From 78471cca5c5545c173651e62fc6f347db0cee7eb Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 9 Sep 2024 15:19:59 +0200
Subject: [PATCH 01/81] sentry update

---
 desci-server/.gitignore    |   3 +
 desci-server/package.json  |  10 +-
 desci-server/src/server.ts |   4 +-
 desci-server/tsconfig.json |  14 +-
 desci-server/yarn.lock     | 506 ++++++++++++++++++++++++++++++++++---
 5 files changed, 488 insertions(+), 49 deletions(-)

diff --git a/desci-server/.gitignore b/desci-server/.gitignore
index e9b57f85c..358616150 100755
--- a/desci-server/.gitignore
+++ b/desci-server/.gitignore
@@ -16,3 +16,6 @@ server.log
 repo-tmp
 
 queries.sql
+
+# Sentry Config File
+.sentryclirc
diff --git a/desci-server/package.json b/desci-server/package.json
index 7db90e069..9735e4a81 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -25,7 +25,7 @@
     "script:seed-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-social-data.ts",
     "script:DESTRUCTIVE-clear-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/DESTRUCTIVE-clear-social-data.ts",
     "script:seed-community-member": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-community-members.ts",
-    "build": "rimraf dist && tsc && yarn copy-files",
+    "build": "rimraf dist && tsc && yarn copy-files && yarn sentry:sourcemaps",
     "copy-files": "copyfiles -u 1 src/**/*.cjs dist/",
     "generate": "npx prisma generate",
     "migrate:local": "DATABASE_URL=postgresql://walter:white@localhost:5433/boilerplate npx prisma migrate dev",
@@ -50,7 +50,8 @@
     "docker:prod": "../dockerProd.sh",
     "podman:dev": "podman-compose --file docker-compose.yml --file docker-compose.dev.yml up --build",
     "email-dev": "email dev --dir ./src/templates/emails --port 3777",
-    "check-deps": "npx npm-check"
+    "check-deps": "npx npm-check",
+    "sentry:sourcemaps": "sentry-cli sourcemaps inject --org desci-labs --project nodes-backend ./dist && sentry-cli sourcemaps upload --org desci-labs --project nodes-backend ./dist"
   },
   "dependencies": {
     "@automerge/automerge-repo": "^1.0.19",
@@ -68,7 +69,8 @@
     "@prisma/client": "4.10.1",
     "@react-email/components": "0.0.15",
     "@sendgrid/mail": "^7.7.0",
-    "@sentry/node": "^7.12.0",
+    "@sentry/cli": "^2.35.0",
+    "@sentry/node": "^8.29.0",
     "@sentry/tracing": "^7.12.0",
     "@types/lodash-es": "^4.17.12",
     "@types/mkdirp": "^1.0.2",
@@ -182,4 +184,4 @@
   "prisma": {
     "seed": "node --no-warnings=ExperimentalWarning --loader ts-node/esm prisma/seed.ts"
   }
-}
+}
\ No newline at end of file
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 392fecc1a..a84f90f26 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -230,9 +230,7 @@ class AppServer {
         // We recommend adjusting this value in production
         tracesSampleRate: 1.0,
       });
-      this.app.use(Sentry.Handlers.requestHandler());
-      this.app.use(Sentry.Handlers.tracingHandler());
-      this.app.use(Sentry.Handlers.errorHandler());
+      Sentry.setupExpressErrorHandler(this.app);
     } else {
       logger.info('[DeSci Nodes] Telemetry disabled');
     }
diff --git a/desci-server/tsconfig.json b/desci-server/tsconfig.json
index 6b32eb774..c0d0c4e60 100755
--- a/desci-server/tsconfig.json
+++ b/desci-server/tsconfig.json
@@ -13,6 +13,7 @@
     // "verbatimModuleSyntax": true,
 
     "lib": ["esnext", "dom"],
+
     "outDir": "./dist",
     "removeComments": true,
     "emitDecoratorMetadata": true,
@@ -21,14 +22,23 @@
     "noImplicitReturns": true,
     "noFallthroughCasesInSwitch": true,
     "skipLibCheck": true,
+
     // dagConcat.cjs requires this
     "allowJs": true,
-    "inlineSourceMap": true,
+
     "paths": {
       // Overrides a built-in Response type
       "express": ["./src/types/express"]
     },
-    "jsx": "react"
+
+    "jsx": "react",
+    "sourceMap": true,
+    "inlineSources": true,
+
+    // Set `sourceRoot` to  "/" to strip the build path prefix
+    // from generated source code references.
+    // This improves issue grouping in Sentry.
+    "sourceRoot": "/"
   },
   "include": ["./src/**/*.tsx", "./src/**/*.ts", "./src/**/*.cjs", "src/utils/dagConcat.ts"],
   "exclude": ["test/**/*.ts"],
diff --git a/desci-server/yarn.lock b/desci-server/yarn.lock
index 0385be942..9909ed205 100644
--- a/desci-server/yarn.lock
+++ b/desci-server/yarn.lock
@@ -3605,7 +3605,21 @@
   dependencies:
     "@opentelemetry/api" "^1.0.0"
 
-"@opentelemetry/api@1.x":
+"@opentelemetry/api-logs@0.52.1":
+  version "0.52.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.52.1.tgz#52906375da4d64c206b0c4cb8ffa209214654ecc"
+  integrity sha512-qnSqB2DQ9TPP96dl8cDubDvrUyWc0/sK81xHTK8eSUspzDM3bsewX903qclQFvVhgStjRWdC5bLb3kQqMkfV5A==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api-logs@0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.53.0.tgz#c478cbd8120ec2547b64edfa03a552cfe42170be"
+  integrity sha512-8HArjKx+RaAI8uEIgcORbZIPklyh1YLjPSBus8hjRmvLi6DeFzgOcdZ7KwPabKj8mXF8dX0hyfAyGfycz0DbFw==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api@1.x", "@opentelemetry/api@^1.8", "@opentelemetry/api@^1.9.0":
   version "1.9.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/api/-/api-1.9.0.tgz#d03eba68273dc0f7509e2a3d5cba21eae10379fe"
   integrity sha512-3giAOQvZiH5F9bMlMiv8+GSPMeqg0dbaeo58/0SlA9sxSqZhnUtxzX9/2FzyhS9sWQf5S0GJE0AKBrFqjpeYcg==
@@ -3674,6 +3688,11 @@
   resolved "https://registry.yarnpkg.com/@opentelemetry/context-async-hooks/-/context-async-hooks-1.8.0.tgz#6141ff59f7c07fac8eda3f9f208b6aaf06893471"
   integrity sha512-ueLmocbWDi1aoU4IPdOQyt4qz/Dx+NYyU4qoa3d683usbnkDLUXYXJFfKIMPFV2BbrI5qtnpTtzErCKewoM8aw==
 
+"@opentelemetry/context-async-hooks@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/context-async-hooks/-/context-async-hooks-1.26.0.tgz#fa92f722cf685685334bba95f258d3ef9fce60f6"
+  integrity sha512-HedpXXYzzbaoutw6DFLWLDket2FwLkLpil4hGCZ1xYEIMTcivdfwEOISgdbLEWyG3HW52gTq2V9mOVJrONgiwg==
+
 "@opentelemetry/core@1.14.0":
   version "1.14.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/core/-/core-1.14.0.tgz#64e876b29cb736c984d54164cd47433f513eafd3"
@@ -3702,6 +3721,13 @@
   dependencies:
     "@opentelemetry/semantic-conventions" "1.25.0"
 
+"@opentelemetry/core@1.26.0", "@opentelemetry/core@^1.1.0", "@opentelemetry/core@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/core/-/core-1.26.0.tgz#7d84265aaa850ed0ca5813f97d831155be42b328"
+  integrity sha512-1iKxXXE8415Cdv0yjG3G6hQnB5eVEsJce3QaawX8SjDn0mAS0ZM8fAbZZJD4ajvhC15cePvosSCut404KrIIvQ==
+  dependencies:
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
 "@opentelemetry/core@1.8.0":
   version "1.8.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/core/-/core-1.8.0.tgz#cca18594dd48ded6dc0d08c7e789c79af0315934"
@@ -3933,6 +3959,16 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-connect@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-connect/-/instrumentation-connect-0.39.0.tgz#32bdbaac464cba061c95df6c850ee81efdd86f8b"
+  integrity sha512-pGBiKevLq7NNglMgqzmeKczF4XQMTOUOTkK8afRHMZMnrK3fcETyTH7lVaSozwiOM3Ws+SuEmXZT7DYrrhxGlg==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@types/connect" "3.4.36"
+
 "@opentelemetry/instrumentation-connect@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-connect/-/instrumentation-connect-0.31.4.tgz#c1693d26f103dc133cb6a9708cc9ed2fda288a52"
@@ -3959,6 +3995,15 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     semver "^7.3.2"
 
+"@opentelemetry/instrumentation-express@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-express/-/instrumentation-express-0.42.0.tgz#279f195aa66baee2b98623a16666c6229c8e7564"
+  integrity sha512-YNcy7ZfGnLsVEqGXQPT+S0G1AE46N21ORY7i7yUQyfhGAL4RBjnZUqefMI0NwqIl6nGbr1IpF0rZGoN8Q7x12Q==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-express@^0.32.4":
   version "0.32.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-express/-/instrumentation-express-0.32.4.tgz#bced338cc6c2a5aeb3433f12302c0460207c7090"
@@ -3969,6 +4014,15 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/express" "4.17.13"
 
