From 3e432f08a12b4028c55846154157450e115eed6b Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Wed, 15 Jul 2020 11:35:51 -0500 Subject: [PATCH 1/9] Refactor FigureExtractor to have client/core features. Closes #1760 --- src/common/viz/FigureExtractor.js | 486 +++++++++------ .../ExecutionIndex/ExecutionIndexControl.js | 6 +- .../panels/PlotlyGraph/PlotlyGraphControl.js | 7 +- test/unit/common/viz/FigureExtractor.spec.js | 53 ++ test/unit/common/viz/FigureReference.json | 589 ++++++++++++++++++ 5 files changed, 956 insertions(+), 185 deletions(-) create mode 100644 test/unit/common/viz/FigureExtractor.spec.js create mode 100644 test/unit/common/viz/FigureReference.json diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index 5e76bccc2..f56aae42e 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -17,210 +17,334 @@ define(['./Utils'], function (Utils) { } }; - const FigureExtractor = function (client) { - this._client = client; + const extractPointsArray = function (pair) { + const pointsArr = pair.split(',').map(num => parseFloat(num)); + let cartesianPoint = {x: pointsArr[0], y: pointsArr[1]}; + if (pointsArr.length === 3) { + cartesianPoint.z = pointsArr[2]; + } + return cartesianPoint; }; - FigureExtractor.prototype.constructor = FigureExtractor; + class AbstractFigureExtractor { + extract (nodeInfo) { + const extractorFn = nodeInfo.meta_type; + ensureCanExtract(extractorFn); + return this[extractorFn](nodeInfo); + } - FigureExtractor.prototype.extract = function(node) { - const extractorFn = this.getMetaType(node); - ensureCanExtract(extractorFn); - return this[extractorFn](node); - }; + extractChildrenOfType (nodeInfo, metaType) { + const children = nodeInfo.children; + return children.filter(childInfo => childInfo.meta_type === metaType) + .map(childInfo => this.extract(childInfo)); + } - FigureExtractor.prototype.extractChildrenOfType = function(node, metaType) { - const children = this.getMetadataChildrenIds(node).map(id => this._client.getNode(id)); - return children.filter(node => this.getMetaType(node) === metaType) - .map(child => this.extract(child)); - }; + [EXTRACTORS.GRAPH] (nodeInfo) { + const id = nodeInfo.id, + execId = nodeInfo.execution_id; - FigureExtractor.prototype[EXTRACTORS.GRAPH] = function(node) { - const id = node.getId(), - execId = this.getExecutionId(node); - - let desc = { - id: id, - execId: execId, - type: 'graph', - name: node.getAttribute('name'), - graphId: node.getAttribute('id'), - title: node.getAttribute('title'), - }; - - let childrenIds = this.getMetadataChildrenIds(node); - - let childNode, childNodeFn; - desc.subGraphs = childrenIds.map((childId) => { - childNode = this._client.getNode(childId); - childNodeFn = this.getMetaType(childNode); - ensureCanExtract(childNodeFn); - return this[childNodeFn](childNode); - }); - desc.subGraphs.sort(this.compareSubgraphIDs); - return desc; - }; + let desc = { + id: id, + execId: execId, + type: 'graph', + name: nodeInfo.attributes.name, + graphId: nodeInfo.attributes.id, + title: nodeInfo.attributes.title + }; - FigureExtractor.prototype[EXTRACTORS.SUBGRAPH] = function(node){ - const id = node.getId(), - graphId = node.getParentId(), - execId = this.getExecutionId(node); - let desc; - - desc = { - id: id, - execId: execId, - type: this.getMetaType(node) === EXTRACTORS.PLOT3D ? 'plot3D' : 'plot2D', - graphId: this._client.getNode(graphId).getAttribute('id'), - subgraphId: node.getAttribute('id'), - subgraphName: node.getAttribute('name'), - title: node.getAttribute('title'), - xlim: node.getAttribute('xlim'), - ylim: node.getAttribute('ylim'), - xlabel: node.getAttribute('xlabel'), - ylabel: node.getAttribute('ylabel'), - }; - - desc.lines = this.extractChildrenOfType(node, EXTRACTORS.LINE); - desc.scatterPoints = this.extractChildrenOfType(node, EXTRACTORS.SCATTER_POINTS); - return desc; - }; + desc.subGraphs = nodeInfo.children.map((childInfo) => { + const childNodeFn = childInfo.meta_type; + ensureCanExtract(childNodeFn); + return this[childNodeFn](childInfo); + }); + return desc; + } - FigureExtractor.prototype[EXTRACTORS.PLOT2D] = function (node) { - let desc = this[EXTRACTORS.SUBGRAPH](node); - desc.images = this.extractChildrenOfType(node, EXTRACTORS.IMAGE); - return desc; - }; + [EXTRACTORS.SUBGRAPH] (nodeInfo) { + const id = nodeInfo.id, + graphId = nodeInfo.parent_id, + execId = this.execution_id; + let desc; - FigureExtractor.prototype[EXTRACTORS.PLOT3D] = function(node) { - let desc = this[EXTRACTORS.SUBGRAPH](node); - desc.zlim = node.getAttribute('zlim'); - desc.zlabel = node.getAttribute('zlabel'); - return desc; - }; + desc = { + id: id, + execId: execId, + type: nodeInfo.meta_type === EXTRACTORS.PLOT3D ? 'plot3D' : 'plot2D', + graphId: graphId, + subgraphId: nodeInfo.attributes.id, + subgraphName: nodeInfo.attributes.name, + title: nodeInfo.attributes.title, + xlim: nodeInfo.attributes.xlim, + ylim: nodeInfo.attributes.ylim, + xlabel: nodeInfo.attributes.xlabel, + ylabel: nodeInfo.attributes.ylabel, + }; - FigureExtractor.prototype[EXTRACTORS.LINE] = function (node) { - const id = node.getId(), - execId = this.getExecutionId(node); - let points, desc; - - points = node.getAttribute('points').split(';') - .filter(data => !!data) // remove any '' - .map(pair => extractPointsArray(pair)); - - desc = { - id: id, - execId: execId, - subgraphId: this._client.getNode(node.getParentId()).getAttribute('id'), - lineName: node.getAttribute('name'), - label: node.getAttribute('label'), - lineWidth: node.getAttribute('lineWidth'), - marker: node.getAttribute('marker'), - name: node.getAttribute('name'), - type: 'line', - points: points, - color: node.getAttribute('color') - }; - return desc; - }; + desc.lines = this.extractChildrenOfType(nodeInfo, EXTRACTORS.LINE); + desc.scatterPoints = this.extractChildrenOfType(nodeInfo, EXTRACTORS.SCATTER_POINTS); + return desc; + } - FigureExtractor.prototype[EXTRACTORS.IMAGE] = function (node) { - const id = node.getId(), - execId = this.getExecutionId(node), - imageHeight = node.getAttribute('height'), - imageWidth = node.getAttribute('width'), - numChannels = node.getAttribute('numChannels'); - const colorModel = numChannels === 3 ? 