From 19b61a06b0473691f873a281d9acffa7ecd16e7b Mon Sep 17 00:00:00 2001 From: nanjiangwill Date: Thu, 19 Sep 2024 15:24:55 -0400 Subject: [PATCH 1/9] support typer --- commit0/__main__.py | 167 +--------- commit0/args.py | 739 ++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 2 +- 3 files changed, 743 insertions(+), 165 deletions(-) create mode 100644 commit0/args.py diff --git a/commit0/__main__.py b/commit0/__main__.py index c58f74e..caaceb9 100644 --- a/commit0/__main__.py +++ b/commit0/__main__.py @@ -1,171 +1,10 @@ -import commit0.harness.run_pytest_ids -import commit0.harness.get_pytest_ids -import commit0.harness.build -import commit0.harness.setup -import commit0.harness.evaluate -import commit0.harness.lint -import commit0.harness.save -import copy -import sys -import os -import hydra -from hydra.core.config_store import ConfigStore -from commit0.configs.config_class import Commit0Config -from commit0.harness.constants import COMMANDS, SPLIT -from omegaconf import OmegaConf +from commit0.args import app as commit0_app def main() -> None: - command = sys.argv[1] - if command not in COMMANDS: - raise ValueError( - f"command must be from {', '.join(COMMANDS)}, but you provided {command}" - ) - # type check config values - cs = ConfigStore.instance() - cs.store(name="user", group="Commit0Config", node=Commit0Config) - # have hydra to ignore all command-line arguments - sys_argv = copy.deepcopy(sys.argv) - cfg_arg = next((arg for arg in sys_argv if arg.startswith("--cfg=")), None) - - hydra.initialize(version_base=None, config_path="configs") - config = hydra.compose(config_name="user") - - if cfg_arg: - sys_argv.remove(cfg_arg) - config_name = cfg_arg.split("=")[1] - user_config = OmegaConf.load(config_name) - config = OmegaConf.merge(config, user_config) - - # after hydra gets all configs, put command-line arguments back - sys.argv = sys_argv - # repo_split: split from command line has a higher priority than split in hydra - if command in [ - "clone", - "build", - "evaluate", - "evaluate-reference", - "save", - ]: - if len(sys.argv) >= 3: - if sys.argv[2] not in SPLIT: - raise ValueError( - f"repo split must be from {', '.join(SPLIT.keys())}, but you provided {sys.argv[2]}" - ) - config.repo_split = sys.argv[2] - config.base_dir = os.path.abspath(config.base_dir) - - if command == "clone": - if len(sys.argv) != 3: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 clone {repo_split}" - ) - commit0.harness.setup.main( - config.dataset_name, - config.dataset_split, - config.repo_split, - config.base_dir, - ) - elif command == "build": - if len(sys.argv) != 3: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 build {repo_split}" - ) - commit0.harness.build.main( - config.dataset_name, - config.dataset_split, - config.repo_split, - config.num_workers, - config.backend, - ) - elif command == "get-tests": - if len(sys.argv) != 3: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 get-tests {repo_name}" - ) - repo = sys.argv[2] - commit0.harness.get_pytest_ids.main(repo, stdout=True) - elif command == "test" or command == "test-reference": - # this command assume execution in arbitrary working directory - repo_or_repo_path = sys.argv[2] - if command == "test-reference": - if len(sys.argv) != 4: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 test-reference {repo_dir} {test_ids}" - ) - branch = "reference" - test_ids = sys.argv[3] - else: - if len(sys.argv) != 5: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 test {repo_dir} {branch} {test_ids}" - ) - branch = sys.argv[3] - test_ids = sys.argv[4] - if branch.startswith("branch="): - branch = branch[len("branch=") :] - commit0.harness.run_pytest_ids.main( - config.dataset_name, - config.dataset_split, - config.base_dir, - repo_or_repo_path, - branch, - test_ids, - config.backend, - config.timeout, - config.num_cpus, - stdout=True, - ) - elif command == "evaluate" or command == "evaluate-reference": - if command == "evaluate-reference": - if len(sys.argv) != 3: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 evaluate-reference {repo_split}" - ) - branch = "reference" - else: - if len(sys.argv) != 4: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 evaluate {repo_split} {branch}" - ) - branch = sys.argv[3] - if branch.startswith("branch="): - branch = branch[len("branch=") :] - commit0.harness.evaluate.main( - config.dataset_name, - config.dataset_split, - config.repo_split, - config.base_dir, - branch, - config.backend, - config.timeout, - config.num_cpus, - config.num_workers, - ) - elif command == "lint": - files = sys.argv[1:] - commit0.harness.lint.main(config.base_dir, files) - elif command == "save": - if len(sys.argv) != 5: - raise ValueError( - "You provided an incorrect number of arguments.\nUsage: commit0 save {repo_split} {owner} {branch}" - ) - owner = sys.argv[3] - branch = sys.argv[4] - if branch.startswith("branch="): - branch = branch[len("branch=") :] - commit0.harness.save.main( - config.dataset_name, - config.dataset_split, - config.repo_split, - config.base_dir, - owner, - branch, - config.github_token, - ) + """Main function to run the CLI""" + commit0_app() if __name__ == "__main__": main() - -__all__ = [] diff --git a/commit0/args.py b/commit0/args.py new file mode 100644 index 0000000..2fc08ff --- /dev/null +++ b/commit0/args.py @@ -0,0 +1,739 @@ +import typer +from pathlib import Path +from typing import List, Dict, Any +import yaml +import commit0.harness.run_pytest_ids +import commit0.harness.get_pytest_ids +import commit0.harness.build +import commit0.harness.setup +import commit0.harness.evaluate +import commit0.harness.lint +import commit0.harness.save +from commit0.harness.constants import SPLIT, SPLIT_ALL + +app = typer.Typer() + + +class Colors: + RESET = "\033[0m" + RED = "\033[91m" + YELLOW = "\033[93m" + CYAN = "\033[96m" + ORANGE = "\033[95m" + + +def highlight(text: str, color: str) -> str: + """Highlight text with a color.""" + return f"{color}{text}{Colors.RESET}" + + +def read_yaml_config(file_path: str) -> Dict[str, Any]: + """Read a YAML configuration file.""" + try: + with open(file_path, "r") as file: + return yaml.safe_load(file) + except FileNotFoundError: + raise typer.BadParameter( + f"Config file not found: {highlight(file_path, Colors.RED)}" + ) + except yaml.YAMLError as e: + raise typer.BadParameter( + f"Invalid YAML in config file: {highlight(str(e), Colors.RED)}" + ) + + +def validate_config( + config: Dict[str, Any], required_keys: List[str], type_map: Dict[str, type] +) -> Dict[str, Any]: + """Validate a configuration.""" + missing_keys = [key for key in required_keys if key not in config] + if missing_keys: + missing_keys_str = ", ".join( + highlight(key, Colors.YELLOW) for key in missing_keys + ) + raise typer.BadParameter(f"Missing required keys in YAML: {missing_keys_str}") + + error_messages = [] + for key, expected_type in type_map.items(): + if key in config: + value = config[key] + if not isinstance(value, expected_type): + error_messages.append( + f" {highlight(key, Colors.RED)}: expected {highlight(expected_type.__name__, Colors.YELLOW)}, got {highlight(type(value).