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[Feature]: Add SLEAP #48

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CodyCBakerPhD opened this issue Jul 29, 2022 · 0 comments · Fixed by #160
Closed
2 tasks done

[Feature]: Add SLEAP #48

CodyCBakerPhD opened this issue Jul 29, 2022 · 0 comments · Fixed by #160

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@CodyCBakerPhD
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What would you like to see added to nwb-conversion-tools?

The SLEAP team recently added NWB support.

Would be nice to have a DataInterface here for that.

Similar to the way DLC initially did it, none of the logic writing to an in-memory file was peeled out so we would have to do/request that: https://github.com/talmolab/sleap/blob/develop/sleap/io/format/ndx_pose.py#L262-L339

This issue is primarily just for the pose estimation series output for each session, they are also doing a lot of work representing the training data through a new neurodata type as well: rly/ndx-pose#9

They have testing data available from their repo: https://github.com/talmolab/sleap/tree/develop/tests/data for example usage of it refer to https://github.com/talmolab/sleap/blob/e2ec3b3b9eec243d943f46ced6e61e3c4f69b27a/tests/io/test_formats.py#L365-L399

Is your feature request related to a problem?

No response

What solution would you like?

Goals is to make a SLEAPInterface for interfacing with their data.

Do you have any interest in helping implement the feature?

Yes, but I would need guidance.

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