v5.4.1

🧬 Features

• Discrete molecular data counts @h164654156465 (#4706)

✨ Enhancements

• Add property to define custom sample type colors in patient view @BasLee (#4704)
• Improve non-profiled gene panel links in oncoprint tooltip @BasLee (#4701)
• Fix hidden non-genomic data when excluding VUS in oncoprint @BasLee (#4712)
• Extend sample type colors in patient view @BasLee (#4679)

🏎 Performance Tweaks

• Significantly reduce loading time for mutations table in comparison page @gblaih (#4714)

👷‍♀️ Testing, Configuration & Deployment

• Update API clients and fix screenshots after Oncobk update @alisman (#4715)
• Add e2e tests for Interactive Web Tour @Beking0912 (#4700)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.4.0...v5.4.1
• Frontend: v5.4.0...v5.4.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.4.0

✨ Enhancements

• Enhancements to patient page @kalletlak (#4695)

👷‍♀️ Testing, Configuration & Deployment

• Update mysql 8 connection string for localdb tests @dippindots (#4710)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.19...v5.4.0
• Frontend: v5.3.19...v5.4.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.19

🧬 Features

• Add Interactive Web Tour for Virtual Studies and Group Comparison @Beking0912 (#4687)

🐛 Bug Fixes

• Replace twitter with news feed @alisman (#4685)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e tests that use study view charts button @gblaih (#4698)
• update screenshots after addition of ancestry data @alisman (#4697)
• Update jitpack-build for pre-release @dippindots (#4696)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.18...v5.3.19
• Frontend: v5.3.18...v5.3.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.18

🐛 Bug Fixes

• Fix pathway table page reset issue @gorkemsolun (#4678)
• bug fix: case no meta data from mutational signatures endpoint @TJMKuijpers (#4692)
• Fix mutated and total profiled patient counts in comparison mutations table and lollipop tooltip @gblaih (#4691)

👷‍♀️ Testing, Configuration & Deployment

• Adding jitpack build script and label check test for pull request @dippindots (#4688)
• Add defaults for mutation heatmap and line chart checkboxes @BasLee (#4680 #4694)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.17...v5.3.18
• Frontend: v5.3.17...v5.3.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.17

✨ Enhancements

• Update q value banner language and placement @alisman (#4683)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots @alisman (#4684)
• Fix color chooser e2e test after update to group pill style @alisman (#4681)

🧰 Maintenance

• Add a banner announcing introduction of two-sided exact test @alisman (#4682)
• Update pathway mapper version to 2.3.0 @onursumer (#4631)

📐 Prototype (Internal Use)

• RFC68: Impl. structural variants table in Study View @pvannierop (#4577)
• Feature to visualize mutational counts for mutational signatures @TJMKuijpers (#4540)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.16...v5.3.17
• Frontend: v5.3.16...v5.3.17

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.16

✨ Enhancements

• Persist text color on icon in group comparison buttons @zhx828 (#4663)
• Add VEP link in reVUE tooltip @leexgh (#4661)

🐛 Bug Fixes

• Fix Study view charts layout reset on any operation @kalletlak (#4674)

👷‍♀️ Testing, Configuration & Deployment

• Fix api clients and update screenshot after gene update @alisman (#4675)

🧰 Maintenance

• Update Genome Nexus API clients @leexgh (#4676)

📐 Prototype (Internal Use)

• Add custom url handling for resource tab iframes (enables state persistence for Minerva viewer) @alisman (#4673)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.15...v5.3.16
• Frontend: v5.3.15...v5.3.16

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.15

👷‍♀️ Testing, Configuration & Deployment

• Adjust e2e spec after change in number of genes @alisman (#4671)
• Restore skipped annotation-filter-menu specs @BasLee (#4658)

🧰 Maintenance

• Update API docs @dippindots (#4666)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.14...v5.3.15
• Frontend: v5.3.14...v5.3.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.14

🧬 Features

• Add mutations table and fisher exact two-sided p value to comparison lollipop @gblaih (#4556)

✨ Enhancements

• ✨ Add Time Range Selection to KM Plots on Study View @haynescd (#4645)

🐛 Bug Fixes

• Fix index page with unauthorized studies: only fetch study tags from authorized studies @BasLee (#4653)

👷‍♀️ Testing, Configuration & Deployment

• Option to disable data download but still allow figure download @h164654156465 (#4662)

👷‍♀️ Testing, Configuration & Deployment

• Update seedDB url for localdb test @dippindots (#4665)
• Update screenshots @alisman (#4660)
• Update e2e after data update @alisman (#4659)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.13...v5.3.14
• Frontend: v5.3.13...v5.3.14

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.13

✨ Enhancements

• Improve tooltips for Altered and Unaltered group columns on comparison page #9718 @h164654156465 (#4649)

🐛 Bug Fixes

• Fix duplicate SV intragenic records in Mutations tab @fuzhaoyuan (#4650)
• Fix case list selection for multi study queries @alisman (#4648)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e tests for backend sv_counts_endpoint PR @BasLee (#4647)

🧰 Maintenance

• Update api clients @alisman (#4651)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.12...v5.3.13
• Frontend: v5.3.12...v5.3.13

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.12

✨ Enhancements

• Timeline: links if event popover should open in new window when signaled @alisman (#4643)

🐛 Bug Fixes

• Fix custom sample list selection @alisman (#4644)
• Fix infinite reload of sample lists @alisman (#4641)
• Fix duplicate SV intragenic records @fuzhaoyuan (#4642)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.11...v5.3.12
• Frontend: v5.3.11...v5.3.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning