrt (==0.14.0)"]

[[package]]
name = "bson"
version = "0.5.10"
description = "BSON codec for Python"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
python-dateutil = ">=2.4.0"
six = ">=1.9.0"

[[package]]
name = "certifi"
version = "2022.9.14"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "cffi"
version = "1.15.1"
description = "Foreign Function Interface for Python calling C code."
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
pycparser = "*"

[[package]]
name = "charset-normalizer"
version = "2.1.1"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
category = "main"
optional = false
python-versions = ">=3.6.0"

[package.extras]
unicode_backport = ["unicodedata2"]

[[package]]
name = "click"
version = "8.1.3"
description = "Composable command line interface toolkit"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}

[[package]]
name = "click-log"
version = "0.4.0"
description = "Logging integration for Click"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
click = "*"

[[package]]
name = "colorama"
version = "0.4.5"
description = "Cross-platform colored terminal text."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
name = "contourpy"
version = "1.0.5"
description = "Python library for calculating contours of 2D quadrilateral grids"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
numpy = ">=1.16"

[package.extras]
test-no-codebase = ["pillow", "matplotlib", "pytest"]
test-minimal = ["pytest"]
test = ["isort", "flake8", "pillow", "matplotlib", "pytest"]
docs = ["sphinx-rtd-theme", "sphinx", "docutils (<0.18)"]
bokeh = ["selenium", "bokeh"]

[[package]]
name = "coverage"
version = "6.4.4"
description = "Code coverage measurement for Python"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}

[package.extras]
toml = ["tomli"]

[[package]]
name = "cycler"
version = "0.11.0"
description = "Composable style cycles"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "cython"
version = "0.29.32"
description = "The Cython compiler for writing C extensions for the Python language."
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "cytotools"
version = "0.1.21"
description = "A small package of utilities for analysis of cytometry data in Python"
category = "main"
optional = false
python-versions = ">=3.8,<4.0"

[package.dependencies]
alphashape = ">=1.3.1,<2.0.0"
bson = ">=0.5.10,<0.6.0"
coverage = ">=6.4.1,<7.0.0"
detecta = ">=0.0.5,<0.0.6"
FlowIO = ">=1.0.1,<2.0.0"
FlowUtils = ">=1.0.0,<2.0.0"
ipython = ">=8.4.0,<9.0.0"
KDEpy = ">=1.1.0,<2.0.0"
numpy = ">=1.22.4,<2.0.0"
pandas = ">=1.4.2,<2.0.0"
phate = ">=1.0.8,<2.0.0"
polars = ">=0.13.49,<0.14.0"
pyarrow = ">=8.0.0,<9.0.0"
pytest = ">=7.1.2,<8.0.0"
pytest-cov = ">=3.0.0,<4.0.0"
s3fs = ">=2022.5.0,<2023.0.0"
scikit-fda = ">=0.7.1,<0.8.0"
scikit-learn = ">=1.0.1,<1.1.0"
Shapely = ">=1.8.2,<2.0.0"
Sphinx = ">=5.0.2,<6.0.0"
sphinx-rtd-theme = ">=1.0.0,<2.0.0"
tqdm = ">=4.64.0,<5.0.0"
umap-learn = ">=0.5.3,<0.6.0"

[[package]]
name = "dcor"
version = "0.5.7"
description = "dcor: distance correlation and related E-statistics in Python."
category = "main"
optional = false
python-versions = ">=3.8"

[package.dependencies]
joblib = "*"
numba = ">=0.51"
numpy = "*"
scipy = "*"

[package.extras]
test = ["pytest", "pytest-cov", "pytest-subtests", "numpy (>=1.22)", "numba (<=0.53.1)"]

[[package]]
name = "decorator"
version = "5.1.1"
description = "Decorators for Humans"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "deprecated"
version = "1.2.13"
description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.dependencies]
wrapt = ">=1.10,<2"

[package.extras]
dev = ["tox", "bump2version (<1)", "sphinx (<2)", "importlib-metadata (<3)", "importlib-resources (<4)", "configparser (<5)", "sphinxcontrib-websupport (<2)", "zipp (<2)", "PyTest (<5)", "PyTest-Cov (<2.6)", "pytest", "pytest-cov"]