'rgb' : 'rgba'; - return { - id: id, - execId: execId, - subgraphId: this._client.getNode(node.getParentId()).getAttribute('id'), - type: 'image', - width: imageWidth, - height: imageHeight, - colorModel: colorModel, - visible: node.getAttribute('visible'), - rgbaMatrix: Utils.base64ToImageArray(node.getAttribute('rgbaMatrix'), imageWidth, imageHeight, numChannels) - }; - }; - FigureExtractor.prototype[EXTRACTORS.SCATTER_POINTS] = function(node) { - const id = node.getId(), - execId = this.getExecutionId(node); - let points, desc; - - points = node.getAttribute('points').split(';') - .filter(data => !!data) // remove any '' - .map(pair => extractPointsArray(pair)); - desc = { - id: id, - execId: execId, - subgraphId: this._client.getNode(node.getParentId()).getAttribute('id'), - marker: node.getAttribute('marker'), - name: node.getAttribute('name'), - type: 'scatterPoints', - points: points, - width: node.getAttribute('width'), - color: node.getAttribute('color') - }; - - return desc; - }; + [EXTRACTORS.PLOT2D] (nodeInfo) { + let desc = this[EXTRACTORS.SUBGRAPH](nodeInfo); + desc.images = this.extractChildrenOfType(nodeInfo, EXTRACTORS.IMAGE); + return desc; + } - FigureExtractor.prototype.compareSubgraphIDs = function (desc1, desc2) { - if (desc1.subgraphId >= desc2.subgraphId) return 1; - else return -1; - }; + [EXTRACTORS.PLOT3D] (nodeInfo) { + let desc = this[EXTRACTORS.SUBGRAPH](nodeInfo); + desc.zlim = nodeInfo.attributes.zlim; + desc.zlabel = nodeInfo.attributes.zlabel; + return desc; + } + + [EXTRACTORS.LINE] (nodeInfo) { + const id = nodeInfo.id, + execId = nodeInfo.execution_id; + let points, desc; - FigureExtractor.prototype.getExecutionId = function (node) { - const executionNode = this._getContainmentParentNodeAt(node, 'Execution'); - if (executionNode){ - return executionNode.getId(); + points = nodeInfo.attributes.points.split(';') + .filter(data => !!data) // remove any '' + .map(pair => extractPointsArray(pair)); + + desc = { + id: id, + execId: execId, + subgraphId: nodeInfo.parent_id, + lineName: nodeInfo.attributes.name, + label: nodeInfo.attributes.label, + lineWidth: nodeInfo.attributes.lineWidth, + marker: nodeInfo.attributes.marker, + name: nodeInfo.attributes.name, + type: 'line', + points: points, + color: nodeInfo.attributes.color + }; + return desc; } - }; - FigureExtractor.prototype.getMetadataChildrenIds = function (node) { - const allMetaNodes = this._client.getAllMetaNodes(); - const metadataBaseNode = allMetaNodes - .find(node => node.getAttribute('name') === BASE_METADATA_TYPE); + [EXTRACTORS.IMAGE] (nodeInfo) { + const id = nodeInfo.id, + execId = nodeInfo.execution_id, + imageHeight = nodeInfo.attributes.height, + imageWidth = nodeInfo.attributes.width, + numChannels = nodeInfo.attributes.numChannels; + const colorModel = numChannels === 3 ? 'rgb' : 'rgba'; + return { + id: id, + execId: execId, + subgraphId: nodeInfo.parent_id, + type: 'image', + width: imageWidth, + height: imageHeight, + colorModel: colorModel, + visible: nodeInfo.attributes.visible, + rgbaMatrix: Utils.base64ToImageArray(nodeInfo.attributes.rgbaMatrix, imageWidth, imageHeight, numChannels) + }; + } + + [EXTRACTORS.SCATTER_POINTS] (nodeInfo) { + const id = nodeInfo.id, + execId = nodeInfo.execution_id; + let points, desc; + + points = nodeInfo.attributes.points.split(';') + .filter(data => !!data) // remove any '' + .map(pair => extractPointsArray(pair)); + desc = { + id: id, + execId: execId, + subgraphId: nodeInfo.parent_id, + marker: nodeInfo.attributes.marker, + name: nodeInfo.attributes.name, + type: 'scatterPoints', + points: points, + width: nodeInfo.attributes.width, + color: nodeInfo.attributes.color + }; + + return desc; + } + + getExecutionId (node) { + throw new Error('getExecutionId is not implemented'); + } + + getGraphNode (node) { + throw new Error('getGraphNode is not implemented'); + } + + _getContainmentParentNodeAt (node, metaType) { + throw new Error('_getContainmentParentNodeAt is not implemented'); + } + + getMetaType (node) { + throw new Error('getMetaType is not implmented'); + } + + GMENodeToMetadataJSON (node, shallow=false) { + throw new Error('GMENodeTOMetadataJSON is not implemented'); + } + } + + class ClientFigureExtractor extends AbstractFigureExtractor { + constructor(client) { + super(); + this._client = client; + } + + getExecutionId (node) { + const executionNode = this._getContainmentParentNodeAt(node, 'Execution'); + if (executionNode){ + return executionNode.getId(); + } + } + + getMetadataChildrenIds (node) { + const allMetaNodes = this._client.getAllMetaNodes(); + const metadataBaseNode = allMetaNodes + .find(node => node.getAttribute('name') === BASE_METADATA_TYPE); + + if(metadataBaseNode) { + return node.getChildrenIds().filter(id => { + return this._client.isTypeOf(id, metadataBaseNode.getId()); + }); + } else { + return []; + } + } + + getGraphNode (node) { + return this._getContainmentParentNodeAt(node, 'Graph'); + } + + _getContainmentParentNodeAt (node, metaType) { + let currentNode = node, + parentId = currentNode.getParentId(); + const isMetaType = node => this.getMetaType(node) === metaType; + while (parentId !