+"@opentelemetry/instrumentation-fastify@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fastify/-/instrumentation-fastify-0.39.0.tgz#96a040e4944daf77c53a8fe5a128bc3b2568e4aa"
+  integrity sha512-SS9uSlKcsWZabhBp2szErkeuuBDgxOUlllwkS92dVaWRnMmwysPhcEgHKB8rUe3BHg/GnZC1eo1hbTZv4YhfoA==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-fastify@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fastify/-/instrumentation-fastify-0.31.4.tgz#d3a17a190ba0b258330423982f7437c66e8f2b70"
@@ -3978,6 +4032,14 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-fs@0.15.0":
+  version "0.15.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fs/-/instrumentation-fs-0.15.0.tgz#41658507860f39fee5209bca961cea8d24ca2a83"
+  integrity sha512-JWVKdNLpu1skqZQA//jKOcKdJC66TWKqa2FUFq70rKohvaSq47pmXlnabNO+B/BvLfmidfiaN35XakT5RyMl2Q==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+
 "@opentelemetry/instrumentation-fs@^0.7.4":
   version "0.7.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fs/-/instrumentation-fs-0.7.4.tgz#28a15842fc9b8d373f87c7fbf560049717f58156"
@@ -3987,6 +4049,13 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-generic-pool@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-generic-pool/-/instrumentation-generic-pool-0.39.0.tgz#2b9af16ad82d5cbe67125c0125753cecd162a728"
+  integrity sha512-y4v8Y+tSfRB3NNBvHjbjrn7rX/7sdARG7FuK6zR8PGb28CTa0kHpEGCJqvL9L8xkTNvTXo+lM36ajFGUaK1aNw==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
 "@opentelemetry/instrumentation-generic-pool@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-generic-pool/-/instrumentation-generic-pool-0.31.4.tgz#049efa886f666c9e21cf0f32c06ef45642cbf992"
@@ -3996,6 +4065,13 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/generic-pool" "^3.1.9"
 
+"@opentelemetry/instrumentation-graphql@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-graphql/-/instrumentation-graphql-0.43.0.tgz#71bb94ea775c70dbd388c739b397ec1418f3f170"
+  integrity sha512-aI3YMmC2McGd8KW5du1a2gBA0iOMOGLqg4s9YjzwbjFwjlmMNFSK1P3AIg374GWg823RPUGfVTIgZ/juk9CVOA==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
 "@opentelemetry/instrumentation-graphql@^0.34.3":
   version "0.34.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-graphql/-/instrumentation-graphql-0.34.3.tgz#f55cb9223f616a27c8fa4303ee8c8b8f64059ddd"
@@ -4011,6 +4087,15 @@
     "@opentelemetry/instrumentation" "0.40.0"
     "@opentelemetry/semantic-conventions" "1.14.0"
 
+"@opentelemetry/instrumentation-hapi@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-hapi/-/instrumentation-hapi-0.41.0.tgz#de8711907256d8fae1b5faf71fc825cef4a7ddbb"
+  integrity sha512-jKDrxPNXDByPlYcMdZjNPYCvw0SQJjN+B1A+QH+sx+sAHsKSAf9hwFiJSrI6C4XdOls43V/f/fkp9ITkHhKFbQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-hapi@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-hapi/-/instrumentation-hapi-0.31.4.tgz#df54ed4d36618f5adff0235bd95e68ae0da7ecd0"
@@ -4021,6 +4106,16 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/hapi__hapi" "20.0.9"
 
+"@opentelemetry/instrumentation-http@0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-http/-/instrumentation-http-0.53.0.tgz#0d806adf1b3aba036bc46e16162e3c0dbb8a6b60"
+  integrity sha512-H74ErMeDuZfj7KgYCTOFGWF5W9AfaPnqLQQxeFq85+D29wwV2yqHbz2IKLYpkOh7EI6QwDEl7rZCIxjJLyc/CQ==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/instrumentation" "0.53.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+    semver "^7.5.2"
+
 "@opentelemetry/instrumentation-http@^0.40.0":
   version "0.40.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-http/-/instrumentation-http-0.40.0.tgz#ed4206ea96d64b5fd83b796f027642e42dca0cd1"
@@ -4031,6 +4126,15 @@
     "@opentelemetry/semantic-conventions" "1.14.0"
     semver "^7.3.5"
 
+"@opentelemetry/instrumentation-ioredis@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-ioredis/-/instrumentation-ioredis-0.43.0.tgz#dbadabaeefc4cb47c406f878444f1bcac774fa89"
+  integrity sha512-i3Dke/LdhZbiUAEImmRG3i7Dimm/BD7t8pDDzwepSvIQ6s2X6FPia7561gw+64w+nx0+G9X14D7rEfaMEmmjig==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/redis-common" "^0.36.2"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-ioredis@^0.34.3":
   version "0.34.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-ioredis/-/instrumentation-ioredis-0.34.3.tgz#95fb4b6ff2b5eb29e01ee8d36ec24c69f2996019"
@@ -4049,6 +4153,15 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-koa@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-koa/-/instrumentation-koa-0.43.0.tgz#963fd192a1b5f6cbae5dabf4ec82e3105cbb23b1"
+  integrity sha512-lDAhSnmoTIN6ELKmLJBplXzT/Jqs5jGZehuG22EdSMaTwgjMpxMDI1YtlKEhiWPWkrz5LUsd0aOO0ZRc9vn3AQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-koa@^0.34.6":
   version "0.34.6"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-koa/-/instrumentation-koa-0.34.6.tgz#88f2ab16f94f7c41bcd4b3487c254f9374a438c1"
@@ -4076,6 +4189,15 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/memcached" "^2.2.6"
 
+"@opentelemetry/instrumentation-mongodb@0.47.0":
+  version "0.47.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongodb/-/instrumentation-mongodb-0.47.0.tgz#f8107d878281433905e717f223fb4c0f10356a7b"
+  integrity sha512-yqyXRx2SulEURjgOQyJzhCECSh5i1uM49NUaq9TqLd6fA7g26OahyJfsr9NE38HFqGRHpi4loyrnfYGdrsoVjQ==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/sdk-metrics" "^1.9.1"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-mongodb@^0.35.0":
   version "0.35.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongodb/-/instrumentation-mongodb-0.35.0.tgz#6ec571ef1c2ad8c88724ace826fdaf060dc8076a"
@@ -4085,6 +4207,15 @@
     "@opentelemetry/sdk-metrics" "^1.9.1"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-mongoose@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongoose/-/instrumentation-mongoose-0.42.0.tgz#375afd21adfcd897a8f521c1ffd2d91e6a428705"
+  integrity sha512-AnWv+RaR86uG3qNEMwt3plKX1ueRM7AspfszJYVkvkehiicC3bHQA6vWdb6Zvy5HAE14RyFbu9+2hUUjR2NSyg==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-mongoose@^0.32.4":
   version "0.32.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongoose/-/instrumentation-mongoose-0.32.4.tgz#f421d477264abd46e66d78ac65ca59f98c39b07c"
@@ -4094,6 +4225,15 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-mysql2@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql2/-/instrumentation-mysql2-0.41.0.tgz#6377b6e2d2487fd88e1d79aa03658db6c8d51651"
+  integrity sha512-REQB0x+IzVTpoNgVmy5b+UnH1/mDByrneimP6sbDHkp1j8QOl1HyWOrBH/6YWR0nrbU3l825Em5PlybjT3232g==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@opentelemetry/sql-common" "^0.40.1"
+
 "@opentelemetry/instrumentation-mysql2@^0.33.4":
   version "0.33.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql2/-/instrumentation-mysql2-0.33.4.tgz#fd69e38d1b5eefff6e4362fc257e60c5bec5a10f"
@@ -4102,6 +4242,15 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-mysql@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql/-/instrumentation-mysql-0.41.0.tgz#2d50691ead5219774bd36d66c35d5b4681485dd7"
+  integrity sha512-jnvrV6BsQWyHS2qb2fkfbfSb1R/lmYwqEZITwufuRl37apTopswu9izc0b1CYRp/34tUG/4k/V39PND6eyiNvw==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@types/mysql" "2.15.26"
+
 "@opentelemetry/instrumentation-mysql@^0.33.3":
   version "0.33.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql/-/instrumentation-mysql-0.33.3.tgz#1f09c9cd19d971c2d5f142bb83c35f25c72975d9"
@@ -4111,6 +4260,14 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/mysql" "2.15.19"
 
+"@opentelemetry/instrumentation-nestjs-core@0.40.0":
+  version "0.40.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-nestjs-core/-/instrumentation-nestjs-core-0.40.0.tgz#2c0e6405b56caaec32747d55c57ff9a034668ea8"
+  integrity sha512-WF1hCUed07vKmf5BzEkL0wSPinqJgH7kGzOjjMAiTGacofNXjb/y4KQ8loj2sNsh5C/NN7s1zxQuCgbWbVTGKg==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-nestjs-core@^0.32.5":
   version "0.32.5"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-nestjs-core/-/instrumentation-nestjs-core-0.32.5.tgz#ed4f81651f141a298b3a8d6107f50bc47b66004b"
@@ -4127,6 +4284,17 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-pg@0.44.0":
+  version "0.44.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-pg/-/instrumentation-pg-0.44.0.tgz#1e97a0aeb2dca068ee23ce75884a0a0063a7ce3f"
+  integrity sha512-oTWVyzKqXud1BYEGX1loo2o4k4vaU1elr3vPO8NZolrBtFvQ34nx4HgUaexUDuEog00qQt+MLR5gws/p+JXMLQ==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@opentelemetry/sql-common" "^0.40.1"
+    "@types/pg" "8.6.1"
+    "@types/pg-pool" "2.0.6"
+
 "@opentelemetry/instrumentation-pg@^0.35.3":
   version "0.35.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-pg/-/instrumentation-pg-0.35.3.tgz#47b29891e2be797a2148e699bb43094fdf33a281"
@@ -4145,6 +4313,15 @@
   dependencies:
     "@opentelemetry/instrumentation" "^0.40.0"
 
+"@opentelemetry/instrumentation-redis-4@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-redis-4/-/instrumentation-redis-4-0.42.0.tgz#fc01104cfe884c7546385eaae03c57a47edd19d1"
+  integrity sha512-NaD+t2JNcOzX/Qa7kMy68JbmoVIV37fT/fJYzLKu2Wwd+0NCxt+K2OOsOakA8GVg8lSpFdbx4V/suzZZ2Pvdjg==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/redis-common" "^0.36.2"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-redis-4@^0.34.6":
   version "0.34.6"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-redis-4/-/instrumentation-redis-4-0.34.6.tgz#2503f33b60f2cbe3311558fc95037d348e020575"
@@ -4224,6 +4401,41 @@
     semver "^7.3.2"
     shimmer "^1.2.1"
 
