You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I given the below command, after running for 72 hours It didn't generated any SAM file ?
Is their any problem with the cmd which i given ?
Thanks for your comments
Server - 1 TB RAM (128 threads) CMD
./gmapper-ls -L /data/Likith/LikithReddy/hg38.fa -V _N 50 /data/Likith/LikithReddy/SRR098401testsickle_1.fasta /data/Likith/LikithReddy/SRR098401testsickle_2.fasta -E SRR098401.sam
Hi, I given the below command, after running for 72 hours It didn't generated any SAM file ?
Is their any problem with the cmd which i given ?
Thanks for your comments
Server - 1 TB RAM (128 threads)
CMD
./gmapper-ls -L /data/Likith/LikithReddy/hg38.fa -V _N 50 /data/Likith/LikithReddy/SRR098401testsickle_1.fasta /data/Likith/LikithReddy/SRR098401testsickle_2.fasta -E SRR098401.sam
Output:
Statistics:
Overall:
Load Genome Time: 10149.34 seconds
Read Mapping Time: 162941.05 seconds
Reads per hour: 4,088,342
Reads per core-hour: 81,766
The text was updated successfully, but these errors were encountered: