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EDC cross-linker is not supported yet. #2

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esiefker opened this issue Mar 16, 2022 · 0 comments
Open

EDC cross-linker is not supported yet. #2

esiefker opened this issue Mar 16, 2022 · 0 comments

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@esiefker
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esiefker commented Mar 16, 2022

Documentation says EDC is supported. Running the program says otherwise.

$ java -jar xilmass-1.0.jar  -c
10:41:30,781  INFO Start:1468 - Successfully sent analytics event.

[Xilmass - an algorithm to identify cross-linked peptides]


10:41:30,831  INFO Start:116 - Xilmass version:1.0 starts!
10:41:30,861  INFO Start:1423 - There are currently 4 mass windows!
10:41:30,866 ERROR Start:322 - java.lang.UnsupportedOperationException: EDC cross-linker is not supported yet.
10:41:30,866  INFO Start:335 - The settings are ready to perform the search!
10:41:30,866  INFO Start:338 - Checking if a previously constructed CX database exists for the same search settings!
10:41:30,866  INFO Start:369 - Either a CX database is not found or the settings are different! A CX database is going to be constructed..
10:41:30,871 ERROR Start:768 - EDC cross-linker is not supported yet.
java.lang.UnsupportedOperationException: EDC cross-linker is not supported yet.
        at crossLinker.type.EDC.<init>(EDC.java:26)
        at crossLinker.GetCrossLinker.getCrossLinker(GetCrossLinker.java:23)
        at database.CreateDatabase.<init>(CreateDatabase.java:101)
        at start.Start.launchCommandLineMode(Start.java:370)
        at start.Start.parse(Start.java:766)
        at start.Start.main(Start.java:103)
usage: java -jar <jar file name> [-c | -r | -s] [-h]   [-u]
Help
     -c,--command_line   Command-line mode
     -h,--help           Help
     -r,--results_gui    Results GUI mode
     -s,--startup_gui    Startup GUI mode
     -u,--usage          Usage
End of Help
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