[[package]]
name = "detecta"
version = "0.0.5"
description = "Detect events in data"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "docutils"
version = "0.17.1"
description = "Docutils -- Python Documentation Utilities"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
name = "executing"
version = "1.0.0"
description = "Get the currently executing AST node of a frame, and other information"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "fdasrsf"
version = "2.3.11"
description = "functional data analysis using the square root slope framework"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
cffi = ">=1.0.0"
Cython = "*"
GPy = "*"
joblib = "*"
matplotlib = "*"
numba = "*"
numpy = "*"
patsy = "*"
pyparsing = "*"
scipy = "*"
six = "*"
tqdm = "*"

[[package]]
name = "findiff"
version = "0.9.2"
description = "A Python package for finite difference derivatives in any number of dimensions."
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
numpy = "*"
scipy = "*"
sympy = "*"

[[package]]
name = "flowio"
version = "1.0.1"
description = "FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "flowutils"
version = "1.0.0"
description = "Flow Cytometry Standard Utilities"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
numpy = ">=1.20"

[[package]]
name = "fonttools"
version = "4.37.3"
description = "Tools to manipulate font files"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"]
graphite = ["lz4 (>=1.7.4.2)"]
interpolatable = ["scipy", "munkres"]
lxml = ["lxml (>=4.0,<5)"]
pathops = ["skia-pathops (>=0.5.0)"]
plot = ["matplotlib"]
repacker = ["uharfbuzz (>=0.23.0)"]
symfont = ["sympy"]
type1 = ["xattr"]
ufo = ["fs (>=2.2.0,<3)"]
unicode = ["unicodedata2 (>=14.0.0)"]
woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"]

[[package]]
name = "frozenlist"
version = "1.3.1"
description = "A list-like structure which implements collections.abc.MutableSequence"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "fsspec"
version = "2022.8.2"
description = "File-system specification"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
abfs = ["adlfs"]
adl = ["adlfs"]
arrow = ["pyarrow (>=1)"]
dask = ["dask", "distributed"]
dropbox = ["dropboxdrivefs", "requests", "dropbox"]
entrypoints = ["importlib-metadata"]
fuse = ["fusepy"]
gcs = ["gcsfs"]
git = ["pygit2"]
github = ["requests"]
gs = ["gcsfs"]
gui = ["panel"]
hdfs = ["pyarrow (>=1)"]
http = ["requests", "aiohttp (!=4.0.0a0,!=4.0.0a1)"]
libarchive = ["libarchive-c"]
oci = ["ocifs"]
s3 = ["s3fs"]
sftp = ["paramiko"]
smb = ["smbprotocol"]
ssh = ["paramiko"]
tqdm = ["tqdm"]

[[package]]
name = "future"
version = "0.18.2"
description = "Clean single-source support for Python 3 and 2"
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "gpy"
version = "1.10.0"
description = "The Gaussian Process Toolbox"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
cython = ">=0.29"
numpy = ">=1.7"
paramz = ">=0.9.0"
scipy = ">=1.3.0"
six = "*"

[package.extras]
docs = ["sphinx"]
notebook = ["jupyter_client (>=4.0.6)", "ipywidgets (>=4.0.3)", "ipykernel (>=4.1.0)", "notebook (>=4.0.5)"]
optional = ["mpi4py", "ipython (>=4.0.0)"]
plotting = ["matplotlib (>=3.0)", "plotly (>=1.8.6)"]

[[package]]
name = "graphtools"
version = "1.5.2"
description = "graphtools"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
Deprecated = "*"
future = "*"
numpy = ">=1.14.0"
pygsp = ">=0.5.1"
scikit-learn = ">=0.20.0"
scipy = ">=1.1.0"
tasklogger = ">=1.0"

[package.extras]
doc = ["sphinx", "sphinxcontrib-napoleon", "sphinxcontrib-bibtex"]
test = ["nose", "nose2", "pandas", "coverage", "coveralls", "python-igraph", "parameterized", "anndata", "black"]