+"@opentelemetry/instrumentation@0.53.0", "@opentelemetry/instrumentation@^0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.53.0.tgz#e6369e4015eb5112468a4d45d38dcada7dad892d"
+  integrity sha512-DMwg0hy4wzf7K73JJtl95m/e0boSoWhH07rfvHvYzQtBD3Bmv0Wc1x733vyZBqmFm8OjJD0/pfiUg1W3JjFX0A==
+  dependencies:
+    "@opentelemetry/api-logs" "0.53.0"
+    "@types/shimmer" "^1.2.0"
+    import-in-the-middle "^1.8.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
+"@opentelemetry/instrumentation@^0.46.0":
+  version "0.46.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.46.0.tgz#a8a252306f82e2eace489312798592a14eb9830e"
+  integrity sha512-a9TijXZZbk0vI5TGLZl+0kxyFfrXHhX6Svtz7Pp2/VBlCSKrazuULEyoJQrOknJyFWNMEmbbJgOciHCCpQcisw==
+  dependencies:
+    "@types/shimmer" "^1.0.2"
+    import-in-the-middle "1.7.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
+"@opentelemetry/instrumentation@^0.49 || ^0.50 || ^0.51 || ^0.52.0":
+  version "0.52.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.52.1.tgz#2e7e46a38bd7afbf03cf688c862b0b43418b7f48"
+  integrity sha512-uXJbYU/5/MBHjMp1FqrILLRuiJCs3Ofk0MeRDk8g1S1gD47U8X3JnSwcMO1rtRo1x1a7zKaQHaoYu49p/4eSKw==
+  dependencies:
+    "@opentelemetry/api-logs" "0.52.1"
+    "@types/shimmer" "^1.0.2"
+    import-in-the-middle "^1.8.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
 "@opentelemetry/otlp-exporter-base@0.34.0":
   version "0.34.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/otlp-exporter-base/-/otlp-exporter-base-0.34.0.tgz#c6020b63590d4b8ac3833eda345a6f582fa014b1"
@@ -4362,6 +4574,11 @@
   resolved "https://registry.yarnpkg.com/@opentelemetry/redis-common/-/redis-common-0.35.1.tgz#01356f6845d4f9f9fdfd2c4c562a74316d2d24d3"
   integrity sha512-qLXe7h9VzFLx3LaizFiUlpuohCRyvHlDW5b9synE6omHKTZr/n0EHEdmhp3GezBeAqMGI+q499Mht4SmStaSqQ==
 
+"@opentelemetry/redis-common@^0.36.2":
+  version "0.36.2"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/redis-common/-/redis-common-0.36.2.tgz#906ac8e4d804d4109f3ebd5c224ac988276fdc47"
+  integrity sha512-faYX1N0gpLhej/6nyp6bgRjzAKXn5GOEMYY7YhciSfCoITAktLUtQ36d24QEWNA1/WA1y6qQunCe0OhHRkVl9g==
+
 "@opentelemetry/resource-detector-alibaba-cloud@^0.27.7":
   version "0.27.7"
   resolved "https://registry.yarnpkg.com/@opentelemetry/resource-detector-alibaba-cloud/-/resource-detector-alibaba-cloud-0.27.7.tgz#9eccdbf3b70eb891dcbd8f36a8019610ce838254"
@@ -4429,6 +4646,14 @@
     "@opentelemetry/core" "1.25.0"
     "@opentelemetry/semantic-conventions" "1.25.0"
 
+"@opentelemetry/resources@1.26.0", "@opentelemetry/resources@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/resources/-/resources-1.26.0.tgz#da4c7366018bd8add1f3aa9c91c6ac59fd503cef"
+  integrity sha512-CPNYchBE7MBecCSVy0HKpUISEeJOniWqcHaAHpmasZ3j9o6V3AyBzhRc90jdmemq0HOxDr6ylhUbDhBqqPpeNw==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
 "@opentelemetry/resources@1.8.0":
   version "1.8.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/resources/-/resources-1.8.0.tgz#260be9742cf7bceccc0db928d8ca8d64391acfe3"
@@ -4561,6 +4786,15 @@
     "@opentelemetry/resources" "1.8.0"
     "@opentelemetry/semantic-conventions" "1.8.0"
 
+"@opentelemetry/sdk-trace-base@^1.22", "@opentelemetry/sdk-trace-base@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/sdk-trace-base/-/sdk-trace-base-1.26.0.tgz#0c913bc6d2cfafd901de330e4540952269ae579c"
+  integrity sha512-olWQldtvbK4v22ymrKLbIcBi9L2SpMO84sCPY54IVsJhP9fRsxJT194C/AVaAuJzLE30EdhhM1VmvVYR7az+cw==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/resources" "1.26.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
 "@opentelemetry/sdk-trace-base@^1.23.0":
   version "1.25.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/sdk-trace-base/-/sdk-trace-base-1.25.0.tgz#263f9ce19001c5cd7a814d0eb40ebc6469ae763d"
@@ -4623,11 +4857,23 @@
   resolved "https://registry.yarnpkg.com/@opentelemetry/semantic-conventions/-/semantic-conventions-1.25.0.tgz#390eb4d42a29c66bdc30066af9035645e9bb7270"
   integrity sha512-M+kkXKRAIAiAP6qYyesfrC5TOmDpDVtsxuGfPcqd9B/iBrac+E14jYwrgm0yZBUIbIP2OnqC3j+UgkXLm1vxUQ==
 
+"@opentelemetry/semantic-conventions@1.27.0", "@opentelemetry/semantic-conventions@^1.17.0", "@opentelemetry/semantic-conventions@^1.25.1", "@opentelemetry/semantic-conventions@^1.27.0":
+  version "1.27.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/semantic-conventions/-/semantic-conventions-1.27.0.tgz#1a857dcc95a5ab30122e04417148211e6f945e6c"
+  integrity sha512-sAay1RrB+ONOem0OZanAR1ZI/k7yDpnOQSQmTMuGImUQb2y8EbSaCJ94FQluM74xoU03vlb2d2U90hZluL6nQg==
+
 "@opentelemetry/semantic-conventions@1.8.0":
   version "1.8.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/semantic-conventions/-/semantic-conventions-1.8.0.tgz#fe2aa90e6df050a11cd57f5c0f47b0641fd2cad3"
   integrity sha512-TYh1MRcm4JnvpqtqOwT9WYaBYY4KERHdToxs/suDTLviGRsQkIjS5yYROTYTSJQUnYLOn/TuOh5GoMwfLSU+Ew==
 
+"@opentelemetry/sql-common@^0.40.1":
+  version "0.40.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/sql-common/-/sql-common-0.40.1.tgz#93fbc48d8017449f5b3c3274f2268a08af2b83b6"
+  integrity sha512-nSDlnHSqzC3pXn/wZEZVLuAuJ1MYMXPBwtv2qAbCa3847SaHItdE7SzUq/Jtb0KZmh1zfAbNi3AAMjztTT4Ugg==
+  dependencies:
+    "@opentelemetry/core" "^1.1.0"
+
 "@penseapp/discord-notification@^2.0.9":
   version "2.0.9"
   resolved "https://registry.yarnpkg.com/@penseapp/discord-notification/-/discord-notification-2.0.9.tgz#0a52bb2eda2c575e076ee00476fd8dc717023a67"
@@ -4758,6 +5004,15 @@
   resolved "https://registry.yarnpkg.com/@prisma/engines/-/engines-4.10.1.tgz#c7062747f254e5d5fce98a8cae566c25f9f29fb2"
   integrity sha512-B3tcTxjx196nuAu1GOTKO9cGPUgTFHYRdkPkTS4m5ptb2cejyBlH9X7GOfSt3xlI7p4zAJDshJP4JJivCg9ouA==
 
+"@prisma/instrumentation@5.19.1":
+  version "5.19.1"
+  resolved "https://registry.yarnpkg.com/@prisma/instrumentation/-/instrumentation-5.19.1.tgz#146319cf85f22b7a43296f0f40cfeac55516e66e"
+  integrity sha512-VLnzMQq7CWroL5AeaW0Py2huiNKeoMfCH3SUxstdzPrlWQi6UQ9UrfcbUkNHlVFqOMacqy8X/8YtE0kuKDpD9w==
+  dependencies:
+    "@opentelemetry/api" "^1.8"
+    "@opentelemetry/instrumentation" "^0.49 || ^0.50 || ^0.51 || ^0.52.0"
+    "@opentelemetry/sdk-trace-base" "^1.22"
+
 "@protobufjs/aspromise@^1.1.1", "@protobufjs/aspromise@^1.1.2":
   version "1.1.2"
   resolved "https://registry.yarnpkg.com/@protobufjs/aspromise/-/aspromise-1.1.2.tgz#9b8b0cc663d669a7d8f6f5d0893a14d348f30fbf"
@@ -5360,6 +5615,60 @@
     "@sentry/types" "7.106.1"
     "@sentry/utils" "7.106.1"
 