__name__, Colors.RED)}" + ) + + if error_messages: + error_str = "\n".join(error_messages) + raise typer.BadParameter(f"Invalid configuration:\n{error_str}") + + return config + + +def get_validated_config( + config_name: str, required_keys: List[str], type_map: Dict[str, type] +) -> Dict[str, Any]: + """Get a validated configuration from a YAML file.""" + typer.echo() # Add an empty line for better readability + typer.secho("------------------------", fg=typer.colors.BLUE) + typer.secho("Configuration File Mode", fg=typer.colors.BLUE, bold=True) + typer.secho("------------------------", fg=typer.colors.BLUE) + typer.secho( + "Using config file. All command-line arguments will be ignored.", + fg=typer.colors.YELLOW, + ) + typer.secho( + "Values from the YAML file will be used instead.", fg=typer.colors.YELLOW + ) + typer.echo() # Add an empty line for better readability + + yaml_config = read_yaml_config(config_name) + + config = validate_config(yaml_config, required_keys, type_map) + + return config + + +@app.command() +def clone( + repo_split: str = typer.Argument( + None, + help=f"Split of the repository, one of: {", ".join([highlight(key, Colors.ORANGE) for key in SPLIT.keys()])}", + ), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory to clone repos"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Commit0 clone a repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ + if config_name: + required_keys = ["repo_split", "dataset_name", "dataset_split", "base_dir"] + type_map = { + "repo_split": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_split = config["repo_split"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + else: + if repo_split is None: + raise typer.BadParameter( + f"Missing argument '{highlight('REPO_SPLIT', Colors.RED)}'.", + param_hint="REPO_SPLIT", + ) + + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) + + typer.echo(f"Cloning repository for split: {repo_split}") + typer.echo(f"Dataset name: {dataset_name}") + typer.echo(f"Dataset split: {dataset_split}") + typer.echo(f"Base directory: {base_dir}") + + commit0.harness.setup.main( + dataset_name, + dataset_split, + repo_split, + base_dir, + ) + + +@app.command() +def build( + repo_split: str = typer.Argument( + None, help=f"Split of the repository, one of {SPLIT.keys()}" + ), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + num_workers: int = typer.Option(8, help="Number of workers"), + backend: str = typer.Option("local", help="Backend to use for building"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Commit0 build a repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_split", + "dataset_name", + "dataset_split", + "num_workers", + "backend", + ] + type_map = { + "repo_split": str, + "dataset_name": str, + "dataset_split": str, + "num_workers": int, + "backend": str, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_split = config["repo_split"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + num_workers = config["num_workers"] + backend = config["backend"] + else: + if repo_split is None: + raise typer.BadParameter( + f"Missing argument '{highlight('REPO_SPLIT', Colors.RED)}'.", + param_hint="REPO_SPLIT", + ) + + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) + + typer.echo(f"Building repository for split: {repo_split}") + typer.echo(f"Dataset name: {dataset_name}") + typer.echo(f"Dataset split: {dataset_split}") + typer.echo(f"Number of workers: {num_workers}") + typer.echo(f"Backend: {backend}") + + commit0.harness.build.main( + dataset_name, + dataset_split, + repo_split, + num_workers, + backend, + ) + + +@app.command() +def get_tests( + repo_name: str = typer.Argument( + None, + help=f"Name of the repository to get tests for, one of: {', '.join(highlight(key, Colors.ORANGE) for key in SPLIT_ALL)}", + ), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Get tests for a Commit0 repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = ["repo_name"] + type_map = {"repo_name": str} + + config = get_validated_config(config_name, required_keys, type_map) + + repo_name = config["repo_name"] + else: + if repo_name is None: + raise typer.BadParameter( + f"Missing argument '{highlight('REPO_NAME', Colors.RED)}'.", + param_hint="REPO_NAME", + ) + if repo_name not in SPLIT_ALL: + valid_repos = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT_ALL] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_NAME', Colors.RED)}. Must be one of: {valid_repos}", + param_hint="REPO_NAME", + ) + + typer.echo(f"Getting tests for repository: {repo_name}") + + commit0.harness.get_pytest_ids.main(repo_name, stdout=True) + + +@app.command() +def test( + repo_or_repo_path: str = typer.Argument( + None, help="Directory of the repository to test" + ), + branch: str = typer.Argument(None, help="Branch to test"), + test_ids: str = typer.Argument(None, help="Test IDs to run"), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory of repos"), + backend: str = typer.Option("local", help="Backend to use for testing"), + timeout: int = typer.Option(3600, help="Timeout for tests in seconds"), + num_cpus: int = typer.Option(1, help="Number of CPUs to use"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Run tests on a Commit0 repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_or_repo_path", + "branch", + "test_ids", + "dataset_name", + "dataset_split", + "base_dir", + "backend", + "timeout", + "num_cpus", + ] + type_map = { + "repo_or_repo_path": str, + "branch": str, + "test_ids": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + "backend": str, + "timeout": int, + "num_cpus": int, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_or_repo_path = config["repo_or_repo_path"] + branch = config["branch"] + test_ids = config["test_ids"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + backend = config["backend"] + timeout = config["timeout"] + num_cpus = config["num_cpus"] + else: + if repo_or_repo_path is None or branch is None or test_ids is None: + missing_args = [] + if repo_or_repo_path is None: + missing_args.append("REPO_OR_REPO_PATH") + if branch is None: + missing_args.append("BRANCH") + if test_ids is None: + missing_args.append("TEST_IDS") + missing_args_str = ", ".join( + [highlight(arg, Colors.RED) for arg in missing_args] + ) + raise typer.BadParameter( + f"Missing required argument(s): {missing_args_str}" + ) + + typer.echo(f"Running tests for repository: {repo_or_repo_path}") + typer.echo(f"Branch: {branch}") + typer.echo(f"Test IDs: {test_ids}") + + if branch.startswith("branch="): + branch = branch[len("branch=") :] + + commit0.harness.run_pytest_ids.main( + dataset_name, + dataset_split, + base_dir, + repo_or_repo_path, + branch, + test_ids, + backend, + timeout, + num_cpus, + stdout=True, + ) + + +@app.command() +def test_reference( + repo_or_repo_path: str = typer.Argument( + None, help="Directory of the repository to test" + ), + test_ids: str = typer.Argument(None, help="Test IDs to run"), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory of repos"), + backend: str = typer.Option("local", help="Backend to use for testing"), + timeout: int = typer.Option(1800, help="Timeout for tests in seconds"), + num_cpus: int = typer.Option(1, help="Number of CPUs to use"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Run tests on the reference commit of a Commit0 repository + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_or_repo_path", + "test_ids", + "dataset_name", + "dataset_split", + "base_dir", + "backend", + "timeout", + "num_cpus", + ] + type_map = { + "repo_or_repo_path": str, + "test_ids": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + "backend": str, + "timeout": int, + "num_cpus": int, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_or_repo_path = config["repo_or_repo_path"] + test_ids = config["test_ids"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + backend = config["backend"] + timeout = config["timeout"] + num_cpus = config["num_cpus"] + else: + if repo_or_repo_path is None or test_ids is None: + missing_args = [] + if repo_or_repo_path is None: + missing_args.append("REPO_OR_REPO_PATH") + if test_ids is None: + missing_args.append("TEST_IDS") + missing_args_str = ", ".join( + [highlight(arg, Colors.RED) for arg in missing_args] + ) + raise typer.BadParameter( + f"Missing required argument(s): {missing_args_str}" + ) + + typer.echo(f"Running reference tests for repository: {repo_or_repo_path}") + typer.echo(f"Test IDs: {test_ids}") + + commit0.harness.run_pytest_ids.main( + dataset_name, + dataset_split, + base_dir, + repo_or_repo_path, + "reference", + test_ids, + backend, + timeout, + num_cpus, + stdout=True, + ) + + +@app.command() +def evaluate( + repo_split: str = typer.Argument( + None, help=f"Split of the repository, one of {SPLIT.keys()}" + ), + branch: str = typer.Argument(None, help="Branch to evaluate"), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory of repos"), + backend: str = typer.Option("local", help="Backend to use for evaluation"), + timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), + num_cpus: int = typer.Option(1, help="Number of CPUs to use"), + num_workers: int = typer.Option(8, help="Number of workers to use"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Evaluate a Commit0 repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_split", + "branch", + "dataset_name", + "dataset_split", + "base_dir", + "backend", + "timeout", + "num_cpus", + "num_workers", + ] + type_map = { + "repo_split": str, + "branch": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + "backend": str, + "timeout": int, + "num_cpus": int, + "num_workers": int, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_split = config["repo_split"] + branch = config["branch"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + backend = config["backend"] + timeout = config["timeout"] + num_cpus = config["num_cpus"] + num_workers = config["num_workers"] + else: + if repo_split is None or branch is None: # type: ignore + missing_args = [] + if repo_split is None: + missing_args.append("REPO_SPLIT") + if branch is None: + missing_args.append("BRANCH") + missing_args_str = ", ".join( + [highlight(arg, Colors.RED) for arg in missing_args] + ) + raise typer.BadParameter( + f"Missing required argument(s): {missing_args_str}" + ) + + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) + + typer.echo(f"Evaluating repository split: {repo_split}") + typer.echo(f"Branch: {branch}") + + if branch.startswith("branch="): + branch = branch[len("branch=") :] + + commit0.harness.evaluate.main( + dataset_name, + dataset_split, + repo_split, + base_dir, + branch, + backend, + timeout, + num_cpus, + num_workers, + ) + + +@app.command() +def evaluate_reference( + repo_split: str = typer.Argument( + None, help=f"Split of the repository, one of {SPLIT.keys()}" + ), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory of repos"), + backend: str = typer.Option("local", help="Backend to use for evaluation"), + timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), + num_cpus: int = typer.Option(1, help="Number of CPUs to use"), + num_workers: int = typer.Option(8, help="Number of workers to use"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Evaluate the reference commit of a Commit0 repository. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_split", + "dataset_name", + "dataset_split", + "base_dir", + "backend", + "timeout", + "num_cpus", + "num_workers", + ] + type_map = { + "repo_split": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + "backend": str, + "timeout": int, + "num_cpus": int, + "num_workers": int, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_split = config["repo_split"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + backend = config["backend"] + timeout = config["timeout"] + num_cpus = config["num_cpus"] + num_workers = config["num_workers"] + else: + if repo_split is None: + raise typer.BadParameter( + f"Missing required argument: {highlight('REPO_SPLIT', Colors.RED)}" + ) + + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) + + typer.echo(f"Evaluating reference commit for repository split: {repo_split}") + + commit0.harness.evaluate.main( + dataset_name, + dataset_split, + repo_split, + base_dir, + "reference", + backend, + timeout, + num_cpus, + num_workers, + ) + + +@app.command() +def lint( + files: List[str] = typer.Argument( + None, help="Files to lint. If not provided, all files will be linted." + ), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Lint given files if provided, otherwise lint all files in the base directory. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = ["files"] + type_map = {"files": list} + + config = get_validated_config(config_name, required_keys, type_map) + + files = config["files"] + + if files: + for file in files: + if not Path(file).is_file(): + raise FileNotFoundError(f"File not found: {file}") + typer.echo( + f"Linting specific files: {', '.join(highlight(file, Colors.ORANGE) for file in files)}" + ) + else: + typer.echo("Linting all files in the repository") + + commit0.harness.lint.main(files) + + +@app.command() +def save( + repo_split: str = typer.Argument( + None, help=f"Split of the repository, one of {SPLIT.keys()}" + ), + owner: str = typer.Argument(None, help="Owner of the repository"), + branch: str = typer.Argument(None, help="Branch to save"), + dataset_name: str = typer.Option( + "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" + ), + dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), + base_dir: str = typer.Option("repos/", help="Base directory of repos"), + github_token: str = typer.Option(None, help="GitHub token for authentication"), + config_name: str = typer.Option(None, help="Path to the YAML configuration file"), +) -> None: + """Save a Commit0 repository to GitHub. + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + if config_name: + required_keys = [ + "repo_split", + "owner", + "branch", + "dataset_name", + "dataset_split", + "base_dir", + "github_token", + ] + type_map = { + "repo_split": str, + "owner": str, + "branch": str, + "dataset_name": str, + "dataset_split": str, + "base_dir": str, + "github_token": str, + } + + config = get_validated_config(config_name, required_keys, type_map) + + repo_split = config["repo_split"] + owner = config["owner"] + branch = config["branch"] + dataset_name = config["dataset_name"] + dataset_split = config["dataset_split"] + base_dir = config["base_dir"] + github_token = config["github_token"] + else: + if repo_split is None or owner is None or branch is None: + missing_args = [] + if repo_split is None: + missing_args.append("REPO_SPLIT") + if owner is None: + missing_args.append("OWNER") + if branch is None: + missing_args.append("BRANCH") + missing_args_str = ", ".join( + [highlight(arg, Colors.RED) for arg in missing_args] + ) + raise typer.BadParameter( + f"Missing required argument(s): {missing_args_str}" + ) + + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) + + typer.echo(f"Saving repository split: {repo_split}") + typer.echo(f"Owner: {owner}") + typer.echo(f"Branch: {branch}") + + if branch.startswith("branch="): + branch = branch[len("branch=") :] + + commit0.harness.save.main( + dataset_name, + dataset_split, + repo_split, + base_dir, + owner, + branch, + github_token, + ) + + +if __name__ == "__main__": + app() diff --git a/pyproject.toml b/pyproject.toml index 8c7fb6f..e4079d7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,7 +12,7 @@ dependencies = [ "pre-commit>=3.8.0", "hydra-core>=1.3.2", "modal>=0.64.95", - "aider-chat", + "typer>=0.12.0", "datasets>=3.0.0", "docker>=7.1.0", "fastcore>=1.7.8", From d8ca2118cfffb664b57ae4b806aafbb2a0110d1a Mon Sep 17 00:00:00 2001 From: nanjiangwill Date: Thu, 19 Sep 2024 15:32:12 -0400 Subject: [PATCH 2/9] minor fix --- commit0/args.py | 40 ++++++++++++++++++++++++---------------- commit0/harness/lint.py | 2 +- 2 files changed, 25 insertions(+), 17 deletions(-) diff --git a/commit0/args.py b/commit0/args.py index 2fc08ff..1f3e9a9 100644 --- a/commit0/args.py +++ b/commit0/args.py @@ -168,8 +168,9 @@ def build( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Commit0 build a repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_split", @@ -233,8 +234,9 @@ def get_tests( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Get tests for a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = ["repo_name"] type_map = {"repo_name": str} @@ -280,8 +282,9 @@ def test( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Run tests on a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_or_repo_path", @@ -371,8 +374,9 @@ def test_reference( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Run tests on the reference commit of a Commit0 repository - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_or_repo_path", @@ -454,8 +458,9 @@ def evaluate( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Evaluate a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_split", @@ -550,8 +555,9 @@ def evaluate_reference( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Evaluate the reference commit of a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_split", @@ -622,8 +628,9 @@ def lint( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Lint given files if provided, otherwise lint all files in the base directory. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = ["files"] type_map = {"files": list} @@ -661,8 +668,9 @@ def save( config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: """Save a Commit0 repository to GitHub. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file.""" + + If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. + """ if config_name: required_keys = [ "repo_split", diff --git a/commit0/harness/lint.py b/commit0/harness/lint.py index edea70a..7b9ed82 100644 --- a/commit0/harness/lint.py +++ b/commit0/harness/lint.py @@ -27,7 +27,7 @@ - id: pyright""" -def main(base_dir: str, files: list[str]) -> None: +def main(files: list[str]) -> None: config_file = Path(".commit0.pre-commit-config.yaml") if not config_file.is_file(): config_file.write_text(config) From 5269e0cf4cc08ab55c323435445ec63ff87aa48b Mon Sep 17 00:00:00 2001 From: nanjiangwill Date: Thu, 19 Sep 2024 16:34:03 -0400 Subject: [PATCH 3/9] remove yaml load --- commit0/args.py | 550 +++++++----------------------------------------- 1 file changed, 72 insertions(+), 478 deletions(-) diff --git a/commit0/args.py b/commit0/args.py index 1f3e9a9..3296410 100644 --- a/commit0/args.py +++ b/commit0/args.py @@ -1,7 +1,6 @@ import typer from pathlib import Path -from typing import List, Dict, Any -import yaml +from typing import List import commit0.harness.run_pytest_ids import commit0.harness.get_pytest_ids import commit0.harness.build @@ -27,76 +26,10 @@ def highlight(text: str, color: str) -> str: return f"{color}{text}{Colors.RESET}" -def read_yaml_config(file_path: str) -> Dict[str, Any]: - """Read a YAML configuration file.""" - try: - with open(file_path, "r") as file: - return yaml.safe_load(file) - except FileNotFoundError: - raise typer.BadParameter( - f"Config file not found: {highlight(file_path, Colors.RED)}" - ) - except yaml.YAMLError as e: - raise typer.BadParameter( - f"Invalid YAML in config file: {highlight(str(e), Colors.RED)}" - ) - - -def validate_config( - config: Dict[str, Any], required_keys: List[str], type_map: Dict[str, type] -) -> Dict[str, Any]: - """Validate a configuration.""" - missing_keys = [key for key in required_keys if key not in config] - if missing_keys: - missing_keys_str = ", ".join( - highlight(key, Colors.YELLOW) for key in missing_keys - ) - raise typer.BadParameter(f"Missing required keys in YAML: {missing_keys_str}") - - error_messages = [] - for key, expected_type in type_map.items(): - if key in config: - value = config[key] - if not isinstance(value, expected_type): - error_messages.append( - f" {highlight(key, Colors.RED)}: expected {highlight(expected_type.__name__, Colors.YELLOW)}, got {highlight(type(value).__name__, Colors.RED)}" - ) - - if error_messages: - error_str = "\n".join(error_messages) - raise typer.BadParameter(f"Invalid configuration:\n{error_str}") - - return config - - -def get_validated_config( - config_name: str, required_keys: List[str], type_map: Dict[str, type] -) -> Dict[str, Any]: - """Get a validated configuration from a YAML file.""" - typer.echo() # Add an empty line for better readability - typer.secho("------------------------", fg=typer.colors.BLUE) - typer.secho("Configuration File Mode", fg=typer.colors.BLUE, bold=True) - typer.secho("------------------------", fg=typer.colors.BLUE) - typer.secho( - "Using config file. All command-line arguments will be ignored.", - fg=typer.colors.YELLOW, - ) - typer.secho( - "Values from the YAML file will be used instead.", fg=typer.colors.YELLOW - ) - typer.echo() # Add an empty line for better readability - - yaml_config = read_yaml_config(config_name) - - config = validate_config(yaml_config, required_keys, type_map) - - return config - - @app.command() def clone( repo_split: str = typer.Argument( - None, + ..., help=f"Split of the repository, one of: {", ".join([highlight(key, Colors.ORANGE) for key in SPLIT.keys()])}", ), dataset_name: str = typer.Option( @@ -104,42 +37,16 @@ def clone( ), dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), base_dir: str = typer.Option("repos/", help="Base directory to clone repos"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Commit0 clone a repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = ["repo_split", "dataset_name", "dataset_split", "base_dir"] - type_map = { - "repo_split": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_split = config["repo_split"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - else: - if repo_split is None: - raise typer.BadParameter( - f"Missing argument '{highlight('REPO_SPLIT', Colors.RED)}'.", - param_hint="REPO_SPLIT", - ) - - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Commit0 clone a repository.""" + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) typer.echo(f"Cloning repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") @@ -157,7 +64,8 @@ def clone( @app.command() def build( repo_split: str = typer.Argument( - None, help=f"Split of the repository, one of {SPLIT.keys()}" + ..., + help=f"Split of the repository, one of {", ".join(highlight(key, Colors.ORANGE) for key in SPLIT.keys())}", ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" @@ -165,50 +73,16 @@ def build( dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), num_workers: int = typer.Option(8, help="Number of workers"), backend: str = typer.Option("local", help="Backend to use for building"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Commit0 build a repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_split", - "dataset_name", - "dataset_split", - "num_workers", - "backend", - ] - type_map = { - "repo_split": str, - "dataset_name": str, - "dataset_split": str, - "num_workers": int, - "backend": str, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_split = config["repo_split"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - num_workers = config["num_workers"] - backend = config["backend"] - else: - if repo_split is None: - raise typer.BadParameter( - f"Missing argument '{highlight('REPO_SPLIT', Colors.RED)}'.", - param_hint="REPO_SPLIT", - ) - - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Commit0 build a repository.""" + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) typer.echo(f"Building repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") @@ -228,36 +102,17 @@ def build( @app.command() def get_tests( repo_name: str = typer.Argument( - None, + ..., help=f"Name of the repository to get tests for, one of: {', '.join(highlight(key, Colors.ORANGE) for key in SPLIT_ALL)}", ), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Get tests for a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = ["repo_name"] - type_map = {"repo_name": str} - - config = get_validated_config(config_name, required_keys, type_map) - - repo_name = config["repo_name"] - else: - if repo_name is None: - raise typer.BadParameter( - f"Missing argument '{highlight('REPO_NAME', Colors.RED)}'.", - param_hint="REPO_NAME", - ) - if repo_name not in SPLIT_ALL: - valid_repos = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT_ALL] - ) - raise typer.BadParameter( - f"Invalid {highlight('REPO_NAME', Colors.RED)}. Must be one of: {valid_repos}", - param_hint="REPO_NAME", - ) + """Get tests for a Commit0 repository.""" + if repo_name not in SPLIT_ALL: + valid_repos = ", ".join([highlight(key, Colors.ORANGE) for key in SPLIT_ALL]) + raise typer.BadParameter( + f"Invalid {highlight('REPO_NAME', Colors.RED)}. Must