DESCRIPTION

Package: ExperimentSubset
Type: Package
Title: Manages subsets of data with Bioconductor Experiment objects
Version: 1.1.0
Date: 2021-05-09
Authors@R: c(person(given="Irzam", family="Sarfraz", email="irzam9095@gmail.com", role=c("aut","cre"),
              comment = c(ORCID = "0000-0001-8121-792X")),
            person(given="Muhammad", family="Asif", email="asif@ntu.edu.pk", role=c("aut","ths"),
              comment = c(ORCID = "0000-0003-1839-2527")),
            person(given=c("Joshua","D."), family="Campbell", email="camp@bu.edu", role=c("aut"),
                   comment = c(ORCID = "0000-0003-0780-8662")))
Description: Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Depends:
  R (>= 4.0.0),
  SummarizedExperiment,
  SingleCellExperiment,
  SpatialExperiment,
  TreeSummarizedExperiment
biocViews: Infrastructure, Software, DataImport, DataRepresentation
Imports:
  methods,
  Matrix,
  S4Vectors
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    testthat,
    covr,
    stats,
    scran,
    scater,
    scds,
    TENxPBMCData,
    airway
VignetteBuilder: knitr
Collate:
    'allClasses.R'
    'allGenerics.R'
    'ExperimentSubset.R'
    'SubsetRangedSummarizedExperiment.R'
    'SubsetSingleCellExperiment.R'
    'SubsetSummarizedExperiment.R'
    'SubsetSpatialExperiment.R'
    'SubsetTreeSummarizedExperiment.R'