+"@sentry/cli-darwin@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-darwin/-/cli-darwin-2.35.0.tgz#4bc9a07690f0de75d930ba47f4655f6465191768"
+  integrity sha512-dRtDaASkB1ncSbCLMIL8bxki4dPMimSdYz74XOUJ5IvDVVzEInEO7PqvyOj/cyafB+1FSNudaZ90ZRvsNN1Maw==
+
+"@sentry/cli-linux-arm64@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-linux-arm64/-/cli-linux-arm64-2.35.0.tgz#bad8a45b81d2b317f702991783a503f566b2294e"
+  integrity sha512-NpyVz2lQWWkMa9GZkt0m4cA/wsgYnWOE6Z+4ePUGjbOIG3Ws9DLaHjYxUUYI79kxfbVCp7wLo1S6kOkj+M1Dlw==
+
+"@sentry/cli-linux-arm@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-linux-arm/-/cli-linux-arm-2.35.0.tgz#dacfc219876f5dce3d8c65dab7128ea3e493f561"
+  integrity sha512-zNL+/HnepZ4/MkIS8wfoUQxSa+k6r0DSSdX1TpDH5436u+3LB5rfCTBfZ624DWHKMoXX+1dI+rWSi+zL8QFMsg==
+
+"@sentry/cli-linux-i686@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-linux-i686/-/cli-linux-i686-2.35.0.tgz#d0e6401b60b0a4b6c3578998995ba6cb31c1bf20"
+  integrity sha512-vIYwZVqx+kYZdPsenIm+UqjSCKe9Q2Aof6kzrzW0DPR1WyqIWbWG4NbiugiPTiuA1dLjUjYpGP8wyIqb8hxv4w==
+
+"@sentry/cli-linux-x64@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-linux-x64/-/cli-linux-x64-2.35.0.tgz#a1e8e7bff960ed8916b4cc9c0ef75a057e30f989"
+  integrity sha512-7Wy5QNt6wZ8EaxEbHqP0DEiyUcXRVItRt9jzhpa2nCaawL+fwDOQCjUkHGsdIC+y14UqA+er9CaPCSp8sA6Vaw==
+
+"@sentry/cli-win32-i686@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-win32-i686/-/cli-win32-i686-2.35.0.tgz#c1b090f7c740c5b22d1019ca48a84f58cd4b2670"
+  integrity sha512-XDcBUtO5A9elH+xgFNs6NBjkMBnz0sZLo5DU7LE77qKXULnlLeJ63eZD1ukQIRPvxEDsIEPOllRweLuAlUMDtw==
+
+"@sentry/cli-win32-x64@2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli-win32-x64/-/cli-win32-x64-2.35.0.tgz#f592af483da239be846e556f57f5c6fc7dc1dc54"
+  integrity sha512-86yHO+31qAXUeAdSCH7MNodn/cn/9xd2fTrxjtfNZWO0pX0jW91sCdomfBxhu5b977cyV9gNcqeBbc9XSIKIIA==
+
+"@sentry/cli@^2.35.0":
+  version "2.35.0"
+  resolved "https://registry.yarnpkg.com/@sentry/cli/-/cli-2.35.0.tgz#5514eb8f5808bc70707ffa186156f8ff7ca5971e"
+  integrity sha512-7sHRJViEgHTfEXf+HD1Fb2cwmnxlILmb2NNxghP2vvrgC2PhuwuJU7AX4zg7HjJgxH9HBmnn4AJskDujaJ/6cQ==
+  dependencies:
+    https-proxy-agent "^5.0.0"
+    node-fetch "^2.6.7"
+    progress "^2.0.3"
+    proxy-from-env "^1.1.0"
+    which "^2.0.2"
+  optionalDependencies:
+    "@sentry/cli-darwin" "2.35.0"
+    "@sentry/cli-linux-arm" "2.35.0"
+    "@sentry/cli-linux-arm64" "2.35.0"
+    "@sentry/cli-linux-i686" "2.35.0"
+    "@sentry/cli-linux-x64" "2.35.0"
+    "@sentry/cli-win32-i686" "2.35.0"
+    "@sentry/cli-win32-x64" "2.35.0"
+
 "@sentry/core@7.106.1":
   version "7.106.1"
   resolved "https://registry.yarnpkg.com/@sentry/core/-/core-7.106.1.tgz#d4470f2a2f8e0c24e3afe4d7f83f98f5d2858605"
@@ -5368,15 +5677,60 @@
     "@sentry/types" "7.106.1"
     "@sentry/utils" "7.106.1"
 
-"@sentry/node@^7.12.0":
-  version "7.106.1"
-  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-7.106.1.tgz#8728fd79b8575ef0678a3a47f928c2830c9c9b6e"
-  integrity sha512-KB2Lkb9WqocD/gbKIZCk2mQQmx+G3khI9ChJUw6GJzd5mvdQ5xxr4/yQKIHR6L9z3oGWBno9/Xc8Aw9s3ZwGwQ==
+"@sentry/core@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-8.29.0.tgz#52032ece2d7b60f3775f10189c27e26b1cebdbca"
+  integrity sha512-scMbZaJ0Ov8NPgWn86EdjhyTLrhvRVbTxjg0imJAvhIvRbblH3xyqye/17Qnk2fOp8TNDOl7TBZHi0NCFQ5HUw==
+  dependencies:
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
+
+"@sentry/node@^8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.29.0.tgz#6e462b8802356a630c56733dc795a4035464c4ab"
+  integrity sha512-RCKpWR6DUWmlxtms10MRXwJZRrFt1a2P38FjwEEahcdcK1R6wB8GPf0GO4JnJAiw6oeM0MERSqLIcSLT8+FxtA==
+  dependencies:
+    "@opentelemetry/api" "^1.9.0"
+    "@opentelemetry/context-async-hooks" "^1.25.1"
+    "@opentelemetry/core" "^1.25.1"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/instrumentation-connect" "0.39.0"
+    "@opentelemetry/instrumentation-express" "0.42.0"
+    "@opentelemetry/instrumentation-fastify" "0.39.0"
+    "@opentelemetry/instrumentation-fs" "0.15.0"
+    "@opentelemetry/instrumentation-generic-pool" "0.39.0"
+    "@opentelemetry/instrumentation-graphql" "0.43.0"
+    "@opentelemetry/instrumentation-hapi" "0.41.0"
+    "@opentelemetry/instrumentation-http" "0.53.0"
+    "@opentelemetry/instrumentation-ioredis" "0.43.0"
+    "@opentelemetry/instrumentation-koa" "0.43.0"
+    "@opentelemetry/instrumentation-mongodb" "0.47.0"
+    "@opentelemetry/instrumentation-mongoose" "0.42.0"
+    "@opentelemetry/instrumentation-mysql" "0.41.0"
+    "@opentelemetry/instrumentation-mysql2" "0.41.0"
+    "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
+    "@opentelemetry/instrumentation-pg" "0.44.0"
+    "@opentelemetry/instrumentation-redis-4" "0.42.0"
+    "@opentelemetry/resources" "^1.25.1"
+    "@opentelemetry/sdk-trace-base" "^1.25.1"
+    "@opentelemetry/semantic-conventions" "^1.25.1"
+    "@prisma/instrumentation" "5.19.1"
+    "@sentry/core" "8.29.0"
+    "@sentry/opentelemetry" "8.29.0"
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
+    import-in-the-middle "^1.11.0"
+  optionalDependencies:
+    opentelemetry-instrumentation-fetch-node "1.2.3"
+
+"@sentry/opentelemetry@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.29.0.tgz#6ae54c640155925fc42ac86f37d125f9bb983794"
+  integrity sha512-MtfjDMUuKFYlyw9hZohp9xnphz+6QosyHb2zCV3e/fANoA53FDxmg/Co7haMohUCiOwwJPytUmSQQaP0nyL2Uw==
   dependencies:
-    "@sentry-internal/tracing" "7.106.1"
-    "@sentry/core" "7.106.1"
-    "@sentry/types" "7.106.1"
-    "@sentry/utils" "7.106.1"
+    "@sentry/core" "8.29.0"
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
 
 "@sentry/tracing@^7.12.0":
   version "7.106.1"
@@ -5390,6 +5744,11 @@
   resolved "https://registry.yarnpkg.com/@sentry/types/-/types-7.106.1.tgz#ea7c6b9090790e600c4f907f1c8bf94c8db2ecc4"
   integrity sha512-g3OcyAHGugBwkQP4fZYCCZqF2ng9K7yQc9FVngKq/y7PwHm84epXdYYGDGgfQOIC1d5/GMaPxmzI5IIrZexzkg==
 
+"@sentry/types@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.29.0.tgz#c19e43524b8e7766028f4da8f02eddcc33518541"
+  integrity sha512-j4gX3ctzgD4xVWllXAhm6M+kHFEvrFoUPFq60X/pgkjsWCocGuhtNfB0rW43ICG8hCnlz8IYl7O7b8V8qY7SPg==
+
 "@sentry/utils@7.106.1":
   version "7.106.1"
   resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-7.106.1.tgz#7761ed50d489286dd1e482570c498f675445ce82"
@@ -5397,6 +5756,13 @@
   dependencies:
     "@sentry/types" "7.106.1"
 
+"@sentry/utils@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.29.0.tgz#d4a36643369e30ba62ef8f40f149420a100f64bb"
+  integrity sha512-nb93/m3SjQChQJFqJj3oNW3Rz/12yrT7jypTCire3c2hpYWG2uR5n8VY9UUMTA6HLNvdom6tckK7p3bXGXlF0w==
+  dependencies:
+    "@sentry/types" "8.29.0"
+
 "@sideway/address@^4.1.5":
   version "4.1.5"
   resolved "https://registry.yarnpkg.com/@sideway/address/-/address-4.1.5.tgz#4bc149a0076623ced99ca8208ba780d65a99b9d5"
@@ -6711,6 +7077,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/connect@3.4.36":
+  version "3.4.36"
+  resolved "https://registry.yarnpkg.com/@types/connect/-/connect-3.4.36.tgz#e511558c15a39cb29bd5357eebb57bd1459cd1ab"
+  integrity sha512-P63Zd/JUGq+PdrM1lv0Wv5SBYeA2+CORvbrXbngriYY0jzLUWfQMQQxOhjONEz/wlHOAxOdY7CY65rgQdTjq2w==
+  dependencies:
+    "@types/node" "*"
+
 "@types/content-disposition@*":
   version "0.5.8"
   resolved "https://registry.yarnpkg.com/@types/content-disposition/-/content-disposition-0.5.8.tgz#6742a5971f490dc41e59d277eee71361fea0b537"
@@ -7034,6 +7407,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/mysql@2.15.26":
+  version "2.15.26"
+  resolved "https://registry.yarnpkg.com/@types/mysql/-/mysql-2.15.26.tgz#f0de1484b9e2354d587e7d2bd17a873cc8300836"
+  integrity sha512-DSLCOXhkvfS5WNNPbfn2KdICAmk8lLc+/PNvnPnF7gOdMZCxopXduqv0OQ13y/yA/zXTSikZZqVgybUxOEg6YQ==
+  dependencies:
+    "@types/node" "*"
+
 "@types/node@*", "@types/node@>=10.0.0", "@types/node@>=13.7.0", "@types/node@^20.10.4":
   version "20.11.27"
   resolved "https://registry.yarnpkg.com/@types/node/-/node-20.11.27.tgz#debe5cfc8a507dd60fe2a3b4875b1604f215c2ac"
@@ -7089,6 +7469,13 @@
   dependencies:
     "@types/pg" "*"
 