be one of: {valid_repos}", + param_hint="REPO_NAME", + ) typer.echo(f"Getting tests for repository: {repo_name}") @@ -267,10 +122,10 @@ def get_tests( @app.command() def test( repo_or_repo_path: str = typer.Argument( - None, help="Directory of the repository to test" + ..., help="Directory of the repository to test" ), - branch: str = typer.Argument(None, help="Branch to test"), - test_ids: str = typer.Argument(None, help="Test IDs to run"), + branch: str = typer.Argument(..., help="Branch to test"), + test_ids: str = typer.Argument(..., help="Test IDs to run"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -279,63 +134,8 @@ def test( backend: str = typer.Option("local", help="Backend to use for testing"), timeout: int = typer.Option(3600, help="Timeout for tests in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Run tests on a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_or_repo_path", - "branch", - "test_ids", - "dataset_name", - "dataset_split", - "base_dir", - "backend", - "timeout", - "num_cpus", - ] - type_map = { - "repo_or_repo_path": str, - "branch": str, - "test_ids": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - "backend": str, - "timeout": int, - "num_cpus": int, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_or_repo_path = config["repo_or_repo_path"] - branch = config["branch"] - test_ids = config["test_ids"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - backend = config["backend"] - timeout = config["timeout"] - num_cpus = config["num_cpus"] - else: - if repo_or_repo_path is None or branch is None or test_ids is None: - missing_args = [] - if repo_or_repo_path is None: - missing_args.append("REPO_OR_REPO_PATH") - if branch is None: - missing_args.append("BRANCH") - if test_ids is None: - missing_args.append("TEST_IDS") - missing_args_str = ", ".join( - [highlight(arg, Colors.RED) for arg in missing_args] - ) - raise typer.BadParameter( - f"Missing required argument(s): {missing_args_str}" - ) - + """Run tests on a Commit0 repository.""" typer.echo(f"Running tests for repository: {repo_or_repo_path}") typer.echo(f"Branch: {branch}") typer.echo(f"Test IDs: {test_ids}") @@ -360,9 +160,9 @@ def test( @app.command() def test_reference( repo_or_repo_path: str = typer.Argument( - None, help="Directory of the repository to test" + ..., help="Directory of the repository to test" ), - test_ids: str = typer.Argument(None, help="Test IDs to run"), + test_ids: str = typer.Argument(..., help="Test IDs to run"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -371,58 +171,8 @@ def test_reference( backend: str = typer.Option("local", help="Backend to use for testing"), timeout: int = typer.Option(1800, help="Timeout for tests in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Run tests on the reference commit of a Commit0 repository - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_or_repo_path", - "test_ids", - "dataset_name", - "dataset_split", - "base_dir", - "backend", - "timeout", - "num_cpus", - ] - type_map = { - "repo_or_repo_path": str, - "test_ids": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - "backend": str, - "timeout": int, - "num_cpus": int, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_or_repo_path = config["repo_or_repo_path"] - test_ids = config["test_ids"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - backend = config["backend"] - timeout = config["timeout"] - num_cpus = config["num_cpus"] - else: - if repo_or_repo_path is None or test_ids is None: - missing_args = [] - if repo_or_repo_path is None: - missing_args.append("REPO_OR_REPO_PATH") - if test_ids is None: - missing_args.append("TEST_IDS") - missing_args_str = ", ".join( - [highlight(arg, Colors.RED) for arg in missing_args] - ) - raise typer.BadParameter( - f"Missing required argument(s): {missing_args_str}" - ) - + """Run tests on the reference commit of a Commit0 repository""" typer.echo(f"Running reference tests for repository: {repo_or_repo_path}") typer.echo(f"Test IDs: {test_ids}") @@ -443,9 +193,9 @@ def test_reference( @app.command() def evaluate( repo_split: str = typer.Argument( - None, help=f"Split of the repository, one of {SPLIT.keys()}" + ..., help=f"Split of the repository, one of {SPLIT.keys()}" ), - branch: str = typer.Argument(None, help="Branch to evaluate"), + branch: str = typer.Argument(..., help="Branch to evaluate"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -455,69 +205,16 @@ def evaluate( timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), num_workers: int = typer.Option(8, help="Number of workers to use"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Evaluate a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_split", - "branch", - "dataset_name", - "dataset_split", - "base_dir", - "backend", - "timeout", - "num_cpus", - "num_workers", - ] - type_map = { - "repo_split": str, - "branch": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - "backend": str, - "timeout": int, - "num_cpus": int, - "num_workers": int, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_split = config["repo_split"] - branch = config["branch"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - backend = config["backend"] - timeout = config["timeout"] - num_cpus = config["num_cpus"] - num_workers = config["num_workers"] - else: - if repo_split is None or branch is None: # type: ignore - missing_args = [] - if repo_split is None: - missing_args.append("REPO_SPLIT") - if branch is None: - missing_args.append("BRANCH") - missing_args_str = ", ".join( - [highlight(arg, Colors.RED) for arg in missing_args] - ) - raise typer.BadParameter( - f"Missing required argument(s): {missing_args_str}" - ) - - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Evaluate a Commit0 repository.""" + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) typer.echo(f"Evaluating repository split: {repo_split}") typer.echo(f"Branch: {branch}") @@ -541,7 +238,7 @@ def evaluate( @app.command() def evaluate_reference( repo_split: str = typer.Argument( - None, help=f"Split of the repository, one of {SPLIT.keys()}" + ..., help=f"Split of the repository, one of {SPLIT.keys()}" ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" @@ -552,58 +249,16 @@ def evaluate_reference( timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), num_workers: int = typer.Option(8, help="Number of workers to use"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Evaluate the reference commit of a Commit0 repository. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_split", - "dataset_name", - "dataset_split", - "base_dir", - "backend", - "timeout", - "num_cpus", - "num_workers", - ] - type_map = { - "repo_split": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - "backend": str, - "timeout": int, - "num_cpus": int, - "num_workers": int, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_split = config["repo_split"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - backend = config["backend"] - timeout = config["timeout"] - num_cpus = config["num_cpus"] - num_workers = config["num_workers"] - else: - if repo_split is None: - raise typer.BadParameter( - f"Missing required argument: {highlight('REPO_SPLIT', Colors.RED)}" - ) - - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Evaluate the reference commit of a Commit0 repository.""" + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) typer.echo(f"Evaluating reference commit for repository split: {repo_split}") @@ -623,22 +278,10 @@ def evaluate_reference( @app.command() def lint( files: List[str] = typer.Argument( - None, help="Files to lint. If not provided, all files will be linted." + ..., help="Files to lint. If not provided, all files will be linted." ), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Lint given files if provided, otherwise lint all files in the base directory. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = ["files"] - type_map = {"files": list} - - config = get_validated_config(config_name, required_keys, type_map) - - files = config["files"] - + """Lint given files if provided, otherwise lint all files in the base directory.""" if files: for file in files: if not Path(file).is_file(): @@ -655,75 +298,26 @@ def lint( @app.command() def save( repo_split: str = typer.Argument( - None, help=f"Split of the repository, one of {SPLIT.keys()}" + ..., help=f"Split of the repository, one of {SPLIT.keys()}" ), - owner: str = typer.Argument(None, help="Owner of the repository"), - branch: str = typer.Argument(None, help="Branch to save"), + owner: str = typer.Argument(..., help="Owner of the repository"), + branch: str = typer.Argument(..., help="Branch to save"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), base_dir: str = typer.Option("repos/", help="Base directory of repos"), github_token: str = typer.Option(None, help="GitHub token for authentication"), - config_name: str = typer.Option(None, help="Path to the YAML configuration file"), ) -> None: - """Save a Commit0 repository to GitHub. - - If --config-name is provided, all other arguments will be ignored and should be specified in the YAML file. - """ - if config_name: - required_keys = [ - "repo_split", - "owner", - "branch", - "dataset_name", - "dataset_split", - "base_dir", - "github_token", - ] - type_map = { - "repo_split": str, - "owner": str, - "branch": str, - "dataset_name": str, - "dataset_split": str, - "base_dir": str, - "github_token": str, - } - - config = get_validated_config(config_name, required_keys, type_map) - - repo_split = config["repo_split"] - owner = config["owner"] - branch = config["branch"] - dataset_name = config["dataset_name"] - dataset_split = config["dataset_split"] - base_dir = config["base_dir"] - github_token = config["github_token"] - else: - if repo_split is None or owner is None or branch is None: - missing_args = [] - if repo_split is None: - missing_args.append("REPO_SPLIT") - if owner is None: - missing_args.append("OWNER") - if branch is None: - missing_args.append("BRANCH") - missing_args_str = ", ".join( - [highlight(arg, Colors.RED) for arg in missing_args] - ) - raise typer.BadParameter( - f"Missing required argument(s): {missing_args_str}" - ) - - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Save a Commit0 repository to GitHub.""" + if repo_split not in SPLIT: + valid_splits = ", ".join( + [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] + ) + raise typer.BadParameter( + f"Invalid repo_split. Must be one of: {valid_splits}", + param_hint="REPO_SPLIT", + ) typer.echo(f"Saving repository split: {repo_split}") typer.echo(f"Owner: {owner}") From c0283cf8de2bc69f01e9c6a6d39557391e30e3f1 Mon Sep 17 00:00:00 2001 From: nanjiangwill Date: Thu, 19 Sep 2024 16:54:37 -0400 Subject: [PATCH 4/9] ad uv --- uv.lock | 1035 +------------------------------------------------------ 1 file changed, 2 insertions(+), 1033 deletions(-) diff --git a/uv.lock b/uv.lock index 4c6b612..4c30bb3 100644 --- a/uv.lock +++ b/uv.lock @@ -7,95 +7,6 @@ resolution-markers = [ "python_full_version >= '3.13'", ] -[[package]] -name = "aider-chat" -version = "0.56.1.dev111+ge6037140" -source = { git = "https://github.com/paul-gauthier/aider.git?rev=main#e6037140be0105ee2575761b69c0e5ec7acf946b" } -dependencies = [ - { name = "aiohappyeyeballs" }, - { name = "aiohttp" }, - { name = "aiosignal" }, - { name = "annotated-types" }, - { name = "anyio" }, - { name = "attrs" }, - { name = "backoff" }, - { name = 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"https://files.pythonhosted.org/packages/d3/8b/1239a3ef43a0d0ebdca623fb6413bc7702c321400c5fdd574f0b7aa0fbb4/zipp-3.20.1.tar.gz", hash = "sha256:c22b14cc4763c5a5b04134207736c107db42e9d3ef2d9779d465f5f1bcba572b", size = 23848 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/07/9e/c96f7a4cd0bf5625bb409b7e61e99b1130dc63a98cb8b24aeabae62d43e8/zipp-3.20.1-py3-none-any.whl", hash = "sha256:9960cd8967c8f85a56f920d5d507274e74f9ff813a0ab8889a5b5be2daf44064", size = 8988 }, +] From f3d2128eb9930eb943c6ce56b443d5335046173f Mon Sep 17 00:00:00 2001 From: Wenting Zhao Date: Fri, 20 Sep 2024 04:00:07 +0000 Subject: [PATCH 6/9] cleanup --- commit0/__main__.py | 2 +- commit0/{args.py => cli.py} | 208 +++++++++++------------------------- commit0/harness/build.py | 6 +- 3 files changed, 63 insertions(+), 153 deletions(-) rename commit0/{args.py => cli.py} (52%) diff --git a/commit0/__main__.py b/commit0/__main__.py index caaceb9..9122a45 100644 --- a/commit0/__main__.py +++ b/commit0/__main__.py @@ -1,4 +1,4 @@ -from commit0.args import app as commit0_app +from commit0.cli import app as commit0_app def main() -> None: diff --git a/commit0/args.py b/commit0/cli.py similarity index 52% rename from commit0/args.py rename to commit0/cli.py index 3296410..5c6b5ef 100644 --- a/commit0/args.py +++ b/commit0/cli.py @@ -1,6 +1,7 @@ import typer from pathlib import Path -from typing import List +from typing import List, Union +from typing_extensions import Annotated import commit0.harness.run_pytest_ids import commit0.harness.get_pytest_ids import commit0.harness.build @@ -10,7 +11,7 @@ import commit0.harness.save from commit0.harness.constants import SPLIT, SPLIT_ALL -app = typer.Typer() +app = typer.Typer(add_completion=False) class Colors: @@ -26,27 +27,33 @@ def highlight(text: str, color: str) -> str: return f"{color}{text}{Colors.RESET}" +def is_valid(one: str, total: Union[str, dict[str, str]]): + if isinstance(total, dict): + total = total.keys() + if one not in total: + valid = ", ".join( + [highlight(key, Colors.ORANGE) for key in total] + ) + raise typer.BadParameter( + f"Invalid {highlight('REPO_OR_REPO_SPLIT', Colors.RED)}. Must be one of: {valid}", + param_hint="REPO or REPO_SPLIT", + ) + + @app.command() -def clone( +def setup( repo_split: str = typer.Argument( ..., - help=f"Split of the repository, one of: {", ".join([highlight(key, Colors.ORANGE) for key in SPLIT.keys()])}", + help=f"Split of repositories, one of: {', '.join([highlight(key, Colors.ORANGE) for key in SPLIT.keys()])}", ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), - base_dir: str = typer.Option("repos/", help="Base directory to clone repos"), + base_dir: str = typer.Option("repos/", help="Base directory to clone repos to"), ) -> None: - """Commit0 clone a repository.""" - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + """Commit0 clone a repo split.""" + is_valid(repo_split, SPLIT) typer.echo(f"Cloning repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") @@ -65,37 +72,27 @@ def clone( def build( repo_split: str = typer.Argument( ..., - help=f"Split of the repository, one of {", ".join(highlight(key, Colors.ORANGE) for key in SPLIT.keys())}", + help=f"Split of repositories, one of {', '.join(highlight(key, Colors.ORANGE) for key in SPLIT.keys())}", ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), num_workers: int = typer.Option(8, help="Number of workers"), - backend: str = typer.Option("local", help="Backend to use for building"), ) -> None: """Commit0 build a repository.""" - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid {highlight('REPO_SPLIT', Colors.RED)}. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + is_valid(repo_split, SPLIT) typer.echo(f"Building repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") typer.echo(f"Dataset split: {dataset_split}") typer.echo(f"Number of workers: {num_workers}") - typer.echo(f"Backend: {backend}") commit0.harness.build.main( dataset_name, dataset_split, repo_split, num_workers, - backend, ) @@ -107,12 +104,7 @@ def get_tests( ), ) -> None: """Get tests for a Commit0 repository.""" - if repo_name not in SPLIT_ALL: - valid_repos = ", ".join([highlight(key, Colors.ORANGE) for key in SPLIT_ALL]) - raise typer.BadParameter( - f"Invalid {highlight('REPO_NAME', Colors.RED)}. Must be one of: {valid_repos}", - param_hint="REPO_NAME", - ) + is_valid(repo_name, SPLIT_ALL) typer.echo(f"Getting tests for repository: {repo_name}") @@ -124,64 +116,41 @@ def test( repo_or_repo_path: str = typer.Argument( ..., help="Directory of the repository to test" ), - branch: str = typer.Argument(..., help="Branch to test"), - test_ids: str = typer.Argument(..., help="Test IDs to run"), + test_ids: str = typer.Argument(..., help="All ways pytest supports to run and select tests. Please provide a single string. Example: \"test_mod.py\", \"testing/\", \"test_mod.py::test_func\", \"-k 'MyClass and not method'\""), + branch: Union[str, None] = typer.Option(None, help="Branch to test (branch MUST be provided or use --reference)"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), base_dir: str = typer.Option("repos/", help="Base directory of repos"), backend: str = typer.Option("local", help="Backend to use for testing"), - timeout: int = typer.Option(3600, help="Timeout for tests in seconds"), + timeout: int = typer.Option(1800, help="Timeout for tests in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), + reference: Annotated[bool, typer.Option("--reference", help="Test the reference commit.")] = False ) -> None: """Run tests on a Commit0 repository.""" typer.echo(f"Running tests for repository: {repo_or_repo_path}") typer.echo(f"Branch: {branch}") typer.echo(f"Test IDs: {test_ids}") - if branch.startswith("branch="): - branch = branch[len("branch=") :] - - commit0.harness.run_pytest_ids.main( - dataset_name, - dataset_split, - base_dir, - repo_or_repo_path, - branch, - test_ids, - backend, - timeout, - num_cpus, - stdout=True, - ) - + if repo_or_repo_path.endswith('/'): + repo_or_repo_path = repo_or_repo_path[:-1] + is_valid(repo_or_repo_path.split('/')[-1], SPLIT_ALL) + if reference: + branch = "reference" -@app.command() -def test_reference( - repo_or_repo_path: str = typer.Argument( - ..., help="Directory of the repository to test" - ), - test_ids: str = typer.Argument(..., help="Test IDs to run"), - dataset_name: str = typer.Option( - "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" - ), - dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), - base_dir: str = typer.Option("repos/", help="Base directory of repos"), - backend: str = typer.Option("local", help="Backend to use for testing"), - timeout: int = typer.Option(1800, help="Timeout for tests in seconds"), - num_cpus: int = typer.Option(1, help="Number of CPUs to use"), -) -> None: - """Run tests on the reference commit of a Commit0 repository""" - typer.echo(f"Running reference tests for repository: {repo_or_repo_path}") - typer.echo(f"Test IDs: {test_ids}") + if not branch and not reference: + raise typer.BadParameter( + f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name.", + param_hint="BRANCH", + ) commit0.harness.run_pytest_ids.main( dataset_name, dataset_split, base_dir, repo_or_repo_path, - "reference", + branch, test_ids, backend, timeout, @@ -193,9 +162,9 @@ def test_reference( @app.command() def evaluate( repo_split: str = typer.Argument( - ..., help=f"Split of the repository, one of {SPLIT.keys()}" + ..., help=f"Split of repositories, one of {SPLIT.keys()}" ), - branch: str = typer.Argument(..., help="Branch to evaluate"), + branch: Union[str, None] = typer.Option(None, help="Branch to evaluate (branch MUST be provided or use --reference)"), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -205,23 +174,23 @@ def evaluate( timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), num_workers: int = typer.Option(8, help="Number of workers to use"), + reference: Annotated[bool, typer.Option("--reference", help="Evaluate the reference commit.")] = False ) -> None: """Evaluate a Commit0 repository.""" - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) + is_valid(repo_split, SPLIT) + + if reference: + branch = "reference" + + if not branch and not reference: raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name", + param_hint="BRANCH", + ) typer.echo(f"Evaluating repository split: {repo_split}") typer.echo(f"Branch: {branch}") - if branch.startswith("branch="): - branch = branch[len("branch=") :] - commit0.harness.evaluate.main( dataset_name, dataset_split, @@ -235,63 +204,20 @@ def evaluate( ) -@app.command() -def evaluate_reference( - repo_split: str = typer.Argument( - ..., help=f"Split of the repository, one of {SPLIT.keys()}" - ), - dataset_name: str = typer.Option( - "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" - ), - dataset_split: str = typer.Option("test", help="Split of the Huggingface dataset"), - base_dir: str = typer.Option("repos/", help="Base directory of repos"), - backend: str = typer.Option("local", help="Backend to use for evaluation"), - timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), - num_cpus: int = typer.Option(1, help="Number of CPUs to use"), - num_workers: int = typer.Option(8, help="Number of workers to use"), -) -> None: - """Evaluate the reference commit of a Commit0 repository.""" - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) - - typer.echo(f"Evaluating reference commit for repository split: {repo_split}") - - commit0.harness.evaluate.main( - dataset_name, - dataset_split, - repo_split, - base_dir, - "reference", - backend, - timeout, - num_cpus, - num_workers, - ) - - @app.command() def lint( - files: List[str] = typer.Argument( + files: List[Path] = typer.Argument( ..., help="Files to lint. If not provided, all files will be linted." ), ) -> None: """Lint given files if provided, otherwise lint all files in the base directory.""" - if files: - for file in files: - if not Path(file).is_file(): - raise FileNotFoundError(f"File not found: {file}") - typer.echo( - f"Linting specific files: {', '.join(highlight(file, Colors.ORANGE) for file in files)}" - ) - else: - typer.echo("Linting all files in the repository") - + assert len(files) > 0, "No files to lint." + for path in files: + if not path.is_file(): + raise FileNotFoundError(f"File not found: {path}") + typer.echo( + f"Linting specific files: {', '.join(highlight(file, Colors.ORANGE) for file in files)}" + ) commit0.harness.lint.main(files) @@ -310,22 +236,12 @@ def save( github_token: str = typer.Option(None, help="GitHub token for authentication"), ) -> None: """Save a Commit0 repository to GitHub.""" - if repo_split not in SPLIT: - valid_splits = ", ".join( - [highlight(key, Colors.ORANGE) for key in SPLIT.keys()] - ) - raise typer.BadParameter( - f"Invalid repo_split. Must be one of: {valid_splits}", - param_hint="REPO_SPLIT", - ) + is_valid(repo_split, SPLIT) typer.echo(f"Saving repository split: {repo_split}") typer.echo(f"Owner: {owner}") typer.echo(f"Branch: {branch}") - if branch.startswith("branch="): - branch = branch[len("branch=") :] - commit0.harness.save.main( dataset_name, dataset_split, @@ -335,7 +251,3 @@ def save( branch, github_token, ) - - -if __name__ == "__main__": - app() diff --git a/commit0/harness/build.py b/commit0/harness/build.py index 37c4d1f..addcc7d 100644 --- a/commit0/harness/build.py +++ b/commit0/harness/build.py @@ -19,7 +19,6 @@ def main( dataset_split: str, repo_split: str, num_workers: int, - backend: str, ) -> None: dataset: Iterator[RepoInstance] = load_dataset(dataset_name, split=dataset_split) # type: ignore specs = [] @@ -30,9 +29,8 @@ def main( spec = make_spec(example) specs.append(spec) - if backend == "local": - client = docker.from_env() - build_repo_images(client, specs, num_workers) + client = docker.from_env() + build_repo_images(client, specs, num_workers) __all__ = [] From 9e0095f501da9c67f820443f78d90f4b3e3c9661 Mon Sep 17 00:00:00 2001 From: Wenting Zhao Date: Fri, 20 Sep 2024 04:00:47 +0000 Subject: [PATCH 7/9] updated ci --- .github/workflows/system.