== null && !isMetaType(currentNode)) { + currentNode = this._client.getNode(parentId); + parentId = currentNode.getParentId(); + } + return isMetaType(currentNode) ? currentNode : null; + } + + getMetaType (node) { + const metaTypeId = node.getMetaTypeId(); + const metaNode = this._client.getNode(metaTypeId); + if(metaNode) { + return metaNode.getAttribute('name'); + } + } + + GMENodeToMetadataJSON (node, shallow=false) { + const json = { + id: node.getId(), + parent_id: node.getParentId(), + execution_id: this.getExecutionId(node), + meta_type: this.getMetaType(node), + attributes: {}, + attributes_meta: {} + }; + + node.getOwnAttributeNames().forEach(name => { + json.attributes[name] = node.getAttribute(name); + }); - if(metadataBaseNode) { - return node.getChildrenIds().filter(id => { - return this._client.isTypeOf(id, metadataBaseNode.getId()); + node.getOwnValidAttributeNames().forEach(name => { + json.attributes_meta[name] = node.getAttribute(name); }); - } else { - return []; + + if(!shallow) { + json.children = []; + const children = this.getMetadataChildrenIds(node).map(id => this._client.getNode(id)); + children.forEach(node => { + json.children.push(this.GMENodeToMetadataJSON(node)); + }); + } + return json; } - }; + } - FigureExtractor.prototype.getGraphNode = function(node) { - return this._getContainmentParentNodeAt(node, 'Graph'); - }; + class CoreFigureExtractor extends AbstractFigureExtractor { + constructor(core, rootNode) { + super(); + this._core = core; + this._rootNode = rootNode; + } - FigureExtractor.prototype._getContainmentParentNodeAt = function(node, metaType){ - let currentNode = node, - parentId = currentNode.getParentId(); - const isMetaType = node => this.getMetaType(node) === metaType; - while (parentId !== null && !isMetaType(currentNode)) { - currentNode = this._client.getNode(parentId); - parentId = currentNode.getParentId(); + getExecutionId (node) { + const executionNode = this._getContainmentParentNodeAt(node, 'Execution'); + if(executionNode) { + return this._core.getPath(executionNode); + } } - return isMetaType(currentNode) ? currentNode : null; - }; - FigureExtractor.prototype.getMetaType = function (node) { - const metaTypeId = node.getMetaTypeId(); - return this._client.getNode(metaTypeId).getAttribute('name'); - }; + async getMetadataChildren (node) { + const children = await this._core.loadChildren(node); + const allMetaNodes = this._core.getAllMetaNodes(this._rootNode); + const metadataNodePath = Object.keys(allMetaNodes).find(nodeId => { + return this.getMetaType(allMetaNodes[nodeId]) === BASE_METADATA_TYPE; + }); - const extractPointsArray = function (pair) { - const pointsArr = pair.split(',').map(num => parseFloat(num)); - let cartesianPoint = {x: pointsArr[0], y: pointsArr[1]}; - if (pointsArr.length === 3) { - cartesianPoint.z = pointsArr[2]; + return children.filter( + child => { + return this._core.isTypeOf(child, metadataNodePath); + } + ); } - return cartesianPoint; - }; - return FigureExtractor; + getGraphNode (node) { + return this._getContainmentParentNodeAt(node, 'Graph'); + } + + _getContainmentParentNodeAt (node, metaType) { + let currentNode = node, + parent = this._core.getParent(node); + const isMetaType = node => this.getMetaType(node) === metaType; + + while(parent != null && !isMetaType(currentNode)){ + currentNode = parent; + parent = this._core.getParent(currentNode); + } + return isMetaType(currentNode) ? currentNode : null; + } + + getMetaType (node) { + if (node) { + return this._core.getAttribute(this._core.getMetaType(node), 'name'); + } + } + + async GMENodeToMetadataJSON (node, shallow=false) { + const json = { + id: this._core.getPath(node), + parent_id: this._core.getPath(this._core.getParent(node)), + execution_id: this.getExecutionId(node), + meta_type: this.getMetaType(node), + attributes: {}, + attributes_meta: {} + }; + + this._core.getOwnAttributeNames(node).forEach(name => { + json.attributes[name] = this._core.getAttribute(node, name); + }); + + this._core.getOwnValidAttributeNames(node).forEach(name => { + json.attributes_meta[name] = this._core.getAttribute(node, name); + }); + + if(!shallow) { + json.children = []; + const children = await this.getMetadataChildren(node); + for (let i = 0; i < children.length; i++) { + json.children.push(await this.GMENodeToMetadataJSON(children[i])); + } + } + return json; + } + } + + return { ClientFigureExtractor, CoreFigureExtractor }; }); diff --git a/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js b/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js index 7546b11a5..ca1a618bb 100644 --- a/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js +++ b/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js @@ -14,6 +14,7 @@ define([ ) { 'use strict'; + const ClientFigureExtractor = FigureExtractor.ClientFigureExtractor; var ExecutionIndexControl; @@ -32,7 +33,7 @@ define([ this._graphsForExecution = {}; this._graphToExec = {}; this._pipelineNames = {}; - this.figureExtractor = new FigureExtractor(this._client); + this.figureExtractor = new ClientFigureExtractor(this._client); this.abbrToId = {}; this.abbrFor = {}; @@ -284,7 +285,8 @@ define([ ExecutionIndexControl.prototype.getGraphDesc = function (graphNode) { let id = graphNode.getId(); - let desc = this.figureExtractor.extract(graphNode); + const graphInfo = this.figureExtractor.GMENodeToMetadataJSON(graphNode); + let desc = this.figureExtractor.extract(graphInfo); if (!this._graphToExec[id]) { this._graphsForExecution[desc.execId] = id; diff --git a/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js b/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js index 96db10ac2..c7be04a0c 100644 --- a/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js +++ b/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js @@ -9,6 +9,7 @@ define([ ) { 'use strict'; + const ClientFigureExtractor = FigureExtractor.ClientFigureExtractor; function PlotlyGraphControl(options) { @@ -24,7 +25,7 @@ define([ this._currentNodeId = null; this._currentNodeParentId = undefined; - this.figureExtractor = new FigureExtractor(this._client); + this.figureExtractor = new ClientFigureExtractor(this._client); this._logger.debug('ctor finished'); } @@ -71,7 +72,9 @@ define([ hasGraph = !!graphNode; } if(hasGraph){ - desc = this.figureExtractor.extract(graphNode); + const graphInfo = this.figureExtractor.GMENodeToMetadataJSON(graphNode); + console.log(graphInfo); + desc = this.figureExtractor.extract(graphInfo); } return desc; }; diff --git a/test/unit/common/viz/FigureExtractor.spec.js b/test/unit/common/viz/FigureExtractor.spec.js new file mode 100644 index 000000000..63e5bae1c --- /dev/null +++ b/test/unit/common/viz/FigureExtractor.spec.js @@ -0,0 +1,53 @@ +describe('FigureExtractor', function() { + const testFixture = require('../../../globals'); + const assert = require('assert'); + const fs = require('fs'); + const path = require('path'); + const FigureExtractor = testFixture.requirejs('deepforge/viz/FigureExtractor').CoreFigureExtractor; + const gmeConfig = testFixture.getGmeConfig(); + const logger = testFixture.logger.fork('FigureExtractor'); + const GRAPH_NODE_PATH = '/K/n/d/2'; + const REFERENCE_JSON = path.resolve(__dirname, 'FigureReference.json'); + let project, + gmeAuth, + storage, + commitHash, + rootNode, + core; + + before(async function () { + const projectName = 'testProject'; + gmeAuth = await testFixture.clearDBAndGetGMEAuth(gmeConfig, projectName); + storage = testFixture.getMemoryStorage(logger, gmeConfig, gmeAuth); + await storage.openDatabase(); + const importParam = { + projectSeed: testFixture.path.join(testFixture.DF_SEED_DIR, 'devProject', 'devProject.webgmex'), + projectName: projectName, + branchName: 'master', + logger: logger, + gmeConfig: gmeConfig + }; + + const importResult = await testFixture.importProject(storage, importParam); + project = importResult.project; + commitHash = importResult.commitHash; + core = importResult.core; + rootNode = importResult.rootNode; + await project.createBranch('test', commitHash); + }); + + it('should convert graphNode to JSON', async () => { + const graphNode = await core.loadByPath(rootNode, GRAPH_NODE_PATH); + const figureExtractor = new FigureExtractor(core, graphNode); + assert(figureExtractor.getMetaType(graphNode) === 'Graph'); + const exportedJSON = (await figureExtractor.GMENodeToMetadataJSON(graphNode)); + const referenceJSON = JSON.parse(fs.readFileSync(REFERENCE_JSON)); + assert.deepEqual(exportedJSON, referenceJSON); + }); + + after(async function () { + await storage.closeDatabase(); + await gmeAuth.unload(); + }); + +}); diff --git a/test/unit/common/viz/FigureReference.json b/test/unit/common/viz/FigureReference.json new file mode 100644 index 000000000..cada5d72a --- /dev/null +++ b/test/unit/common/viz/FigureReference.json @@ -0,0 +1,589 @@ +{ + "id": "/K/n/d/2", + "parent_id": "/K/n/d", + "execution_id": "/K/n", + "meta_type": "Graph", + "attributes": { + "id": 1, + "title": "" + }, + "attributes_meta": {}, + "children": [ + { + "id": "/K/n/d/2/L", + "parent_id": "/K/n/d/2", + "execution_id": "/K/n", + "meta_type": "Plot2D", + "attributes": { + "title": "Axis [0,0]", + "xlabel": "x-label", + "ylabel": "y-label", + "xlim": [ + -0.3141592653589793, + 6.5973445725385655 + ], + "ylim": [ + -1.099989860936727, + 1.099994904020213 + ] + }, + "attributes_meta": {}, + "children": [ + { + "id": "/K/n/d/2/L/U", + "parent_id": "/K/n/d/2/L", + "execution_id": "/K/n", + "meta_type": "Line", + "attributes": { + "color": "#1f77b4", + "label": "line 1", + "lineStyle": "-", + "marker": "", + "points": 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+ "width": 6 + }, + "attributes_meta": {}, + "children": [] + } + ] + } + ] +} From 6b58227f30f9fcc9b8014219f636faf2a40613a5 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Wed, 15 Jul 2020 11:47:42 -0500 Subject: [PATCH 2/9] WIP- Fix unused arguments in AbstractFigureExtractor --- src/common/viz/FigureExtractor.js | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index f56aae42e..2168dd50b 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -167,23 +167,23 @@ define(['./Utils'], function (Utils) { return desc; } - getExecutionId (node) { + getExecutionId (/* node */) { throw new Error('getExecutionId is not implemented'); } - getGraphNode (node) { + getGraphNode (/* node */) { throw new Error('getGraphNode is not implemented'); } - _getContainmentParentNodeAt (node, metaType) { + _getContainmentParentNodeAt (/* node, metaType */) { throw new Error('_getContainmentParentNodeAt is not implemented'); } - getMetaType (node) { + getMetaType (/* node */) { throw new Error('getMetaType is not implmented'); } - GMENodeToMetadataJSON (node, shallow=false) { + GMENodeToMetadataJSON (/* node, shallow=false */) { throw new Error('GMENodeTOMetadataJSON is not implemented'); } } From 0691fa1ac1fba33ef96c0b109ec46bae009500b9 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Thu, 16 Jul 2020 11:33:19 -0500 Subject: [PATCH 3/9] Refactor AbstractFigureExtractor to operate on nodeInfo 1. All the functions using client/core changed to operate on NodeInfoJSON 2. Address PR review suggestions 3. Grab GraphNode from controllers: `PlotlyGraphControl`, `ExecutionIndexControl` --- src/common/viz/FigureExtractor.js | 160 +- .../ExecutionIndex/ExecutionIndexControl.js | 13 +- .../panels/PlotlyGraph/PlotlyGraphControl.js | 21 +- test/unit/common/viz/FigureExtractor.spec.js | 5 +- test/unit/common/viz/FigureReference.json | 7001 ++++++++++++++++- 5 files changed, 7029 insertions(+), 171 deletions(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index 2168dd50b..4999e7d20 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -27,21 +27,27 @@ define(['./Utils'], function (Utils) { }; class AbstractFigureExtractor { - extract (nodeInfo) { - const extractorFn = nodeInfo.meta_type; + + extract(node) { + const nodeInfo = this.toJSON(node); + return this._extract(nodeInfo); + } + + _extract (nodeInfo) { + const extractorFn = this.getMetaType(nodeInfo); ensureCanExtract(extractorFn); return this[extractorFn](nodeInfo); } extractChildrenOfType (nodeInfo, metaType) { const children = nodeInfo.children; - return children.filter(childInfo => childInfo.meta_type === metaType) - .map(childInfo => this.extract(childInfo)); + return children.filter(childInfo => this.getMetaType(childInfo) === metaType) + .map(childInfo => this._extract(childInfo)); } [EXTRACTORS.GRAPH] (nodeInfo) { const id = nodeInfo.id, - execId = nodeInfo.execution_id; + execId = this.getExecutionId(nodeInfo); let desc = { id: id, @@ -53,23 +59,24 @@ define(['./Utils'], function (Utils) { }; desc.subGraphs = nodeInfo.children.map((childInfo) => { - const childNodeFn = childInfo.meta_type; + const childNodeFn = this.getMetaType(childInfo); ensureCanExtract(childNodeFn); return this[childNodeFn](childInfo); }); + return desc; } [EXTRACTORS.SUBGRAPH] (nodeInfo) { const id = nodeInfo.id, - graphId = nodeInfo.parent_id, - execId = this.execution_id; + graphId = nodeInfo.parent.id, + execId = this.getExecutionId(nodeInfo); let desc; desc = { id: id, execId: execId, - type: nodeInfo.meta_type === EXTRACTORS.PLOT3D ? 'plot3D' : 'plot2D', + type: this.getMetaType(nodeInfo) === EXTRACTORS.PLOT3D ? 'plot3D' : 'plot2D', graphId: graphId, subgraphId: nodeInfo.attributes.id, subgraphName: nodeInfo.attributes.name, @@ -101,7 +108,7 @@ define(['./Utils'], function (Utils) { [EXTRACTORS.LINE] (nodeInfo) { const id = nodeInfo.id, - execId = nodeInfo.execution_id; + execId = this.getExecutionId(nodeInfo); let points, desc; points = nodeInfo.attributes.points.split(';') @@ -111,7 +118,7 @@ define(['./Utils'], function (Utils) { desc = { id: id, execId: execId, - subgraphId: nodeInfo.parent_id, + subgraphId: nodeInfo.parent.id, lineName: nodeInfo.attributes.name, label: nodeInfo.attributes.label, lineWidth: nodeInfo.attributes.lineWidth, @@ -126,7 +133,7 @@ define(['./Utils'], function (Utils) { [EXTRACTORS.IMAGE] (nodeInfo) { const id = nodeInfo.id, - execId = nodeInfo.execution_id, + execId = this.getExecutionId(nodeInfo), imageHeight = nodeInfo.attributes.height, imageWidth = nodeInfo.attributes.width, numChannels = nodeInfo.attributes.numChannels; @@ -134,7 +141,7 @@ define(['./Utils'], function (Utils) { return { id: id, execId: execId, - subgraphId: nodeInfo.parent_id, + subgraphId: nodeInfo.parent.id, type: 'image', width: imageWidth, height: imageHeight, @@ -146,7 +153,7 @@ define(['./Utils'], function (Utils) { [EXTRACTORS.SCATTER_POINTS] (nodeInfo) { const id = nodeInfo.id, - execId = nodeInfo.execution_id; + execId = this.getExecutionId(nodeInfo); let points, desc; points = nodeInfo.attributes.points.split(';') @@ -167,23 +174,28 @@ define(['./Utils'], function (Utils) { return desc; } - getExecutionId (/* node */) { - throw new Error('getExecutionId is not implemented'); - } - - getGraphNode (/* node */) { - throw new Error('getGraphNode is not implemented'); + getExecutionId (nodeInfo) { + return this._getContainmentParentNodeInfoAt(nodeInfo, 'Execution').id; } - _getContainmentParentNodeAt (/* node, metaType */) { - throw new Error('_getContainmentParentNodeAt is not implemented'); + _getContainmentParentNodeInfoAt (nodeInfo, metaType) { + let currentNodeInfo = nodeInfo, + parentId = currentNodeInfo.parent.id; + const isMetaType = nodeInfo => this.getMetaType(nodeInfo) === metaType; + while (parentId && !isMetaType(currentNodeInfo)) { + currentNodeInfo = currentNodeInfo.parent; + parentId = currentNodeInfo.parent.id; + } + return isMetaType(currentNodeInfo) ? currentNodeInfo : null; } - getMetaType (/* node */) { - throw new Error('getMetaType is not implmented'); + getMetaType (nodeInfo) { + if(nodeInfo.base) { + return nodeInfo.base.attributes.name; + } } - GMENodeToMetadataJSON (/* node, shallow=false */) { + toJSON (/* node, shallow=false */) { throw new Error('GMENodeTOMetadataJSON is not implemented'); } } @@ -194,13 +206,6 @@ define(['./Utils'], function (Utils) { this._client = client; } - getExecutionId (node) { - const executionNode = this._getContainmentParentNodeAt(node, 'Execution'); - if (executionNode){ - return executionNode.getId(); - } - } - getMetadataChildrenIds (node) { const allMetaNodes = this._client.getAllMetaNodes(); const metadataBaseNode = allMetaNodes @@ -215,54 +220,29 @@ define(['./Utils'], function (Utils) { } } - getGraphNode (node) { - return this._getContainmentParentNodeAt(node, 'Graph'); - } - - _getContainmentParentNodeAt (node, metaType) { - let currentNode = node, - parentId = currentNode.getParentId(); - const isMetaType = node => this.getMetaType(node) === metaType; - while (parentId !== null && !isMetaType(currentNode)) { - currentNode = this._client.getNode(parentId); - parentId = currentNode.getParentId(); + toJSON (node, shallow=false, cache={}) { + if (cache[node.getId()]) { + return cache[node.getId()]; } - return isMetaType(currentNode) ? currentNode : null; - } - - getMetaType (node) { - const metaTypeId = node.getMetaTypeId(); - const metaNode = this._client.getNode(metaTypeId); - if(metaNode) { - return metaNode.getAttribute('name'); - } - } - - GMENodeToMetadataJSON (node, shallow=false) { + const parentNode = this._client.getNode(node.getParentId()); + const baseNode = this._client.getNode(node.getBaseId()); const json = { id: node.getId(), - parent_id: node.getParentId(), - execution_id: this.getExecutionId(node), - meta_type: this.getMetaType(node), attributes: {}, - attributes_meta: {} }; - node.getOwnAttributeNames().forEach(name => { json.attributes[name] = node.getAttribute(name); }); - - node.getOwnValidAttributeNames().forEach(name => { - json.attributes_meta[name] = node.getAttribute(name); - }); - if(!shallow) { json.children = []; const children = this.getMetadataChildrenIds(node).map(id => this._client.getNode(id)); children.forEach(node => { - json.children.push(this.GMENodeToMetadataJSON(node)); + json.children.push(this.toJSON(node, false, cache)); }); } + json.parent = parentNode ? this.toJSON(parentNode, true, cache): null; + json.base = baseNode ? this.toJSON(baseNode, true, cache): null; + cache[node.getId()] = json; return json; } } @@ -274,18 +254,11 @@ define(['./Utils'], function (Utils) { this._rootNode = rootNode; } - getExecutionId (node) { - const executionNode = this._getContainmentParentNodeAt(node, 'Execution'); - if(executionNode) { - return this._core.getPath(executionNode); - } - } - async getMetadataChildren (node) { const children = await this._core.loadChildren(node); const allMetaNodes = this._core.getAllMetaNodes(this._rootNode); const metadataNodePath = Object.keys(allMetaNodes).find(nodeId => { - return