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Argument list too long #15

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gpcr opened this issue Mar 19, 2019 · 0 comments
Open

Argument list too long #15

gpcr opened this issue Mar 19, 2019 · 0 comments

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@gpcr
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gpcr commented Mar 19, 2019

Is there a limit on the number of infofields to print?

I was trying to print all the dbnsfp annotated info fields: getting below error

Traceback (most recent call last):
  File "/usr/local/bin/vawk", line 274, in <module>
    sys.exit(main())
  File "/usr/local/bin/vawk", line 269, in main
    vawk(args.debug, args.header, args.var, args.info_col, args.cmd, args.vcf)
  File "/usr/local/bin/vawk", line 254, in vawk
    p = Popen(cmd, stdout=PIPE, stderr=STDOUT)
  File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
    errread, errwrite)
  File "/usr/lib64/python2.7/subprocess.py", line 1327, in _execute_child
    raise child_exception
OSError: [Errno 7] Argument list too long

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