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Possible errant SV data #11172

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alisman opened this issue Nov 7, 2024 · 0 comments
Open

Possible errant SV data #11172

alisman opened this issue Nov 7, 2024 · 0 comments

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@alisman
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alisman commented Nov 7, 2024

We see here that only a tiny fraction of genie data is profiled for SV. This seems like a data issue? Then there's that one SV alteration on a sample which is NOT profiled for SV. Is this just junk data?

image

https://genie.cbioportal.org/results/oncoprint?cancer_study_list=genie_public&tab_index=tab_visualize&case_set_id=genie_public_all&Action=Submit&gene_list=AAGAB&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=structural_variants&geneset_list=%20

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