this.getMetaType(allMetaNodes[nodeId]) === BASE_METADATA_TYPE; + return this._core.getAttribute(allMetaNodes[nodeId], 'name') === BASE_METADATA_TYPE; }); return children.filter( @@ -294,54 +267,29 @@ define(['./Utils'], function (Utils) { } ); } - - getGraphNode (node) { - return this._getContainmentParentNodeAt(node, 'Graph'); - } - - _getContainmentParentNodeAt (node, metaType) { - let currentNode = node, - parent = this._core.getParent(node); - const isMetaType = node => this.getMetaType(node) === metaType; - - while(parent != null && !isMetaType(currentNode)){ - currentNode = parent; - parent = this._core.getParent(currentNode); - } - return isMetaType(currentNode) ? currentNode : null; - } - - getMetaType (node) { - if (node) { - return this._core.getAttribute(this._core.getMetaType(node), 'name'); - } - } - - async GMENodeToMetadataJSON (node, shallow=false) { + async toJSON (node, shallow=false, cache={}) { const json = { id: this._core.getPath(node), - parent_id: this._core.getPath(this._core.getParent(node)), - execution_id: this.getExecutionId(node), - meta_type: this.getMetaType(node), attributes: {}, - attributes_meta: {} }; this._core.getOwnAttributeNames(node).forEach(name => { json.attributes[name] = this._core.getAttribute(node, name); }); - this._core.getOwnValidAttributeNames(node).forEach(name => { - json.attributes_meta[name] = this._core.getAttribute(node, name); - }); + const parentNode = this._core.getParent(node); + const baseNode = this._core.getBase(node); if(!shallow) { json.children = []; const children = await this.getMetadataChildren(node); for (let i = 0; i < children.length; i++) { - json.children.push(await this.GMENodeToMetadataJSON(children[i])); + json.children.push(await this.toJSON(children[i])); } } + json.parent = parentNode ? await this.toJSON(parentNode, true, cache): null; + json.base = baseNode ? await this.toJSON(baseNode, true, cache): null; + cache[this._core.getPath(node)] = json; return json; } } diff --git a/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js b/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js index ca1a618bb..c5b23a0ef 100644 --- a/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js +++ b/src/visualizers/panels/ExecutionIndex/ExecutionIndexControl.js @@ -15,6 +15,8 @@ define([ 'use strict'; const ClientFigureExtractor = FigureExtractor.ClientFigureExtractor; + const GRAPH = ['Graph']; + const SUBGRAPHS = ['Plot2D', 'Plot3D']; var ExecutionIndexControl; @@ -247,8 +249,6 @@ define([ type; if (node) { - const graphNode = this.figureExtractor.getGraphNode(node), - isGraphOrChildren = !!graphNode; base = this._client.getNode(node.getBaseId()); type = base.getAttribute('name'); desc = { @@ -257,6 +257,8 @@ define([ name: node.getAttribute('name') }; + const isGraphOrChildren = GRAPH.concat(SUBGRAPHS).includes(type); + if (type === 'Execution') { desc.status = node.getAttribute('status'); desc.originTime = node.getAttribute('createdAt'); @@ -277,6 +279,10 @@ define([ desc.execs = node.getMemberIds('executions'); this._pipelineNames[desc.id] = desc.name; } else if (isGraphOrChildren) { + let graphNode = node; + if (SUBGRAPHS.includes(type)){ + graphNode = this._client.getNode(node.getParentId()); + } desc = this.getGraphDesc(graphNode); } } @@ -285,8 +291,7 @@ define([ ExecutionIndexControl.prototype.getGraphDesc = function (graphNode) { let id = graphNode.getId(); - const graphInfo = this.figureExtractor.GMENodeToMetadataJSON(graphNode); - let desc = this.figureExtractor.extract(graphInfo); + let desc = this.figureExtractor.extract(graphNode); if (!this._graphToExec[id]) { this._graphsForExecution[desc.execId] = id; diff --git a/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js b/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js index c7be04a0c..38ad02a14 100644 --- a/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js +++ b/src/visualizers/panels/PlotlyGraph/PlotlyGraphControl.js @@ -10,6 +10,8 @@ define([ 'use strict'; const ClientFigureExtractor = FigureExtractor.ClientFigureExtractor; + const GRAPH = ['Graph']; + const SUBGRAPHS = ['Plot2D', 'Plot3D']; function PlotlyGraphControl(options) { @@ -66,15 +68,18 @@ define([ // This next function retrieves the relevant node information for the widget PlotlyGraphControl.prototype._getObjectDescriptor = function (nodeId) { let node = this._client.getNode(nodeId), - desc, graphNode, hasGraph; + desc, graphNode; if(node) { - graphNode = this.figureExtractor.getGraphNode(node); - hasGraph = !!graphNode; - } - if(hasGraph){ - const graphInfo = this.figureExtractor.GMENodeToMetadataJSON(graphNode); - console.log(graphInfo); - desc = this.figureExtractor.extract(graphInfo); + const baseNode = this._client.getNode(node.getBaseId()); + const type = baseNode.getAttribute('name'); + const isGraph = GRAPH.concat(SUBGRAPHS).includes(type); + if(isGraph){ + graphNode = node; + if (SUBGRAPHS.includes(type)) { + graphNode = this._client.getNode(node.getParentId()); + } + desc = this.figureExtractor.extract(graphNode); + } } return desc; }; diff --git a/test/unit/common/viz/FigureExtractor.spec.js b/test/unit/common/viz/FigureExtractor.spec.js index 63e5bae1c..50e894ea7 100644 --- a/test/unit/common/viz/FigureExtractor.spec.js +++ b/test/unit/common/viz/FigureExtractor.spec.js @@ -39,10 +39,9 @@ describe('FigureExtractor', function() { it('should convert graphNode to JSON', async () => { const graphNode = await core.loadByPath(rootNode, GRAPH_NODE_PATH); const figureExtractor = new FigureExtractor(core, graphNode); - assert(figureExtractor.getMetaType(graphNode) === 'Graph'); - const exportedJSON = (await figureExtractor.GMENodeToMetadataJSON(graphNode)); + const exportedJSON = (await figureExtractor.toJSON(graphNode)); const referenceJSON = JSON.parse(fs.readFileSync(REFERENCE_JSON)); - assert.deepEqual(exportedJSON, referenceJSON); + assert.deepStrictEqual(exportedJSON, referenceJSON); }); after(async function () { diff --git a/test/unit/common/viz/FigureReference.json