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Merge remote-tracking branch 'upstream' into devel #162

Merge remote-tracking branch 'upstream' into devel

Merge remote-tracking branch 'upstream' into devel #162

Triggered via push June 27, 2024 14:00
Status Failure
Total duration 36m 25s
Artifacts 3

check-bioc.yml

on: push
Matrix: build-check
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8 errors and 49 warnings
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
Test failures
macOS-latest (devel)
R CMD check found ERRORs
macOS-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
No such keg: /opt/homebrew/Cellar/r
windows-latest (devel)
Test failures
windows-latest (devel)
R CMD check found ERRORs
windows-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
harfbuzz 8.5.0 is already installed and up-to-date. To reinstall 8.5.0, run: brew reinstall harfbuzz
macOS-latest (devel)
macOS's Gatekeeper has been disabled for this Cask
macOS-latest (devel)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (devel)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
windows-latest (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:

Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-devel-results Expired
14.8 MB
Windows-biocversion-devel-r-devel-results Expired
11.3 MB
macOS-biocversion-devel-r-devel-results Expired
15.8 MB