+"@types/pg-pool@2.0.6":
+  version "2.0.6"
+  resolved "https://registry.yarnpkg.com/@types/pg-pool/-/pg-pool-2.0.6.tgz#1376d9dc5aec4bb2ec67ce28d7e9858227403c77"
+  integrity sha512-TaAUE5rq2VQYxab5Ts7WZhKNmuN78Q6PiFonTDdpbx8a1H0M1vhy3rhiMjl+e2iHmogyMw7jZF4FrE6eJUy5HQ==
+  dependencies:
+    "@types/pg" "*"
+
 "@types/pg@*":
   version "8.11.2"
   resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.11.2.tgz#e5c306601d2e0cc54c0801cc61a41761c8a95c92"
@@ -7191,6 +7578,11 @@
   resolved "https://registry.yarnpkg.com/@types/shimmer/-/shimmer-1.0.5.tgz#491d8984d4510e550bfeb02d518791d7f59d2b88"
   integrity sha512-9Hp0ObzwwO57DpLFF0InUjUm/II8GmKAvzbefxQTihCb7KI6yc9yzf0nLc4mVdby5N4DRCgQM2wCup9KTieeww==
 
+"@types/shimmer@^1.2.0":
+  version "1.2.0"
+  resolved "https://registry.yarnpkg.com/@types/shimmer/-/shimmer-1.2.0.tgz#9b706af96fa06416828842397a70dfbbf1c14ded"
+  integrity sha512-UE7oxhQLLd9gub6JKIAhDq06T0F6FnztwMNRvYgjeQSBeMc1ZG/tA47EwfduvkuQS8apbkM/lpLpWsaCeYsXVg==
+
 "@types/superagent@*":
   version "8.1.4"
   resolved "https://registry.yarnpkg.com/@types/superagent/-/superagent-8.1.4.tgz#f8290d1b7d6081f84f3047851c190c4a3c8cdb21"
@@ -7532,6 +7924,11 @@ acorn-import-assertions@^1.9.0:
   resolved "https://registry.yarnpkg.com/acorn-import-assertions/-/acorn-import-assertions-1.9.0.tgz#507276249d684797c84e0734ef84860334cfb1ac"
   integrity sha512-cmMwop9x+8KFhxvKrKfPYmN6/pKTYYHBqLa0DfvVZcKMJWNyWLnaqND7dx/qn66R7ewM1UX5XMaDVP5wlVTaVA==
 
+acorn-import-attributes@^1.9.5:
+  version "1.9.5"
+  resolved "https://registry.yarnpkg.com/acorn-import-attributes/-/acorn-import-attributes-1.9.5.tgz#7eb1557b1ba05ef18b5ed0ec67591bfab04688ef"
+  integrity sha512-n02Vykv5uA3eHGM/Z2dQrcD56kL8TyDb2p1+0P83PClMnC/nc+anbQRhIOWnSq4Ke/KvDPrY3C9hDtC/A3eHnQ==
+
 acorn-jsx@^5.3.1:
   version "5.3.2"
   resolved "https://registry.yarnpkg.com/acorn-jsx/-/acorn-jsx-5.3.2.tgz#7ed5bb55908b3b2f1bc55c6af1653bada7f07937"
@@ -8726,6 +9123,11 @@ cipher-base@^1.0.0, cipher-base@^1.0.1, cipher-base@^1.0.3:
     inherits "^2.0.1"
     safe-buffer "^5.0.1"
 
+cjs-module-lexer@^1.2.2:
+  version "1.4.1"
+  resolved "https://registry.yarnpkg.com/cjs-module-lexer/-/cjs-module-lexer-1.4.1.tgz#707413784dbb3a72aa11c2f2b042a0bef4004170"
+  integrity sha512-cuSVIHi9/9E/+821Qjdvngor+xpnlwnuwIyZOaLmHBVdXL+gP+I6QQB9VkO7RI77YIcTV+S1W9AreJ5eN63JBA==
+
 classic-level@^1.2.0:
   version "1.4.1"
   resolved "https://registry.yarnpkg.com/classic-level/-/classic-level-1.4.1.tgz#169ecf9f9c6200ad42a98c8576af449c1badbaee"
@@ -9367,6 +9769,13 @@ debug@^4.3.3:
   dependencies:
     ms "2.1.2"
 
+debug@^4.3.5:
+  version "4.3.7"
+  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
+  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
+  dependencies:
+    ms "^2.1.3"
+
 decamelize-keys@^1.1.0:
   version "1.1.1"
   resolved "https://registry.yarnpkg.com/decamelize-keys/-/decamelize-keys-1.1.1.tgz#04a2d523b2f18d80d0158a43b895d56dff8d19d8"
@@ -11538,6 +11947,26 @@ import-in-the-middle@1.3.5:
   dependencies:
     module-details-from-path "^1.0.3"
 
+import-in-the-middle@1.7.1:
+  version "1.7.1"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.7.1.tgz#3e111ff79c639d0bde459bd7ba29dd9fdf357364"
+  integrity sha512-1LrZPDtW+atAxH42S6288qyDFNQ2YCty+2mxEPRtfazH6Z5QwkaBSTS2ods7hnVJioF6rkRfNoA6A/MstpFXLg==
+  dependencies:
+    acorn "^8.8.2"
+    acorn-import-assertions "^1.9.0"
+    cjs-module-lexer "^1.2.2"
+    module-details-from-path "^1.0.3"
+
+import-in-the-middle@^1.11.0, import-in-the-middle@^1.8.1:
+  version "1.11.0"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.0.tgz#a94c4925b8da18256cde3b3b7b38253e6ca5e708"
+  integrity sha512-5DimNQGoe0pLUHbR9qK84iWaWjjbsxiqXnw6Qz64+azRgleqv9k2kTt5fw7QsOpmaGYtuxxursnPPsnTKEx10Q==
+  dependencies:
+    acorn "^8.8.2"
+    acorn-import-attributes "^1.9.5"
+    cjs-module-lexer "^1.2.2"
+    module-details-from-path "^1.0.3"
+
 import-meta-resolve@^4.0.0:
   version "4.0.0"
   resolved "https://registry.yarnpkg.com/import-meta-resolve/-/import-meta-resolve-4.0.0.tgz#0b1195915689f60ab00f830af0f15cc841e8919e"
@@ -13515,7 +13944,7 @@ node-domexception@^1.0.0:
   resolved "https://registry.yarnpkg.com/node-domexception/-/node-domexception-1.0.0.tgz#6888db46a1f71c0b76b3f7555016b63fe64766e5"
   integrity sha512-/jKZoMpw0F8GRwl4/eLROPA3cfcXtLApP0QzLmUT/HuPCZWyB7IY9ZrMeKw2O/nFIqPQB3PVM9aYm0F312AXDQ==
 
-node-fetch@^2.6.1, node-fetch@^2.6.12, node-fetch@^2.6.8, node-fetch@^2.6.9:
+node-fetch@^2.6.1, node-fetch@^2.6.12, node-fetch@^2.6.7, node-fetch@^2.6.8, node-fetch@^2.6.9:
   version "2.7.0"
   resolved "https://registry.yarnpkg.com/node-fetch/-/node-fetch-2.7.0.tgz#d0f0fa6e3e2dc1d27efcd8ad99d550bda94d187d"
   integrity sha512-c4FRfUm/dbcWZ7U+1Wq0AwCyFL+3nt2bEw05wfxSz+DWpWsitgmSgYmy2dQdWyKC1694ELPqMs/YzUSNozLt8A==
@@ -13815,6 +14244,14 @@ onetime@^5.1.0, onetime@^5.1.2:
   dependencies:
     mimic-fn "^2.1.0"
 
+opentelemetry-instrumentation-fetch-node@1.2.3:
+  version "1.2.3"
+  resolved "https://registry.yarnpkg.com/opentelemetry-instrumentation-fetch-node/-/opentelemetry-instrumentation-fetch-node-1.2.3.tgz#beb24048bdccb1943ba2a5bbadca68020e448ea7"
+  integrity sha512-Qb11T7KvoCevMaSeuamcLsAD+pZnavkhDnlVL0kRozfhl42dKG5Q3anUklAFKJZjY3twLR+BnRa6DlwwkIE/+A==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.46.0"
+    "@opentelemetry/semantic-conventions" "^1.17.0"
+
 opentracing@^0.14.4:
   version "0.14.7"
   resolved "https://registry.yarnpkg.com/opentracing/-/opentracing-0.14.7.tgz#25d472bd0296dc0b64d7b94cbc995219031428f5"
@@ -14470,7 +14907,7 @@ progress-events@^1.0.0:
   resolved "https://registry.yarnpkg.com/progress-events/-/progress-events-1.0.0.tgz#34f5e8fdb5dae3561837b22672d1e02277bb2109"
   integrity sha512-zIB6QDrSbPfRg+33FZalluFIowkbV5Xh1xSuetjG+rlC5he6u2dc6VQJ0TbMdlN3R1RHdpOqxEFMKTnQ+itUwA==
 
