Dockerfile.camp

FROM fedora:33

RUN dnf -y update \
    && dnf -y install \
        gcc-gfortran \
        gcc-c++ \
        make \
        netcdf-fortran-devel \
        metis-devel \
        sundials-devel \
        lapack-devel \
        openblas-devel \
        gsl-devel \
        cmake \
    && dnf clean all

# Build the SuiteSparse libraries for sparse matrix support
# (-k included because of problem with SuiteSparse security certificate - 1 Aug 2021)
RUN curl -kLO http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.1.0.tar.gz \
    && tar -zxvf SuiteSparse-5.1.0.tar.gz \
    && export CXX=/usr/bin/cc \
    && cd SuiteSparse \
    && make install INSTALL=/usr/local BLAS="-L/lib64 -lopenblas"

# Install json-fortran
RUN curl -LO https://github.com/jacobwilliams/json-fortran/archive/6.1.0.tar.gz \
    && tar -zxvf 6.1.0.tar.gz \
    && cd json-fortran-6.1.0 \
    && export FC=gfortran \
    && mkdir build \
    && cd build \
    && cmake -D SKIP_DOC_GEN:BOOL=TRUE .. \
    && make install \
    && cd ~

RUN curl -LO https://github.com/open-atmos/camp/archive/refs/tags/v1.0.0-gamma.tar.gz \
    && tar -zxvf v1.0.0-gamma.tar.gz

# Install a modified version of CVODE
RUN cd camp-1.0.0-gamma \
    && tar -zxvf cvode-3.4-alpha.tar.gz \
    && cd cvode-3.4-alpha \
    && mkdir build \
    && cd build \
    && cmake -D CMAKE_BUILD_TYPE=release \
             -D KLU_ENABLE:BOOL=TRUE \
             -D KLU_LIBRARY_DIR=/usr/local/lib \
             -D KLU_INCLUDE_DIR=/usr/local/include \
             .. \
    && make install \
    && cd ~

ENV LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/lib:/usr/local/lib64:/usr/local/jsonfortran-gnu-6.1.0/lib"
ENV PATH="${PATH}:/usr/local/jsonfortran-gnu-6.1.0/lib"

# Build CAMP
RUN  cd camp-1.0.0-gamma \
    && mkdir build \
    && cd build \
    && export JSON_FORTRAN_HOME="/usr/local/jsonfortran-gnu-6.1.0" \
    && cmake -D CMAKE_BUILD_TYPE=release \
             -D CMAKE_C_FLAGS_DEBUG="-pg" \
             -D CMAKE_Fortran_FLAGS_DEBUG="-pg" \
             -D CMAKE_MODULE_LINKER_FLAGS="-pg" \
             -D ENABLE_GSL:BOOL=TRUE \
             .. \
    && make \
    && cd ~

# NOTE: Modify .dockerignore to whitelist files/directories to copy.
COPY . /partmc/

RUN mkdir /build \
    && cd /build \
    && export CAMP_HOME="/camp-1.0.0-gamma/build/" \
    && cmake -D CMAKE_BUILD_TYPE=release \
             -D CMAKE_C_FLAGS_DEBUG="-g" \
             -D CMAKE_Fortran_FLAGS_DEBUG="-g" \
             -D CMAKE_C_FLAGS_RELEASE="-O2 -g -Werror -Wall -Wextra" \
             -D CMAKE_Fortran_FLAGS_RELEASE="-O2 -g -Werror -fimplicit-none -Wall -Wextra -Wconversion -Wunderflow -Wimplicit-interface -Wno-compare-reals -Wno-unused -Wno-unused-parameter -Wno-unused-dummy-argument -fbounds-check" \
             -D ENABLE_GSL:BOOL=TRUE \
             -D ENABLE_CAMP:BOOL=TRUE \
             /partmc \
    && make