Some tests started to fail with rasterio 1.4.3

[imincik]

Problem description

In nixpkgs, Some tests started to fail with rasterio 1.4.3 (see: NixOS/nixpkgs#362893 (comment)).

$ nix-build -A python3Packages.rioxarray

...

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED test/integration/test_integration__io.py::test_rasterio_environment - Failed: DID NOT RAISE <class 'Exception'>
FAILED test/integration/test_integration_merge.py::test_merge__different_crs[True] - AssertionError:
FAILED test/integration/test_integration_merge.py::test_merge__different_crs[False] - AssertionError:
= 3 failed, 459 passed, 17 skipped, 8 deselected, 2 xfailed, 2 xpassed, 419 warnings in 7.45s =
error: build of '/nix/store/5q8bxayw0qlli4h20i2pvy9b6f6pksxn-python3.12-rioxarray-0.18.1.drv' on 'ssh-ng://im-builder.tail6adb8.ts.net' failed: builder for '/nix/store/5q8bxayw0qlli4h20i2pvy9b6f6pksxn-python3.12-rioxarray-0.18.1.drv' failed with exit code 1;
       last 10 log lines:
       >
       > test/integration/test_integration_xarray_plugin.py::test_open_multiple_resolution
       >   <frozen _collections_abc>:868: RuntimeWarning: deallocating CachingFileManager(<function open at 0x7ffee13b0040>, 'HDF4_EOS:EOS_GRID:/build/source/test/test_data/input/MOD09GA.A2008296.h14v17.006.2015181011753.hdf:MODIS_Grid_500m_2D:num_observations_500m', mode='r', kwargs={'sharing': False}, manager_id='9b01d24c-019c-4c4e-976a-29a7be5fff32'), but file is not already closed. This may indicate a bug.
       >
       > -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
       > =========================== short test summary info ============================
       > FAILED test/integration/test_integration__io.py::test_rasterio_environment - Failed: DID NOT RAISE <class 'Exception'>
       > FAILED test/integration/test_integration_merge.py::test_merge__different_crs[True] - AssertionError:
       > FAILED test/integration/test_integration_merge.py::test_merge__different_crs[False] - AssertionError:
       > = 3 failed, 459 passed, 17 skipped, 8 deselected, 2 xfailed, 2 xpassed, 419 warnings in 7.45s =
       For full logs, run 'nix log /nix/store/5q8bxayw0qlli4h20i2pvy9b6f6pksxn-python3.12-rioxarray-0.18.1.drv'.
error: builder for '/nix/store/5q8bxayw0qlli4h20i2pvy9b6f6pksxn-python3.12-rioxarray-0.18.1.drv' failed with exit code 1

__________________________ test_rasterio_environment ___________________________

    def test_rasterio_environment():
        with create_tmp_geotiff() as (tmp_file, expected):
            # Should fail with error since suffix not allowed
>           with pytest.raises(Exception):
E           Failed: DID NOT RAISE <class 'Exception'>

test/integration/test_integration__io.py:869: Failed

test/integration/test_integration_merge.py:94:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

args = (<xarray.DataArray '__xarray_dataarray_variable__' ()> Size: 8B
array(-131734881)
Coordinates:
    spatial_ref  int64 8B 0, -126821853)
kwds = {}

    @wraps(func)
    def inner(*args, **kwds):
        with self._recreate_cm():
>           return func(*args, **kwds)
E           AssertionError:
E           Arrays are not almost equal to 7 decimals
E            ACTUAL: <xarray.DataArray '__xarray_dataarray_variable__' ()> Size: 8B
E           array(-131734881)
E           Coordinates:
E               spatial_ref  int64 8B 0
E            DESIRED: -126821853

/nix/store/zv1kaq7f1q20x62kbjv6pfjygw5jmwl6-python3-3.12.7/lib/python3.12/contextlib.py:81: AssertionError

test/integration/test_integration_merge.py:94:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

args = (<xarray.DataArray ()> Size: 8B
array(-131734881)
Coordinates:
    spatial_ref  int64 8B 0, -126821853)
kwds = {}

    @wraps(func)
    def inner(*args, **kwds):
        with self._recreate_cm():
>           return func(*args, **kwds)
E           AssertionError:
E           Arrays are not almost equal to 7 decimals
E            ACTUAL: <xarray.DataArray ()> Size: 8B
E           array(-131734881)
E           Coordinates:
E               spatial_ref  int64 8B 0
E            DESIRED: -126821853

/nix/store/zv1kaq7f1q20x62kbjv6pfjygw5jmwl6-python3-3.12.7/lib/python3.12/contextlib.py:81: AssertionError

[this should explain why the current behavior is a problem and why the expected output is a better solution.]

Expected Output

Tests should successfully pass.

Environment Information

• python -c "import rioxarray; rioxarray.show_versions()"

• rioxarray version (python -c "import rioxarray; print(rioxarray.__version__)")
• rasterio version (rio --version)
• GDAL version (rio --gdal-version)
• Python version (python -c "import sys; print(sys.version.replace('\n', ' '))")
• Operation System Information (python -c "import platform; print(platform.platform())")

Installation method

• conda, pypi, from source, etc...

Conda environment information (if you installed with conda):

Environment (conda list):

$ conda list | grep -E "rasterio|xarray|gdal"

Details about conda and system ( conda info ):

$ conda info

[imincik]

@snowman2 , thanks for fix,