-progress@^2.0.0:
+progress@^2.0.0, progress@^2.0.3:
   version "2.0.3"
   resolved "https://registry.yarnpkg.com/progress/-/progress-2.0.3.tgz#7e8cf8d8f5b8f239c1bc68beb4eb78567d572ef8"
   integrity sha512-7PiHtLll5LdnKIMw100I+8xJXR5gW2QwWYkT6iJva0bXitZKa/XMrSbdmg3r2Xnaidz9Qumd0VPaMrZlF9V9sA==
@@ -15007,6 +15444,15 @@ require-in-the-middle@^7.1.0:
     module-details-from-path "^1.0.3"
     resolve "^1.22.1"
 
+require-in-the-middle@^7.1.1:
+  version "7.4.0"
+  resolved "https://registry.yarnpkg.com/require-in-the-middle/-/require-in-the-middle-7.4.0.tgz#606977820d4b5f9be75e5a108ce34cfed25b3bb4"
+  integrity sha512-X34iHADNbNDfr6OTStIAHWSAvvKQRYgLO6duASaVf7J2VA3lvmNYboAHOuLC2huav1IwgZJtyEcJCKVzFxOSMQ==
+  dependencies:
+    debug "^4.3.5"
+    module-details-from-path "^1.0.3"
+    resolve "^1.22.8"
+
 require-main-filename@^2.0.0:
   version "2.0.0"
   resolved "https://registry.yarnpkg.com/require-main-filename/-/require-main-filename-2.0.0.tgz#d0b329ecc7cc0f61649f62215be69af54aa8989b"
@@ -15042,7 +15488,7 @@ resolve-global@1.0.0, resolve-global@^1.0.0:
   dependencies:
     global-dirs "^0.1.1"
 
-resolve@^1.1.6, resolve@^1.1.7, resolve@^1.10.0, resolve@^1.20.0, resolve@^1.22.1, resolve@^1.22.2, resolve@^1.22.4:
+resolve@^1.1.6, resolve@^1.1.7, resolve@^1.10.0, resolve@^1.20.0, resolve@^1.22.1, resolve@^1.22.2, resolve@^1.22.4, resolve@^1.22.8:
   version "1.22.8"
   resolved "https://registry.yarnpkg.com/resolve/-/resolve-1.22.8.tgz#b6c87a9f2aa06dfab52e3d70ac8cde321fa5a48d"
   integrity sha512-oKWePCxqpd6FlLvGV1VU0x7bkPmmCNolxzjMf4NczoDnQcIWrAF+cPtZn5i6n+RfD2d9i0tzpKnG6Yk168yIyw==
@@ -15283,6 +15729,11 @@ semver@^7.2.1, semver@^7.3.2, semver@^7.3.4, semver@^7.3.5, semver@^7.3.8, semve
   dependencies:
     lru-cache "^6.0.0"
 
+semver@^7.5.2:
+  version "7.6.3"
+  resolved "https://registry.yarnpkg.com/semver/-/semver-7.6.3.tgz#980f7b5550bc175fb4dc09403085627f9eb33143"
+  integrity sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==
+
 semver@~7.0.0:
   version "7.0.0"
   resolved "https://registry.yarnpkg.com/semver/-/semver-7.0.0.tgz#5f3ca35761e47e05b206c6daff2cf814f0316b8e"
@@ -15756,16 +16207,7 @@ string-template@~0.2.1:
   resolved "https://registry.yarnpkg.com/string-template/-/string-template-0.2.1.tgz#42932e598a352d01fc22ec3367d9d84eec6c9add"
   integrity sha512-Yptehjogou2xm4UJbxJ4CxgZx12HBfeystp0y3x7s4Dj32ltVVG1Gg8YhKjHZkHicuKpZX/ffilA8505VbUbpw==
 
-"string-width-cjs@npm:string-width@^4.2.0":
-  version "4.2.3"
-  resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
-  integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
-  dependencies:
-    emoji-regex "^8.0.0"
-    is-fullwidth-code-point "^3.0.0"
-    strip-ansi "^6.0.1"
-
-"string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
+"string-width-cjs@npm:string-width@^4.2.0", "string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
   version "4.2.3"
   resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
   integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
@@ -15838,7 +16280,7 @@ stringify-object@3.3.0:
     is-obj "^1.0.1"
     is-regexp "^1.0.0"
 
-"strip-ansi-cjs@npm:strip-ansi@^6.0.1":
+"strip-ansi-cjs@npm:strip-ansi@^6.0.1", strip-ansi@^6.0.0, strip-ansi@^6.0.1:
   version "6.0.1"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
   integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
@@ -15852,13 +16294,6 @@ strip-ansi@^3.0.0:
   dependencies:
     ansi-regex "^2.0.0"
 
-strip-ansi@^6.0.0, strip-ansi@^6.0.1:
-  version "6.0.1"
-  resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
-  integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
-  dependencies:
-    ansi-regex "^5.0.1"
-
 strip-ansi@^7.0.1:
   version "7.1.0"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-7.1.0.tgz#d5b6568ca689d8561370b0707685d22434faff45"
@@ -16894,7 +17329,7 @@ workerpool@6.2.1:
   resolved "https://registry.yarnpkg.com/workerpool/-/workerpool-6.2.1.tgz#46fc150c17d826b86a008e5a4508656777e9c343"
   integrity sha512-ILEIE97kDZvF9Wb9f6h5aXK4swSlKGUcOEGiIYb2OOu/IrDU9iwj0fD//SsA6E5ibwJxpEvhullJY4Sl4GcpAw==
 
-"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0":
+"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
   version "7.0.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
   integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
@@ -16912,15 +17347,6 @@ wrap-ansi@^6.2.0:
     string-width "^4.1.0"
     strip-ansi "^6.0.0"
 
-wrap-ansi@^7.0.0:
-  version "7.0.0"
-  resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
-  integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
-  dependencies:
-    ansi-styles "^4.0.0"
-    string-width "^4.1.0"
-    strip-ansi "^6.0.0"
-
 wrap-ansi@^8.1.0:
   version "8.1.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-8.1.0.tgz#56dc22368ee570face1b49819975d9b9a5ead214"

From 2c9efb1e93f4fd0e5737f91dd42075bc742bddb2 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 9 Sep 2024 15:45:27 +0200
Subject: [PATCH 02/81] fix env

---
 .github/workflows/build-server.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build-server.yaml b/.github/workflows/build-server.yaml
index 31341a659..5b9558ebe 100644
--- a/.github/workflows/build-server.yaml
+++ b/.github/workflows/build-server.yaml
@@ -23,6 +23,7 @@ env:
   AWS_ACCOUNT_ID: ${{ secrets.AWS_ACCOUNT_ID }}
   AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
   AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
+  SENTRY_AUTH_TOKEN: ${{ secrets.SENTRY_AUTH_TOKEN }}
   CONTAINER_IMAGE: desci-server
   DOCKER_BUILDKIT: 1
 

From 633a2a36def96c16d0ebe35a61199ad2c8adb4be Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 9 Sep 2024 15:54:43 +0200
Subject: [PATCH 03/81] add sentry build step

---
 .github/workflows/build-server.yaml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/.github/workflows/build-server.yaml b/.github/workflows/build-server.yaml
index 5b9558ebe..c4676434d 100644
--- a/.github/workflows/build-server.yaml
+++ b/.github/workflows/build-server.yaml
@@ -58,6 +58,10 @@ jobs:
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-research-object.json
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-dpid.json
 
+      - name: Set up Sentry CLI
+        run: |
+          sentry-cli --version
+
       - name: Run tests
         run: |
           cd desci-server && export DOCKER_BUILDKIT=1 && yarn --ignore-engines && yarn test
@@ -114,6 +118,10 @@ jobs:
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-research-object.json
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-dpid.json
 
+      - name: Set up Sentry CLI
+        run: |
+          sentry-cli --version
+
       - name: Build and tag the image (DEV)
         if: github.ref == 'refs/heads/develop'
         run: |

From b1b957a6b547881b3f6f152404683485950d66c9 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 10 Sep 2024 01:53:35 +0200
Subject: [PATCH 04/81] add sentry build step

---
 .github/workflows/build-and-test.yaml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index 567ab7bc8..b355ee139 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -55,6 +55,10 @@ jobs:
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-research-object.json
           echo "{\"proxies\":[{\"address\":\"\"}]}" > desci-server/src/desci-contracts-config/unknown-dpid.json
 
+      - name: Set up Sentry CLI
+        run: |
+          sentry-cli --version
+
       - name: Run tests
         run: |
           cd desci-server && export DOCKER_BUILDKIT=1 && yarn --ignore-engines && yarn test

From dd604cdd948413d039a728cff381ac5844a49a5c Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 10 Sep 2024 02:06:40 +0200
Subject: [PATCH 05/81] add sentry build step

---
 .github/workflows/build-and-test.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index b355ee139..a18e84a65 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -57,6 +57,7 @@ jobs:
 
       - name: Set up Sentry CLI
         run: |
+          npm install -g @sentry/cli
           sentry-cli --version
 
       - name: Run tests

From 53387638a0fc369a446a14f24c35db557f4f7277 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Wed, 11 Sep 2024 17:38:33 +0200
Subject: [PATCH 06/81] sentry cli token

---
 .github/workflows/build-and-test.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index a18e84a65..ea996bc75 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -22,6 +22,7 @@ env:
   AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
   CONTAINER_IMAGE: desci-server
   DOCKER_BUILDKIT: 1
+  SENTRY_AUTH_TOKEN: ${{ secrets.SENTRY_AUTH_TOKEN }}
 
 jobs:
   build-and-test:

From 456c62bfa12dac218ae02b20b29da1edd29edf45 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Wed, 11 Sep 2024 20:19:21 +0200
Subject: [PATCH 07/81] sentry cli token

---
 .github/workflows/build-and-test.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index ea996bc75..9b3eb3d9e 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -60,6 +60,7 @@ jobs:
         run: |
           npm install -g @sentry/cli
           sentry-cli --version
+          sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
 
