-
Notifications
You must be signed in to change notification settings - Fork 81
212 lines (185 loc) · 6.47 KB
/
tests.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
name: Tests
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
schedule:
- cron: '0 0 * * 0'
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}
cancel-in-progress: true
env:
PIP_NO_BINARY: rasterio
DEBIAN_FRONTEND: noninteractive
jobs:
linting:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- uses: pre-commit/action@v3.0.1
docker_tests:
needs: linting
runs-on: ubuntu-latest
name: Docker | GDAL=${{ matrix.gdal-version }} | python=${{ matrix.python-version }} | rasterio${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }}
container: ghcr.io/osgeo/gdal:ubuntu-full-${{ matrix.gdal-version }}
strategy:
fail-fast: false
matrix:
python-version: ['3.10', '3.11', '3.12']
rasterio-version: ['']
xarray-version: ['']
numpy-version: ['']
run-with-scipy: ['YES']
gdal-version: ['3.8.2']
include:
- python-version: '3.10'
rasterio-version: ''
xarray-version: '==2022.3.0'
numpy-version: '<2'
run-with-scipy: 'YES'
gdal-version: '3.6.4'
- python-version: '3.10'
rasterio-version: ''
xarray-version: ''
numpy-version: ''
run-with-scipy: 'NO'
gdal-version: '3.7.3'
steps:
- uses: actions/checkout@v4
- name: Update
run: |
rm /etc/apt/sources.list.d/apache-arrow.sources
apt-get update
apt-get -y install software-properties-common
add-apt-repository -y ppa:deadsnakes/ppa
apt-get update
- name: Set up Python ${{ matrix.python-version }}
run: |
apt-get install -y --no-install-recommends \
python${{ matrix.python-version }} \
python${{ matrix.python-version }}-dev \
python${{ matrix.python-version }}-venv \
python3-pip \
g++ \
git
chown -R $(whoami) /github/home/
- name: Install dependencies
run: |
python${{ matrix.python-version }} -m venv testenv
. testenv/bin/activate
python -m pip install --upgrade pip
export INSTALL_DEPS='rasterio${{ matrix.rasterio-version }} xarray${{ matrix.xarray-version }} numpy${{ matrix.numpy-version }}'
[ "${{ matrix.run-with-scipy }}" = "YES" ] && export INSTALL_DEPS="${INSTALL_DEPS} scipy"
python -m pip install $INSTALL_DEPS
python -m pip install -e .[all]
python -m pip install -r requirements/test.txt
- name: run tests
run: |
. testenv/bin/activate
python -m pytest --cov-report term-missing --cov=rioxarray --cov-report xml
- uses: codecov/codecov-action@v4
conda_test:
needs: linting
name: ${{ matrix.os }} | ${{ matrix.python-version }} | rasterio-${{ matrix.rasterio-version }} | scipy ${{ matrix.run-with-scipy }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: true
matrix:
os: [ubuntu-latest, macos-13, windows-latest]
python-version: ['3.10', '3.11', '3.12']
rasterio-version: ['*']
xarray-version: ['*']
run-with-scipy: ['YES']
steps:
- uses: actions/checkout@v4
- name: Setup Conda
uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
environment-name: test
create-args: >-
python=${{ matrix.python-version }}
rasterio=${{ matrix.rasterio-version }}
xarray=${{ matrix.xarray-version }}
pyproj
netcdf4
dask
pandoc
- name: Install Env
shell: bash
run: |
[ "${{ matrix.run-with-scipy }}" = "YES" ] && micromamba install -n test scipy
micromamba run -n test python -m pip install -e .[all]
micromamba run -n test python -m pip install -r requirements/dev.txt
- name: Check and Log Environment
shell: bash
run: |
micromamba run -n test python -V
micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();"
micromamba info
- name: pylint
if: matrix.python-version == '3.10'
shell: bash
run: |
micromamba run -n test pylint rioxarray/
- name: mypy
shell: bash
if: matrix.python-version == '3.10'
run: |
micromamba run -n test mypy rioxarray/
- name: Test
shell: bash
run: |
micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml
- name: Test Build docs
shell: bash
if: contains(matrix.os, 'ubuntu')
run: |
micromamba run -n test sphinx-build -b html docs/ docs/_build/
- uses: codecov/codecov-action@v4
test_latest:
needs: linting
name: Test latest dependencies
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Setup Conda
uses: mamba-org/setup-micromamba@v1
with:
init-shell: bash
environment-name: test
create-args: >-
python=3.10
proj
libgdal
cython
netcdf4
- name: Install Env
shell: bash
run: |
micromamba run -n test python -m pip install \
--index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple \
--no-deps --pre --upgrade \
numpy \
pandas \
scipy;
micromamba run -n test python -m pip install --upgrade \
git+https://github.com/dask/dask.git@main \
git+https://github.com/dask/distributed.git@main \
git+https://github.com/mapbox/rasterio.git@main \
git+https://github.com/pyproj4/pyproj.git@main \
git+https://github.com/pydata/xarray.git@main;
micromamba run -n test python -m pip install -e .[all]
micromamba run -n test python -m pip install -r requirements/test.txt
- name: Check and Log Environment
shell: bash
run: |
micromamba run -n test python -V
micromamba run -n test python -c "import rioxarray; rioxarray.show_versions();"
micromamba info
- name: Test
shell: bash
run: |
micromamba run -n test pytest --cov-report term-missing --cov=rioxarray --cov-report xml