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Problems interpreting results #640

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SSicaaJL opened this issue Oct 11, 2019 · 1 comment
Open

Problems interpreting results #640

SSicaaJL opened this issue Oct 11, 2019 · 1 comment

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@SSicaaJL
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Hello, may I ask what this UAZ ID represent, and where can I find them i.e. the database? Also, how can I interpret this result? Thank you.

Output:
(UAZ ID)

"text" : "carboxymycobactin",
"frame-id" : "ment-complex-UAZ-r1-complex-8-11",
"type" : "protein",
"frame-type" : "entity-mention",
"end-pos" : {
"reference" : "pass-complex-UAZ-r1-complex",
"offset" : 868,
"object-type" : "relative-pos"
},
"xrefs" : [ {
"namespace" : "uaz",
"object-type" : "db-reference",
"id" : "UAZ00002"

@hickst
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hickst commented Oct 16, 2019

Caveat: I haven't worked on Reach in over two years so take this with a grain of salt.

If I remember correctly, the UAZ ID means that the entity in question was not found in any of the preceding Bioresources knowledge bases. All entities need some ID, so a UAZ ID is assigned. If the entity is important to you, you should take the UAZ ID as a signal that you should properly identify the entity in a separate, local override file or use a different Bioresource (one which contains/identifies the entity) in the named entity recognition sequence.( See the CLU Lab Bioresources project https://github.com/clulab/bioresources).

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