Schema updates to Mpox, Mpox International GRDI and CanCOGeN templates. Minor bug fixes in dates for GRDI and syntax errors for GRDI, AMBR, CanCOGeN and Influenza.
Issues resolved as part of this release PGP #19 (syntax errors), #17 (AGRO duplicate ID) as well as issues #3, #2 and #1 from the CanCOGeN specification.
| Template Name | Template Versionx.y.z | x changes (field) | y changes (values/IDs) | z changes (defs/formats/examples) |
|---|---|---|---|---|
| CanCOGeN (SC2) | 2.5.2 | Add picklist term to 'sample collected by' and 'sequence submitted by' | Fix syntax error | |
| DEXA (One Health) | 1.2.0 | Added STypeMenu, changed export field targets | ||
| GISAID (SC2) | 1.0.2 | |||
| GRDI | 13.4.4 | Update ID for 'pig manure' | Fix date formatting issue | |
| Mpox | 7.5.5 | Add 'depth of coverage', 'depth of coverage threshold' and 'breadth of coverage' back into schema | ||
| MpoxInternational | 8.5.5 | Add 'breadth of coverage', update ID for 'assay target name' to GENEPIO:0102052 | ||
| PHA4GE (SC2) | 1.0.2 | |||
| AMBR | 2.3.2 | Fix syntax error | ||
| PathogenAgnostic | 1.0.1 | |||
| Influenza | 1.0.2 | Fix syntax error | ||
| WWSC2 | 4.1.1 | New fields for 'target taxonomic name'(1,2,3 etc). | ||
| WWAMR | 4.1.1 | New fields for 'target taxonomic name'(1,2,3 etc). | ||
| WWPathogenAgnostic (formerly WWSinglePathogen) | 4.1.1 | New fields for 'target taxonomic name'(1,2,3 etc). | ||
| HPAI | 1.0.0 | |||
| HPAIFood | 1.0.0 | |||
| HPAIWW | 1.0.0 | |||
| HPAIEnviro | 1.0.0 | |||
| HPAIHost | 1.0.0 |