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Full-atom output PDB #1

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BJHardy opened this issue Jan 23, 2024 · 4 comments
Open

Full-atom output PDB #1

BJHardy opened this issue Jan 23, 2024 · 4 comments

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@BJHardy
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BJHardy commented Jan 23, 2024

Hi Justas, thank you for making this code available!

The output PDBs only contain backbone residues but have the residue names are consistent with the designed sequence. Is there a way to get output PDBs containing sidechain information?

@dauparas
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Hello! Yes, I am planning to add the code to do this soon.

@JasonIsaac-Lofty
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Hello! Yes, I am planning to add the code to do this soon.

Thank you for your great work!
If I want to get the full-atomic output now, what should I do? The location of the ligand or metal will be lost when I tried to use protein structure prediction software.

@BJHardy
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BJHardy commented Feb 27, 2024

Thanks Justas! Do you have an update on when the all-atom output will be available?

@amelie-iska
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Any updates on this? I would love to have sidechain conformations.

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4 participants