test_bfabric_sample.py

#!/usr/bin/env python3
# -*- coding: latin1 -*-

"""
unittest by <cp@fgcz.ethz.ch>
"""

import unittest
from bfabric import Bfabric

"""
ssh localhost "cat > /tmp/bb.py && /usr/bin/python /tmp/bb.py" < PycharmProjects/untitled/bfabric_wsdl.py 
"""
class BfabricTestCase(unittest.TestCase):

    workunits = []
    samples = []


    bfapp = Bfabric(verbose=True)
    def sample_save(self):
        print("SAVE SAMPLE")
        sample_type = 'Biological Sample - Proteomics'
        species = "n/a"
        for name in [1, 2, 3]:
            res = self.bfapp.save_object(endpoint='sample', obj={'name': "unit test - #{} - {}".format(name, sample_type),
                                                                   'containerid': 3000,
                                                                   'type' : sample_type,
                                                                   'species' : species,
                                                                   'samplingdate' : "2017-10-12",
                                                                   'groupingvar' : "A",
                                                                   'description': '68b329da9893e34099c7d8ad5cb9c940'
                                                                   })

            for i in res:
                print (i)
            #self.samples.append(res[0].id)

    def sample_delete(self):
        print("SAMPLE DELETE")
        print(self.samples)
        res = [self.bfapp.delete_object(endpoint='sample', id=x)[0] for x in self.samples]
        res = [x for x in res if "removed successfully." in x.deletionreport]
        print(res)
        self.assertEqual(len(res), len(self.samples))

    def test_sample(self):
        self.sample_save()
        # self.sample_delete()

if __name__ == '__main__':
    unittest.main()