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Commits on Nov 2, 2024

• Merge pull request #184 from compomics/feature/gzip

  RalfG

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  ceda12e
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Commits on Oct 29, 2024

• require ms2rescore-rs version with file type check

  paretje

  committed
  e97d5f6
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• move file type check to ms2rescore_rs

  paretje

  committed
  2676220
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Commits on Oct 1, 2024

• Merge pull request #197 from compomics/fix/deeplc-pin

  RalfG

  authored
  71d42c3
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• Pin DeepLC version to <3.1, avoiding calibration bug

  RalfG

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  0873dd4
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Commits on Sep 27, 2024

• Merge pull request #195 from compomics/IM2Deep-utf8-patch

  ArthurDeclercq

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  4df5740
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• Update im2deep utf8 error

  ArthurDeclercq

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  bef90dd
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Commits on Sep 19, 2024

• Merge pull request #191 from compomics/fix-configuration-docs

  RalfG

  authored
  50002a9
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• Merge pull request #186 from compomics/feature/direct-flashlfq-output

  RalfG

  authored
  3950020
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• Merge branch 'main' of https://github.com/compomics/ms2rescore into feature/direct-flashlfq-output

  RalfG

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  b5f3d78
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Commits on Sep 18, 2024

• Fix incorrect decoy pattern configuration in docs

  rodvrees

  committed
  2af7c66
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Commits on Sep 17, 2024

• Merge pull request #189 from compomics/versions

  RalfG

  authored
  b1e23f3
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• Bump version

  RalfG

  committed
  9052fea
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• Update dependency versions; drop support for Python 3.8 (newer TensorFlow versions)

  RalfG

  committed
  14170a1
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• Merge pull request #188 from compomics/fix/deeplc-logging-encoding

  RalfG

  authored
  0095fa8
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• Fix encoding error in DeepLC logging

  RalfG

  authored
  c3daf98
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Commits on Sep 16, 2024

• Merge pull request #187 from compomics/docs-Fix-readme-URLs

  RalfG

  authored
  709366a
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• Update README.md

  RalfG

  authored
  78cc3b7
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Commits on Sep 5, 2024

• Final tweaks for flashlfq move: update msgfplus example; remove run "na" setting for mokapot flashlfq

  RalfG

  committed
  2fc9552
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• Update default tims config

  RalfG

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  205a9ee
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• GUI: Move write_flashlfq option

  RalfG

  committed
  556b6d4
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• Merge branch 'main' of https://github.com/compomics/ms2rescore into feature/direct-flashlfq-output

  RalfG

  committed
  8f4603c
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• Merge pull request #175 from compomics/feature/gui-streamlining

  RalfG

  authored
  c43a1be
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• Switch to psm_utils flashlfq writing instead of Mokapot function. This removes the ms2rescore>mokapot>write_flashlfq option and adds the ms2rescore>write_flashlfq option.

  RalfG

  committed
  ba62086
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Commits on Aug 21, 2024

• Merge pull request #182 from compomics/fix/catch-pep-qvality-indexerror

  RalfG

  authored
  e66bc86
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• Catch IndexError in Qvality when PEP cannot be calculated (see statisticalbiotechnology/triqler#29, fixes #165)

  RalfG

  committed
  03a7c24
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Commits on Aug 20, 2024

• Merge pull request #176 from compomics/fix/timsrescore-defaults-priority

  RalfG

  authored
  37fa41a
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Commits on Aug 19, 2024

• Merge pull request #181 from compomics/fix/docs

  RalfG

  authored
  c6c77af
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• Merge pull request #180 from compomics/fix/ruff-formatting-ipynb

  RalfG

  authored
  840f0c5
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• Minor doc updates: Update overview figure; refer to ms2rescore.rescore in Python API tutorial; remove v3.0 warning in readme

  RalfG

  committed
  f3c310e
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• Fix ruff checks for tutorial notebook

  RalfG

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  5a83d9b
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Commits on Aug 14, 2024

• Improve clarity of output_path_prefix docstring

  RalfG

  committed
  68d061e
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• Fix bug where, if tims2rescore enabled, the default config always overwrote user config

  RalfG

  committed
  f254a21
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• Remove unused theme

  RalfG

  committed
  a016ce3
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• GUI: Improve user-friendliness:

  RalfG

  committed
  5062572
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