       - name: Run tests
         run: |

From 34148db0e2e7d3c6c6a00ce48c0841b95e78445a Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Sun, 15 Sep 2024 18:13:56 +0200
Subject: [PATCH 08/81] dont autorun sentry on yarn build

---
 desci-server/package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/desci-server/package.json b/desci-server/package.json
index 7077dab2d..abbcf4d5f 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -25,7 +25,7 @@
     "script:seed-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-social-data.ts",
     "script:DESTRUCTIVE-clear-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/DESTRUCTIVE-clear-social-data.ts",
     "script:seed-community-member": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-community-members.ts",
-    "build": "rimraf dist && tsc && yarn copy-files && yarn sentry:sourcemaps",
+    "build": "rimraf dist && tsc && yarn copy-files",
     "copy-files": "copyfiles -u 1 src/**/*.cjs dist/",
     "generate": "npx prisma generate",
     "migrate:local": "DATABASE_URL=postgresql://walter:white@localhost:5433/boilerplate npx prisma migrate dev",
@@ -184,4 +184,4 @@
   "prisma": {
     "seed": "node --no-warnings=ExperimentalWarning --loader ts-node/esm prisma/seed.ts"
   }
-}
\ No newline at end of file
+}

From 9628bf77474b488616e75e07b8bc0911c21b4837 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Thu, 12 Sep 2024 18:28:41 +0200
Subject: [PATCH 09/81] compose: disable broken grobid healthcheck

---
 docker-compose.dev.yml | 21 +++++++++++++++------
 1 file changed, 15 insertions(+), 6 deletions(-)

diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 94e07ce89..7bf43dd70 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -63,7 +63,7 @@ services:
       graph_node:
         condition: service_started
       redis:
-        condition: service_started
+        condition: service_healthy
       # - nodes_media # UNCOMMENT FOR LOCAL DEV OF nodes-media
     links:
       - db_postgres
@@ -173,6 +173,11 @@ services:
   redis:
     image: "redis:7-alpine"
     container_name: "redis_cache"
+    healthcheck:
+      test: [ "CMD", "redis-cli", "ping" ]
+      interval: 5s
+      timeout: 1s
+      retries: 5
     ports:
       - "6379:6379"
     volumes:
@@ -224,11 +229,6 @@ services:
       - "8070:8070"
     environment:
       - JAVA_OPTS=-Xmx2G -Xms2G
-    healthcheck:
-      test: ["CMD", "curl", "-f", "http://localhost:8070/api/isalive"]
-      interval: 30s
-      timeout: 10s
-      retries: 5
 
   dpid_resolver:
     image: descilabs/dpid-resolver
@@ -241,6 +241,12 @@ services:
       OPTIMISM_RPC_URL: http://host.docker.internal:8545
       CERAMIC_URL: http://host.docker.internal:7007
       IPFS_GATEWAY: http://host.docker.internal:8089/ipfs
+      REDIS_HOST: http://host.docker.internal
+      REDIS_PORT: 6379
+      # How long to store anchored commit info (default 24 hours)
+      CACHE_TTL_ANCHORED: 86400
+      # How long to store pending commit info
+      CACHE_TTL_PENDING: 300
     restart: on-failure
     ports:
       - "5460:5460"
@@ -258,3 +264,6 @@ services:
         condition: service_healthy
       ceramic:
         condition: service_healthy
+      redis:
+        condition: service_healthy
+

From 3bcf7969332cfca674053d94b74e7c9ab11f39e5 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 00:38:41 +0200
Subject: [PATCH 10/81] run sentry?

---
 .github/workflows/build-server.yaml | 1 +
 desci-server/package.json           | 4 ++--
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build-server.yaml b/.github/workflows/build-server.yaml
index c4676434d..b25936ff2 100644
--- a/.github/workflows/build-server.yaml
+++ b/.github/workflows/build-server.yaml
@@ -121,6 +121,7 @@ jobs:
       - name: Set up Sentry CLI
         run: |
           sentry-cli --version
+          sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
 
       - name: Build and tag the image (DEV)
         if: github.ref == 'refs/heads/develop'
diff --git a/desci-server/package.json b/desci-server/package.json
index abbcf4d5f..739b8e4aa 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -25,7 +25,7 @@
     "script:seed-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-social-data.ts",
     "script:DESTRUCTIVE-clear-social-data": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/DESTRUCTIVE-clear-social-data.ts",
     "script:seed-community-member": "debug=* node --no-warnings --enable-source-maps --loader ts-node/esm ./src/scripts/seed-community-members.ts",
-    "build": "rimraf dist && tsc && yarn copy-files",
+    "build": "rimraf dist && tsc && yarn copy-files; if [ \"$SENTRY_AUTH_TOKEN\" ]; then yarn sentry:sourcemaps; else echo 'SENTRY_AUTH_TOKEN not set, sourcemaps will not upload'; fi",
     "copy-files": "copyfiles -u 1 src/**/*.cjs dist/",
     "generate": "npx prisma generate",
     "migrate:local": "DATABASE_URL=postgresql://walter:white@localhost:5433/boilerplate npx prisma migrate dev",
@@ -51,7 +51,7 @@
     "podman:dev": "podman-compose --file docker-compose.yml --file docker-compose.dev.yml up --build",
     "email-dev": "email dev --dir ./src/templates/emails --port 3777",
     "check-deps": "npx npm-check",
-    "sentry:sourcemaps": "sentry-cli sourcemaps inject --org desci-labs --project nodes-backend ./dist && sentry-cli sourcemaps upload --org desci-labs --project nodes-backend ./dist"
+    "sentry:sourcemaps": "sentry-cli sourcemaps inject --org desci-labs --project nodes-backend ./dist && sentry-cli sourcemaps upload --org desci-labs --project nodes-backend ./dist && echo 'Sentry sourcemaps uploaded'"
   },
   "dependencies": {
     "@automerge/automerge-repo": "^1.0.19",

From 8c055543a8342c8cea16e244a668e4c7714e9bed Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 00:46:42 +0200
Subject: [PATCH 11/81] echo sentrytoken to env for build

---
 .github/workflows/build-and-test.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index 9b3eb3d9e..181bf3e8e 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -61,6 +61,8 @@ jobs:
           npm install -g @sentry/cli
           sentry-cli --version
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
+          # append to .env
+          echo "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
 
       - name: Run tests
         run: |

From 6594d3ce8596fb20179c5e5b3a85b43b4b73fdb8 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 00:54:04 +0200
Subject: [PATCH 12/81] fix newline

---
 .github/workflows/build-and-test.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index 181bf3e8e..75808b2e8 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -62,7 +62,7 @@ jobs:
           sentry-cli --version
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
           # append to .env
-          echo "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
+          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
 
       - name: Run tests
         run: |

From 2c3fddde39f3b2928a5637e8af006178cdfe500b Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 01:02:24 +0200
Subject: [PATCH 13/81] add sentry token to inner env

---
 .github/workflows/build-and-test.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index 75808b2e8..7b4a08242 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -63,6 +63,7 @@ jobs:
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
           # append to .env
           echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
+          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> ./desci-server/.env
 
       - name: Run tests
         run: |

From 8c14ce63e5167c64c615c8a680af8caec90a6fea Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 01:14:48 +0200
Subject: [PATCH 14/81] test build

---
 .github/workflows/build-and-test.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index 7b4a08242..ae1f22605 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -63,7 +63,7 @@ jobs:
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
           # append to .env
           echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
-          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> ./desci-server/.env
+          yarn build
 
       - name: Run tests
         run: |

From ddc75324ded90170eedd041acab4b748817d9e96 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 01:19:42 +0200
Subject: [PATCH 15/81] test build

---
 .github/workflows/build-and-test.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build-and-test.yaml b/.github/workflows/build-and-test.yaml
index ae1f22605..179b4ac83 100644
--- a/.github/workflows/build-and-test.yaml
+++ b/.github/workflows/build-and-test.yaml
@@ -62,8 +62,8 @@ jobs:
           sentry-cli --version
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
           # append to .env
-          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> .env
-          yarn build
+          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> desci-server/.env
+          cd desci-server && yarn build
 
       - name: Run tests
         run: |

From 01b095117ea4841bb706c7f45643e5a84a9ca8e1 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 02:10:21 +0200
Subject: [PATCH 16/81] use correct index and default context novelty sort

---
 .../src/controllers/search/multiQuery.ts      | 19 ++++++++-----------
 .../src/services/ElasticSearchService.ts      |  8 ++++----
 2 files changed, 12 insertions(+), 15 deletions(-)

diff --git a/desci-server/src/controllers/search/multiQuery.ts b/desci-server/src/controllers/search/multiQuery.ts
index 476b70ea3..e35225243 100644
--- a/desci-server/src/controllers/search/multiQuery.ts
+++ b/desci-server/src/controllers/search/multiQuery.ts
@@ -58,7 +58,8 @@ export const multiQuery = async (
     });
   }
 
-  const primaryEntity = 'works'; // Hard coded for now to not affect results without a 'works' query.
+  let primaryEntity = 'works'; // Hard coded for now to not affect results without a 'works' query.
+
   // const primaryEntity = Object.keys(validEntityQueries[0])[0];
 
   const esQueries = validEntityQueries.map((q) => {
@@ -71,24 +72,20 @@ export const multiQuery = async (
   const esSort = buildSortQuery(primaryEntity, sort.field, sort.order);
   const esBoolQuery = buildBoolQuery(esQueries, filters);
 
-  const searchTermIsNonEmpty = Object.values(queries).some((q) => q['works'].length > 0);
+  const searchTermIsNonEmpty = Object.values(queries).some((q) => q['works']?.length > 0);
 
   // if search term is empty and there is no other sorting, then sort by content novelty and date
   if (!searchTermIsNonEmpty && sort.field === 'relevance') {
     esSort.push({
-      _script: {
-        type: 'number',
-        script: {
-          lang: 'painless',
-          source:
-            "params._source.containsKey('content_novelty_percentile') ? params._source['content_novelty_percentile'] : 0",
-        },
-        order: 'desc',
-      },
+      content_novelty_percentile: { order: 'desc', missing: '_last' },
     });
     esSort.push({ publication_year: { order: 'desc' } });
   }
 