b/test/unit/common/viz/FigureReference.json index cada5d72a..411a38a75 100644 --- a/test/unit/common/viz/FigureReference.json +++ b/test/unit/common/viz/FigureReference.json @@ -1,19 +1,12 @@ { "id": "/K/n/d/2", - "parent_id": "/K/n/d", - "execution_id": "/K/n", - "meta_type": "Graph", "attributes": { "id": 1, "title": "" }, - "attributes_meta": {}, "children": [ { "id": "/K/n/d/2/L", - "parent_id": "/K/n/d/2", - "execution_id": "/K/n", - "meta_type": "Plot2D", "attributes": { "title": "Axis [0,0]", "xlabel": "x-label", @@ -27,13 +20,9 @@ 1.099994904020213 ] }, - "attributes_meta": {}, "children": [ { "id": "/K/n/d/2/L/U", - "parent_id": "/K/n/d/2/L", - "execution_id": "/K/n", - "meta_type": "Line", "attributes": { "color": "#1f77b4", "label": "line 1", @@ -42,16 +31,1477 @@ "points": 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"attributes": { + "name": "FCO" + }, + "parent": { + "id": "/9", + "attributes": { + "version": "0.21.1", + "name": "pipeline" + }, + "parent": { + "id": "", + "attributes": { + "name": "HOME" + }, + "parent": null, + "base": null + }, + "base": null + }, + "base": { + "id": "/1", + "attributes": { + "name": "FCO" + }, + "parent": { + "id": "", + "attributes": { + "name": "HOME" + }, + "parent": null, + "base": null + }, + "base": null } - ] + } } - ] + } } From 8eca9ed9c60fc0267525a9b1d44cce0a7c580e16 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Thu, 16 Jul 2020 12:20:39 -0500 Subject: [PATCH 4/9] Test generated desc instead of JSON nodes in FigureExtractor.spec 1. Fix nodejs btoa function unavailability 2. Change FigureReference.json to a single line 3. Refactor extract method to both client/core FigureExtractor --- src/common/viz/FigureExtractor.js | 17 +- src/common/viz/Utils.js | 11 +- test/unit/common/viz/FigureExtractor.spec.js | 2 +- test/unit/common/viz/FigureReference.json | 7491 +----------------- 4 files changed, 22 insertions(+), 7499 deletions(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index 4999e7d20..f32eca078 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -28,11 +28,6 @@ define(['./Utils'], function (Utils) { class AbstractFigureExtractor { - extract(node) { - const nodeInfo = this.toJSON(node); - return this._extract(nodeInfo); - } - _extract (nodeInfo) { const extractorFn = this.getMetaType(nodeInfo); ensureCanExtract(extractorFn); @@ -162,7 +157,7 @@ define(['./Utils'], function (Utils) { desc = { id: id, execId: execId, - subgraphId: nodeInfo.parent_id, + subgraphId: nodeInfo.parent.id, marker: nodeInfo.attributes.marker, name: nodeInfo.attributes.name, type: 'scatterPoints', @@ -206,6 +201,11 @@ define(['./Utils'], function (Utils) { this._client = client; } + extract(node) { + const nodeInfo = this.toJSON(node); + return this._extract(nodeInfo); + } + getMetadataChildrenIds (node) { const allMetaNodes = this._client.getAllMetaNodes(); const metadataBaseNode = allMetaNodes @@ -254,6 +254,11 @@ define(['./Utils'], function (Utils) { this._rootNode = rootNode; } + async extract (node) { + const nodeInfo = await this.toJSON(node); + return this._extract(nodeInfo); + } + async getMetadataChildren (node) { const children = await this._core.loadChildren(node); const allMetaNodes = this._core.getAllMetaNodes(this._rootNode); diff --git a/src/common/viz/Utils.js b/src/common/viz/Utils.js index 7541ad847..c7aaf3c56 100644 --- a/src/common/viz/Utils.js +++ b/src/common/viz/Utils.js @@ -21,8 +21,15 @@ define([], function(){ }; Utils.base64ToImageArray = function (base64String, width, height, numChannels) { - const decodedString = atob(base64String); - let bytes = new Uint8Array(decodedString.length); + let decodedString, bytes; + if(require.isBrowser) { + decodedString = atob(base64String); + bytes = new Uint8Array(decodedString.length); + } else { + decodedString = Buffer.from(base64String, 'base64').toString('binary'); + bytes = new Buffer.alloc(decodedString.length); + } + for (let i = 0; i < decodedString.length; i++) { bytes[i] = decodedString.charCodeAt(i); } diff --git a/test/unit/common/viz/FigureExtractor.spec.js b/test/unit/common/viz/FigureExtractor.spec.js index 50e894ea7..fc74457b2 100644 --- a/test/unit/common/viz/FigureExtractor.spec.js +++ b/test/unit/common/viz/FigureExtractor.spec.js @@ -39,7 +39,7 @@ describe('FigureExtractor', function() { it('should convert graphNode to JSON', async () => { const graphNode = await core.loadByPath(rootNode, GRAPH_NODE_PATH); const figureExtractor = new FigureExtractor(core, graphNode); - const exportedJSON = (await figureExtractor.toJSON(graphNode)); + const exportedJSON = JSON.parse(JSON.stringify(await figureExtractor.extract(graphNode))); const referenceJSON = JSON.parse(fs.readFileSync(REFERENCE_JSON)); assert.deepStrictEqual(exportedJSON, referenceJSON); }); diff --git a/test/unit/common/viz/FigureReference.json b/test/unit/common/viz/FigureReference.json index 411a38a75..af4faa915 100644 --- a/test/unit/common/viz/FigureReference.json +++ b/test/unit/common/viz/FigureReference.json @@ -1,7490 +1 @@ -{ - "id": "/K/n/d/2", - "attributes": { - "id": 1, - "title": "" - }, - "children": [ - { - "id": "/K/n/d/2/L", - "attributes": { - "title": "Axis [0,0]", - "xlabel": "x-label", - "ylabel": "y-label", - "xlim": [ - -0.3141592653589793, - 6.5973445725385655 - ], - "ylim": [ - -1.099989860936727, - 1.099994904020213 - ] - }, - "children": [ - { - "id": "/K/n/d/2/L/U", - "attributes": { - "color": "#1f77b4", - "label": "line 1", - "lineStyle": "-", - "marker": "", - "points": 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From 6356ffc5a7c49fb72b7a60b89979618e31caf993 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Thu, 16 Jul 2020 13:16:28 -0500 Subject: [PATCH 5/9] WIP- refactor toJSON method in FigureExtractor --- src/common/viz/FigureExtractor.js | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index f32eca078..559270645 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -230,6 +230,9 @@ define(['./Utils'], function (Utils) { id: node.getId(), attributes: {}, }; + + cache[node.getId()] = json; + node.getOwnAttributeNames().forEach(name => { json.attributes[name] = node.getAttribute(name); }); @@ -242,7 +245,6 @@ define(['./Utils'], function (Utils) { } json.parent = parentNode ? this.toJSON(parentNode, true, cache): null; json.base = baseNode ? this.toJSON(baseNode, true, cache): null; - cache[node.getId()] = json; return json; } } @@ -272,19 +274,25 @@ define(['./Utils'], function (Utils) { } ); } + async toJSON (node, shallow=false, cache={}) { + if (cache[this._core.getPath(node)]) { + return cache[this._core.getPath(node)]; + } + const parentNode = this._core.getParent(node); + const baseNode = this._core.getBase(node); + const json = { id: this._core.getPath(node), attributes: {}, }; + cache[this._core.getPath(node)] = json; + this._core.getOwnAttributeNames(node).forEach(name => { json.attributes[name] = this._core.getAttribute(node, name); }); - const parentNode = this._core.getParent(node); - const baseNode = this._core.getBase(node); - if(!shallow) { json.children = []; const children = await this.getMetadataChildren(node); @@ -294,7 +302,6 @@ define(['./Utils'], function (Utils) { } json.parent = parentNode ? await this.toJSON(parentNode, true, cache): null; json.base = baseNode ? await this.toJSON(baseNode, true, cache): null; - cache[this._core.getPath(node)] = json; return json; } } From 609e1d56b8490933e0de5baf1ce97808d684bc54 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Thu, 16 Jul 2020 13:19:25 -0500 Subject: [PATCH 6/9] WIP- fix error message for toJSON method in AbstractFigureExtractor --- src/common/viz/FigureExtractor.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index 559270645..a9d0788c2 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -191,7 +191,7 @@ define(['./Utils'], function (Utils) { } toJSON (/* node, shallow=false */) { - throw new Error('GMENodeTOMetadataJSON is not implemented'); + throw new Error('toJSON is not implemented'); } } From ec0f7124f301543c2248474275d45d363b3ccdee Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Fri, 17 Jul 2020 12:06:34 -0500 Subject: [PATCH 7/9] WIP- add cache in parameters list for AbstractFigureExtractor --- src/common/viz/FigureExtractor.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index a9d0788c2..1658a7060 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -190,7 +190,7 @@ define(['./Utils'], function (Utils) { } } - toJSON (/* node, shallow=false */) { + toJSON (/* node, shallow=false, cache={} */) { throw new Error('toJSON is not implemented'); } } From c00efca1504464c451249b63df67b59f74387199 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Fri, 17 Jul 2020 15:15:35 -0500 Subject: [PATCH 8/9] Add toJSON parent/child relation test --- test/unit/common/viz/FigureExtractor.spec.js | 17 ++++++++++++++--- 1 file changed, 14 insertions(+), 3 deletions(-) diff --git a/test/unit/common/viz/FigureExtractor.spec.js b/test/unit/common/viz/FigureExtractor.spec.js index fc74457b2..2da8431b6 100644 --- a/test/unit/common/viz/FigureExtractor.spec.js +++ b/test/unit/common/viz/FigureExtractor.spec.js @@ -13,7 +13,9 @@ describe('FigureExtractor', function() { storage, commitHash, rootNode, - core; + core, + graphNode, + figureExtractor; before(async function () { const projectName = 'testProject'; @@ -34,11 +36,20 @@ describe('FigureExtractor', function() { core = importResult.core; rootNode = importResult.rootNode; await project.createBranch('test', commitHash); + graphNode = await core.loadByPath(rootNode, GRAPH_NODE_PATH); + figureExtractor = new FigureExtractor(core, graphNode); }); it('should convert graphNode to JSON', async () => { - const graphNode = await core.loadByPath(rootNode, GRAPH_NODE_PATH); - const figureExtractor = new FigureExtractor(core, graphNode); + const graphNodeJSON = await figureExtractor.toJSON(graphNode); + graphNodeJSON.children.forEach(child => { + assert.equal(child.parent.id, graphNodeJSON.id); + assert.deepStrictEqual(child.parent.attributes, graphNodeJSON.attributes); + assert.deepStrictEqual(child.parent.base, graphNodeJSON.base); + }); + }); + + it('should convert graphNode to desc', async () => { const exportedJSON = JSON.parse(JSON.stringify(await figureExtractor.extract(graphNode))); const referenceJSON = JSON.parse(fs.readFileSync(REFERENCE_JSON)); assert.deepStrictEqual(exportedJSON, referenceJSON); From 669b7087739ec3621a07eb8770a46fbe2c3b8b67 Mon Sep 17 00:00:00 2001 From: Umesh Timalsina Date: Fri, 17 Jul 2020 16:32:55 -0500 Subject: [PATCH 9/9] WIP-Add cache in children.toJSON in CoreFigureExtractor Also, add test to check equality of objects --- src/common/viz/FigureExtractor.js | 2 +- test/unit/common/viz/FigureExtractor.spec.js | 4 +--- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/src/common/viz/FigureExtractor.js b/src/common/viz/FigureExtractor.js index 1658a7060..aa4dcc61b 100644 --- a/src/common/viz/FigureExtractor.js +++ b/src/common/viz/FigureExtractor.js @@ -297,7 +297,7 @@ define(['./Utils'], function (Utils) { json.children = []; const children = await this.getMetadataChildren(node); for (let i = 0; i < children.length; i++) { - json.children.push(await this.toJSON(children[i])); + json.children.push(await this.toJSON(children[i], false, cache)); } } json.parent = parentNode ? await this.toJSON(parentNode, true, cache): null; diff --git a/test/unit/common/viz/FigureExtractor.spec.js b/test/unit/common/viz/FigureExtractor.spec.js index 2da8431b6..8b25b0aba 100644 --- a/test/unit/common/viz/FigureExtractor.spec.js +++ b/test/unit/common/viz/FigureExtractor.spec.js @@ -43,9 +43,7 @@ describe('FigureExtractor', function() { it('should convert graphNode to JSON', async () => { const graphNodeJSON = await figureExtractor.toJSON(graphNode); graphNodeJSON.children.forEach(child => { - assert.equal(child.parent.id, graphNodeJSON.id); - assert.deepStrictEqual(child.parent.attributes, graphNodeJSON.attributes); - assert.deepStrictEqual(child.parent.base, graphNodeJSON.base); + assert(graphNodeJSON === child.parent); }); });