DESCRIPTION

Package: Banksy
Title: Spatial transcriptomic clustering
Version: 0.1.3
Authors@R: c(
    person(given = "Vipul",
           family = "Singhal",
           role = c("aut")),
    person(given = "Joseph",
           family = "Lee",
           role = c("aut", "cre"),
           email = "joseph.lee@u.nus.edu"))
Description: Banksy is an R package that incorporates spatial information to 
    cluster cells in a feature space (e.g. gene expression). Spatial information
    is incorporated by averaging the features of the k nearest neighbours to 
    generate new 'neighbour' features for a given cell. This is concatenated to
    the cell's own features to generate a combined block matrix which is used
    for constructing a nearest neighbour network and Leiden clustering.
Depends:
     R (>= 3.5.0)
Imports:
    data.table,
    matrixStats,
    reshape2,
    irlba,
    uwot,
    dbscan,
    igraph,
    leidenAlg,
    mclust,
    ComplexHeatmap,
    circlize,
    ggalluvial,
    ggplot2,
    grid,
    gridExtra,
    pals,
    plyr,
    methods,
    RcppHungarian,
    rlang,
    SummarizedExperiment,
    stats,
    utils
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/prabhakarlab/Banksy
RoxygenNote: 7.1.2
Suggests: 
    covr,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    SingleCellExperiment,
    scran,
    scater
VignetteBuilder: knitr
Config/testthat/edition: 3
biocViews:
    Clustering,
    Spatial,
    SingleCell,
    GeneExpression,
    DimensionReduction