diff --git a/.github/workflows/docsite-build-deploy.yml b/.github/workflows/docsite-build-deploy.yml index f00fda20c..5c13f5cb8 100644 --- a/.github/workflows/docsite-build-deploy.yml +++ b/.github/workflows/docsite-build-deploy.yml @@ -36,36 +36,12 @@ jobs: run: | sudo apt-get install -y pandoc - - name: Install misc deps - run: | - sudo apt-get update - sudo apt-get install -y libcairo2-dev rsync - - name: Build Sphinx website run: | cd docs/ make clean && make html cp -r _build/html/* ../docsite/. - - uses: r-lib/actions/setup-r@v2 - with: - extra-repositories: https://tiledb-inc.r-universe.dev - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - working-directory: ./api/r/cellxgene.census - extra-repositories: https://tiledb-inc.r-universe.dev - extra-packages: any::rcmdcheck, any::styler, any::roxygen2, any::pkgdown, any::BiocManager, - needs: check - cache: true - - - name: Build pkgdown website - run: | - cd api/r/cellxgene.census - mv _vignettes vignettes - Rscript -e 'BiocManager::install("scater")' - Rscript -e 'pkgdown::build_site()' - cd ../../../ mkdir -p docsite/r cp -r api/r/cellxgene.census/docs/* docsite/r/. diff --git a/api/r/cellxgene.census/docs/.RData b/api/r/cellxgene.census/docs/.RData new file mode 100644 index 000000000..889f2e6b9 Binary files /dev/null and b/api/r/cellxgene.census/docs/.RData differ diff --git a/api/r/cellxgene.census/docs/404.html b/api/r/cellxgene.census/docs/404.html index 67f32843f..bd2d7e6f6 100644 --- a/api/r/cellxgene.census/docs/404.html +++ b/api/r/cellxgene.census/docs/404.html @@ -14,80 +14,69 @@ - - - - + + + + Skip to contents - -