[[package]]
name = "idna"
version = "3.4"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "imagesize"
version = "1.4.1"
description = "Getting image size from png/jpeg/jpeg2000/gif file"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "importlib-metadata"
version = "4.12.0"
description = "Read metadata from Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
zipp = ">=0.5"

[package.extras]
docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
perf = ["ipython"]
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]

[[package]]
name = "iniconfig"
version = "1.1.1"
description = "iniconfig: brain-dead simple config-ini parsing"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "ipython"
version = "8.5.0"
description = "IPython: Productive Interactive Computing"
category = "main"
optional = false
python-versions = ">=3.8"

[package.dependencies]
appnope = {version = "*", markers = "sys_platform == \"darwin\""}
backcall = "*"
colorama = {version = "*", markers = "sys_platform == \"win32\""}
decorator = "*"
jedi = ">=0.16"
matplotlib-inline = "*"
pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
pickleshare = "*"
prompt-toolkit = ">3.0.1,<3.1.0"
pygments = ">=2.4.0"
stack-data = "*"
traitlets = ">=5"

[package.extras]
all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"]
black = ["black"]
doc = ["Sphinx (>=1.3)"]
kernel = ["ipykernel"]
nbconvert = ["nbconvert"]
nbformat = ["nbformat"]
notebook = ["ipywidgets", "notebook"]
parallel = ["ipyparallel"]
qtconsole = ["qtconsole"]
test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"]

[[package]]
name = "jedi"
version = "0.18.1"
description = "An autocompletion tool for Python that can be used for text editors."
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
parso = ">=0.8.0,<0.9.0"

[package.extras]
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"]
testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"]

[[package]]
name = "jinja2"
version = "3.1.2"
description = "A very fast and expressive template engine."
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
MarkupSafe = ">=2.0"

[package.extras]
i18n = ["Babel (>=2.7)"]

[[package]]
name = "jmespath"
version = "1.0.1"
description = "JSON Matching Expressions"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "joblib"
version = "1.2.0"
description = "Lightweight pipelining with Python functions"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "kdepy"
version = "1.1.0"
description = "Kernel Density Estimation in Python."
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
matplotlib = ">=2.2.0"
numpy = ">=1.14.2"
scipy = ">=1.0.1"

[[package]]
name = "kiwisolver"
version = "1.4.4"
description = "A fast implementation of the Cassowary constraint solver"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "llvmlite"
version = "0.39.1"
description = "lightweight wrapper around basic LLVM functionality"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "markupsafe"
version = "2.1.1"
description = "Safely add untrusted strings to HTML/XML markup."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "matplotlib"
version = "3.6.0"
description = "Python plotting package"
category = "main"
optional = false
python-versions = ">=3.8"

[package.dependencies]
contourpy = ">=1.0.1"
cycler = ">=0.10"
fonttools = ">=4.22.0"
kiwisolver = ">=1.0.1"
numpy = ">=1.19"
packaging = ">=20.0"
pillow = ">=6.2.0"
pyparsing = ">=2.2.1"
python-dateutil = ">=2.7"
setuptools_scm = ">=7"

[[package]]
name = "matplotlib-inline"
version = "0.1.6"
description = "Inline Matplotlib backend for Jupyter"
category = "main"
optional = false
python-versions = ">=3.5"

[package.dependencies]
traitlets = "*"

[[package]]
name = "mpmath"
version = "1.2.1"
description = "Python library for arbitrary-precision floating-point arithmetic"
category = "main"
optional = false
python-versions = "*"

[package.extras]
develop = ["pytest (>=4.6)", "pycodestyle", "pytest-cov", "codecov", "wheel"]
tests = ["pytest (>=4.6)"]

[[package]]
name = "multidict"
version = "6.0.2"
description = "multidict implementation"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "multimethod"
version = "1.9"
description = "Multiple argument dispatching."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "networkx"
version = "2.8.6"
description = "Python package for creating and manipulating graphs and networks"
category = "main"
optional = false
python-versions = ">=3.8"

[package.extras]
default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"]
developer = ["pre-commit (>=2.20)", "mypy (>=0.961)"]
doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"]
test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"]

[[package]]
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