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/system.yml b/.github/workflows/system.yml index fc1d212..ef1749b 100644 --- a/.github/workflows/system.yml +++ b/.github/workflows/system.yml @@ -25,9 +25,9 @@ jobs: - name: Get tests run: uv run commit0 get-tests simpy - name: Test - run: uv run commit0 test-reference simpy tests/test_event.py::test_succeed + run: uv run commit0 test simpy tests/test_event.py::test_succeed --reference - name: Evaluate - run: uv run commit0 evaluate-reference simpy + run: uv run commit0 evaluate simpy --reference - name: Lint run: uv run commit0 lint commit0/harness/lint.py - name: Save From 5e88e951292077f9f1a30f2c1c8a02a16b4e63e8 Mon Sep 17 00:00:00 2001 From: Wenting Zhao Date: Fri, 20 Sep 2024 04:13:28 +0000 Subject: [PATCH 8/9] pre-commit --- commit0/cli.py | 80 +++++++++++++++++++++++------------------ commit0/harness/lint.py | 3 +- 2 files changed, 48 insertions(+), 35 deletions(-) diff --git a/commit0/cli.py b/commit0/cli.py index 5c6b5ef..688bb4d 100644 --- a/commit0/cli.py +++ b/commit0/cli.py @@ -27,13 +27,11 @@ def highlight(text: str, color: str) -> str: return f"{color}{text}{Colors.RESET}" -def is_valid(one: str, total: Union[str, dict[str, str]]): +def check_valid(one: str, total: Union[list[str], dict[str, list[str]]]) -> None: if isinstance(total, dict): - total = total.keys() + total = list(total.keys()) if one not in total: - valid = ", ".join( - [highlight(key, Colors.ORANGE) for key in total] - ) + valid = ", ".join([highlight(key, Colors.ORANGE) for key in total]) raise typer.BadParameter( f"Invalid {highlight('REPO_OR_REPO_SPLIT', Colors.RED)}. Must be one of: {valid}", param_hint="REPO or REPO_SPLIT", @@ -53,7 +51,7 @@ def setup( base_dir: str = typer.Option("repos/", help="Base directory to clone repos to"), ) -> None: """Commit0 clone a repo split.""" - is_valid(repo_split, SPLIT) + check_valid(repo_split, SPLIT) typer.echo(f"Cloning repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") @@ -81,7 +79,7 @@ def build( num_workers: int = typer.Option(8, help="Number of workers"), ) -> None: """Commit0 build a repository.""" - is_valid(repo_split, SPLIT) + check_valid(repo_split, SPLIT) typer.echo(f"Building repository for split: {repo_split}") typer.echo(f"Dataset name: {dataset_name}") @@ -104,7 +102,7 @@ def get_tests( ), ) -> None: """Get tests for a Commit0 repository.""" - is_valid(repo_name, SPLIT_ALL) + check_valid(repo_name, SPLIT_ALL) typer.echo(f"Getting tests for repository: {repo_name}") @@ -116,8 +114,13 @@ def test( repo_or_repo_path: str = typer.Argument( ..., help="Directory of the repository to test" ), - test_ids: str = typer.Argument(..., help="All ways pytest supports to run and select tests. Please provide a single string. Example: \"test_mod.py\", \"testing/\", \"test_mod.py::test_func\", \"-k 'MyClass and not method'\""), - branch: Union[str, None] = typer.Option(None, help="Branch to test (branch MUST be provided or use --reference)"), + test_ids: str = typer.Argument( + ..., + help='All ways pytest supports to run and select tests. Please provide a single string. Example: "test_mod.py", "testing/", "test_mod.py::test_func", "-k \'MyClass and not method\'"', + ), + branch: Union[str, None] = typer.Option( + None, help="Branch to test (branch MUST be provided or use --reference)" + ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -126,24 +129,26 @@ def test( backend: str = typer.Option("local", help="Backend to use for testing"), timeout: int = typer.Option(1800, help="Timeout for tests in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), - reference: Annotated[bool, typer.Option("--reference", help="Test the reference commit.")] = False + reference: Annotated[ + bool, typer.Option("--reference", help="Test the reference commit.") + ] = False, ) -> None: """Run tests on a Commit0 repository.""" - typer.echo(f"Running tests for repository: {repo_or_repo_path}") - typer.echo(f"Branch: {branch}") - typer.echo(f"Test IDs: {test_ids}") - - if repo_or_repo_path.endswith('/'): + if repo_or_repo_path.endswith("/"): repo_or_repo_path = repo_or_repo_path[:-1] - is_valid(repo_or_repo_path.split('/')[-1], SPLIT_ALL) + check_valid(repo_or_repo_path.split("/")[-1], SPLIT_ALL) + if not branch and not reference: + raise typer.BadParameter( + f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name.", + param_hint="BRANCH", + ) if reference: branch = "reference" + assert branch is not None, "branch is not specified" - if not branch and not reference: - raise typer.BadParameter( - f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name.", - param_hint="BRANCH", - ) + typer.echo(f"Running tests for repository: {repo_or_repo_path}") + typer.echo(f"Branch: {branch}") + typer.echo(f"Test IDs: {test_ids}") commit0.harness.run_pytest_ids.main( dataset_name, @@ -164,7 +169,9 @@ def evaluate( repo_split: str = typer.Argument( ..., help=f"Split of repositories, one of {SPLIT.keys()}" ), - branch: Union[str, None] = typer.Option(None, help="Branch to evaluate (branch MUST be provided or use --reference)"), + branch: Union[str, None] = typer.Option( + None, help="Branch to evaluate (branch MUST be provided or use --reference)" + ), dataset_name: str = typer.Option( "wentingzhao/commit0_docstring", help="Name of the Huggingface dataset" ), @@ -174,19 +181,21 @@ def evaluate( timeout: int = typer.Option(1800, help="Timeout for evaluation in seconds"), num_cpus: int = typer.Option(1, help="Number of CPUs to use"), num_workers: int = typer.Option(8, help="Number of workers to use"), - reference: Annotated[bool, typer.Option("--reference", help="Evaluate the reference commit.")] = False + reference: Annotated[ + bool, typer.Option("--reference", help="Evaluate the reference commit.") + ] = False, ) -> None: """Evaluate a Commit0 repository.""" - is_valid(repo_split, SPLIT) - + if not branch and not reference: + raise typer.BadParameter( + f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name", + param_hint="BRANCH", + ) if reference: branch = "reference" + assert branch is not None, "branch is not specified" - if not branch and not reference: - raise typer.BadParameter( - f"Invalid {highlight('BRANCH', Colors.RED)}. Either --reference or provide a branch name", - param_hint="BRANCH", - ) + check_valid(repo_split, SPLIT) typer.echo(f"Evaluating repository split: {repo_split}") typer.echo(f"Branch: {branch}") @@ -214,9 +223,9 @@ def lint( assert len(files) > 0, "No files to lint." for path in files: if not path.is_file(): - raise FileNotFoundError(f"File not found: {path}") + raise FileNotFoundError(f"File not found: {str(path)}") typer.echo( - f"Linting specific files: {', '.join(highlight(file, Colors.ORANGE) for file in files)}" + f"Linting specific files: {', '.join(highlight(str(file), Colors.ORANGE) for file in files)}" ) commit0.harness.lint.main(files) @@ -236,7 +245,7 @@ def save( github_token: str = typer.Option(None, help="GitHub token for authentication"), ) -> None: """Save a Commit0 repository to GitHub.""" - is_valid(repo_split, SPLIT) + check_valid(repo_split, SPLIT) typer.echo(f"Saving repository split: {repo_split}") typer.echo(f"Owner: {owner}") @@ -251,3 +260,6 @@ def save( branch, github_token, ) + + +__all__ = [] diff --git a/commit0/harness/lint.py b/commit0/harness/lint.py index 7b9ed82..ff2bd34 100644 --- a/commit0/harness/lint.py +++ b/commit0/harness/lint.py @@ -1,6 +1,7 @@ import subprocess import sys from pathlib import Path +from typing import List config = """repos: @@ -27,7 +28,7 @@ - id: pyright""" -def main(files: list[str]) -> None: +def main(files: List[Path]) -> None: config_file = Path(".commit0.pre-commit-config.yaml") if not config_file.is_file(): config_file.write_text(config) From 929cc90324b2525b836809ac26fb3424f978b128 Mon Sep 17 00:00:00 2001 From: Wenting Zhao Date: Fri, 20 Sep 2024 04:15:14 +0000 Subject: [PATCH 9/9] fixed ci --- .github/workflows/system.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/system.yml b/.github/workflows/system.yml index ef1749b..0a78ee7 100644 --- a/.github/workflows/system.yml +++ b/.github/workflows/system.yml @@ -19,7 +19,7 @@ jobs: - name: Install the project run: uv sync - name: Set up commit0 - run: uv run commit0 clone simpy + run: uv run commit0 setup simpy - name: Build docker images run: uv run commit0 build simpy - name: Get tests