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Proposed Analysis: Create JSON files for CNV tables #68

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jharenza opened this issue Jun 24, 2021 · 1 comment

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jharenza commented Jun 24, 2021 •

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What are the scientific goals of the analysis?

Convert the files produced in #66 to JSONL for load to OT portal.

What methods do you plan to use to accomplish the scientific goals?

possibly pandas as per https://stackoverflow.com/questions/51775175/pandas-dataframe-to-jsonl-json-lines-conversion

What input data are required for this analysis?

Files produced from #66 (PR TBD)

How long do you expect is needed to complete the analysis? Will it be a multi-step analysis?

?

Who will complete the analysis (please add a GitHub handle here if relevant)?

@ewafula @sangeetashukla @afarrel or @taylordm

What relevant scientific literature relates to this analysis?

NA

Should we put these files in S3?

jharenza assigned ewafula

ewafula mentioned this issue

Annotate CNV table with mutation frequencies d3b-center/OpenPedCan-analysis#52

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5 tasks

runjin326 commented Sep 16, 2021

Closing with PR52 merged

runjin326 closed this as completed

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