- Interoperability with SingleCellExperiment with asBanksyObject
- Passing Bioc and R CMD checks
- BanksyObject: dimensionality reduction slot name changed to reduction
- RunPCA and RunUMAP
- Plotting is generalised (plotReduction instead of plotUMAP / plotPCA)
- ConnectClusters improved and returns BanksyObject
- ARI computation and plotting
- Legacy version