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ExperimentSubset

R-CMD-check Codecov test coverage

Introduction

ExperimentSubset package enables users to perform flexible subsetting of Single-Cell data that comes from the same experiment as well as the consequent storage of these subsets back into the same object. It offers the same interface to the users as other Experiment classes but with additional subset support. More details about the package are available in the package vignette.

Supported Experiment Classes

  1. SummarizedExperiment
  2. RangedSummarizedExperiment
  3. SingleCellExperiment
  4. TreeSummarizedExperiment
  5. SpatialExperiment

Installation

To install the latest version of ExperimentSubset from GitHub using devtools:

library(devtools)
install_github("campbio/ExperimentSubset")

Or download the release version from Bioconductor: https://bioconductor.org/packages/release/bioc/html/ExperimentSubset.html

Citation

Irzam Sarfraz, Muhammad Asif, Joshua D Campbell, ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects, Bioinformatics, 2021;, btab179, https://doi.org/10.1093/bioinformatics/btab179