WARNING: PhyML binary is not in the list of compatibility

[AlexWanghaoming]

Hi,
It seems that the PhyML in the package can not be used. Also, the compatible versions: 20130103 20131022 20141009 20141029 20150501 20151222 can not be found in the https://github.com/stephaneguindon/phyml/releases/tag/
Thanks

[plubbe]

Hi -

Has anyone fixed this issue? I've tried the chmod +x suggestion that worked for a slightly different problem (although I already had execute permissions), and I've also tried putting older versions of the PhyML binaries in the same folder (jmodeltest-2.1.10/exe/phyml/) but no luck. I'm running this on MacOS Catalina. Any suggestions?

Thank you :)

[santrer]

I have the same problem. Did anyone manage to fix it? I can't run any analyses.

[brunomioto]

I had this same problem. Then I tried jmodeltest-2.1.7, trimming long names (#22) and it worked!
But > 2.1.7 didn't work.

[TeresaPegan]

I am having the same problem. It seems like version 2.1.10 is simply not usable with phyml right now. I also cannot find a copy of jmodeltest-2.1.7 except on third party websites.

I don't think I can use jmodeltest at all until this is resolved?

Thanks,
-Teresa

[MordorianGuy]

This bug is encountered on non-Linux OSs. To my mind, this is due to this line of code:

	private static boolean checkPhymlCompatibility(String binary) {
		boolean binaryFound = false;
		if (Utilities.findCurrentOS() != Utilities.OS_LINUX)
			return false;

As I get free, I will try to fix it, test, & make a pull-request.