+  if (primaryEntity === 'works') {
+    primaryEntity = 'works_opt';
+  }
+
   const finalQuery = {
     index: primaryEntity,
     body: {
diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index fd89e4c69..5cd7c4a5a 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -62,7 +62,7 @@ export const RELEVANT_FIELDS = {
 };
 
 type SortOrder = 'asc' | 'desc';
-type SortField = { [field: string]: { order: SortOrder; missing?: string; type?: string; script?: any } };
+type SortField = { [field: string]: { order: SortOrder; missing?: string | number; type?: string; script?: any } };
 
 const baseSort: SortField[] = [{ _score: { order: 'desc' } }];
 
@@ -202,7 +202,7 @@ function buildFilter(filter: Filter) {
           nested: {
             path: filter.field.split('.')[0],
             query: {
-              match_phrase: { [filter.field]: value },
+              match_phrase: { [filter.field]: { query: value, analyzer: 'edge_ngram_analyzer' } },
             },
           },
         }));
@@ -221,12 +221,12 @@ function buildFilter(filter: Filter) {
           nested: {
             path: fieldParts[0],
             query: {
-              match_phrase: { [filter.field]: filter.value },
+              match_phrase: { [filter.field]: { query: filter.value, analyzer: 'edge_ngram_analyzer' } },
             },
           },
         };
       }
-      return { match_phrase: { [filter.field]: filter.value } };
+      return { match_phrase: { [filter.field]: { query: filter.value, analyzer: 'edge_ngram_analyzer' } } };
     case 'match':
       const matchQuery = {
         match: {

From be7088cc22dcae153dfa2a093dde0be30a282cb5 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 17 Sep 2024 03:30:29 +0200
Subject: [PATCH 17/81] added concepts, made exceptions for nesting
 institutions for new index

---
 desci-server/src/controllers/search/multiQuery.ts |  4 ++--
 desci-server/src/services/ElasticSearchService.ts | 12 +++++++-----
 2 files changed, 9 insertions(+), 7 deletions(-)

diff --git a/desci-server/src/controllers/search/multiQuery.ts b/desci-server/src/controllers/search/multiQuery.ts
index e35225243..071a3e98b 100644
--- a/desci-server/src/controllers/search/multiQuery.ts
+++ b/desci-server/src/controllers/search/multiQuery.ts
@@ -75,11 +75,11 @@ export const multiQuery = async (
   const searchTermIsNonEmpty = Object.values(queries).some((q) => q['works']?.length > 0);
 
   // if search term is empty and there is no other sorting, then sort by content novelty and date
-  if (!searchTermIsNonEmpty && sort.field === 'relevance') {
+  if (sort.field === 'relevance') {
     esSort.push({
       content_novelty_percentile: { order: 'desc', missing: '_last' },
     });
-    esSort.push({ publication_year: { order: 'desc' } });
+    // esSort.push({ publication_year: { order: 'desc' } });
   }
 
   if (primaryEntity === 'works') {
diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 5cd7c4a5a..ea157334e 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -233,12 +233,12 @@ function buildFilter(filter: Filter) {
           [filter.field]: {
             query: filter.value,
             operator: filter.matchLogic || 'or',
-            ...(filter.fuzziness && { fuzziness: filter.fuzziness }),
+            // ...(filter.fuzziness && { fuzziness: filter.fuzziness }),
           },
         },
       };
 
-      if (filter.field.includes('.')) {
+      if (filter.field.includes('.') && !filter.field.includes('institutions')) {
         const [nestedPath, nestedField] = filter.field.split('.');
         return {
           nested: {
@@ -261,12 +261,14 @@ function getRelevantFields(entity: string) {
   if (entity === 'works') return RELEVANT_FIELDS.works;
   if (entity === 'authors') return RELEVANT_FIELDS.authors;
   if (entity === 'topics') return RELEVANT_FIELDS.topics;
+  if (entity === 'concepts') return RELEVANT_FIELDS.concepts;
   if (entity === 'subfields') return RELEVANT_FIELDS.subfields;
   if (entity === 'institutions') return RELEVANT_FIELDS.institutions;
   if (entity === 'sources') return RELEVANT_FIELDS.sources;
   if (entity === 'autocomplete_full') return RELEVANT_FIELDS.autocomplete_full;
   if (entity === 'works_authors') return RELEVANT_FIELDS.denorm_authors;
   if (entity === 'works_fields') return RELEVANT_FIELDS.denorm_fields;
+  if (entity === 'works_concepts') return RELEVANT_FIELDS.denorm_concepts;
   if (entity === 'works_topics') return RELEVANT_FIELDS.denorm_topics;
   if (entity === 'works_countries') return RELEVANT_FIELDS.denorm_countries;
   if (entity === 'works_institutions') return RELEVANT_FIELDS.denorm_institutions;
@@ -285,7 +287,7 @@ export function buildMultiMatchQuery(
 
   let multiMatchQuery: QueryDslQueryContainer;
 
-  if (entity.startsWith('works_')) {
+  if (entity.startsWith('works_') && !fields[0]?.includes('institutions')) {
     const nestedField = fields[0]?.split('.')[0];
     multiMatchQuery = {
       nested: {
@@ -295,7 +297,7 @@ export function buildMultiMatchQuery(
             query: query,
             fields: fields,
             type: 'best_fields',
-            fuzziness: fuzzy, // Retained fuzziness
+            // fuzziness: fuzzy, // Retained fuzziness
           },
         },
       },
@@ -306,7 +308,7 @@ export function buildMultiMatchQuery(
         query: query,
         fields: fields,
         type: 'best_fields',
-        fuzziness: fuzzy, // Retained fuzziness
+        // fuzziness: fuzzy, // Retained fuzziness
       },
     };
   }

From 54ebbd7313f4ebd22d725459c288ffd212198448 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 17 Sep 2024 13:44:36 +0200
Subject: [PATCH 18/81] compose: sync kubo with live deployments, bump ceramic
 to 6.4.0

---
 docker-compose.dev.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 7bf43dd70..2be51c7fe 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -121,7 +121,7 @@ services:
       # EXPERIMENTAL_SUBGRAPH_VERSION_SWITCHING_MODE: synced
 
   ipfs:
-    image: ipfs/kubo:v0.24.0
+    image: ipfs/kubo:v0.26.0
     container_name: "ipfs"
     environment:
       IPFS_SWARM_KEY: "/key/swarm/psk/1.0.0/\n/base16/\n9d002c50635a479d29dcc0ccb49d862952a0dcc52baddd253167adcd496c8d04"
@@ -147,7 +147,7 @@ services:
       timeout: 2s
 
   ipfs_public:
-    image: ipfs/kubo:v0.24.0
+    image: ipfs/kubo:v0.26.0
     container_name: "ipfs_public"
     ports:
       - "5002:5001"
@@ -184,7 +184,7 @@ services:
       - ./local-data/redis:/data
 
   ceramic:
-    image: ceramicnetwork/js-ceramic:5.16.0
+    image: ceramicnetwork/js-ceramic:6.4.0
     container_name: ceramic
     ports:
       - "7007:7007"

From 7d43c7f5c5cf1898cc1338f065d8226ddf4cef43 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 17 Sep 2024 16:02:32 +0200
Subject: [PATCH 19/81] ceramic: bump to 6.4.0, enable prometheus endpoints,
 enable historical sync

---
 ceramic-k8s/ceramic_deployment_dev.yaml  | 8 ++++----
 ceramic-k8s/ceramic_deployment_prod.yaml | 8 ++++----
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/ceramic-k8s/ceramic_deployment_dev.yaml b/ceramic-k8s/ceramic_deployment_dev.yaml
index c2fbb5b5c..c18556a28 100644
--- a/ceramic-k8s/ceramic_deployment_dev.yaml
+++ b/ceramic-k8s/ceramic_deployment_dev.yaml
@@ -32,7 +32,7 @@ spec:
 
           {{- end -}}
           {{- with secret "secrets/desci-server/dev/db" -}}
-          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"metrics-exporter-enabled\":false,\"metrics-port\":9090},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"models\":[]}}" > daemon.config.json
+          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6mktbkjrmnhvj37qfto12911ycm2jukduzwhdvetu9s5a9t\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
           export NODE_ENV=production
           export CERAMIC_PUBSUB_QPS_LIMIT=500
           echo "envset"; 
@@ -41,7 +41,7 @@ spec:
         App: JsCeramicDev
     spec:
       containers:
-        - image: ceramicnetwork/js-ceramic:5.16.0
+        - image: ceramicnetwork/js-ceramic:6.4.0
           name: js-ceramic-dev
           command: ["/bin/bash", "-c"]
           args:
@@ -51,10 +51,10 @@ spec:
               name: http-api
           resources:
             limits:
-              cpu: "0.7"
+              cpu: 2
               memory: 4Gi
             requests:
-              cpu: "0.6"
+              cpu: 1
               memory: 4Gi
           # # restart pod after failureThreshold*periodSeconds total seconds
           livenessProbe:
diff --git a/ceramic-k8s/ceramic_deployment_prod.yaml b/ceramic-k8s/ceramic_deployment_prod.yaml
index 376b6a0d6..fd8b64d5a 100644
--- a/ceramic-k8s/ceramic_deployment_prod.yaml
+++ b/ceramic-k8s/ceramic_deployment_prod.yaml
@@ -53,7 +53,7 @@ spec:
         vault.hashicorp.com/agent-inject-secret-config: secrets/desci-server/production/db
         vault.hashicorp.com/agent-inject-template-config: |
           {{- with secret "secrets/desci-server/production/db" -}}
-          echo "{\"anchor\":{\"auth-method\":\"did\",\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"node\":{\"privateSeedUrl\":\"inplace:ed25519#{{ .Data.ceramic_cas_pkey }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-prod-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"metrics-exporter-enabled\":false,\"metrics-port\":9090},\"network\":{\"name\":\"mainnet\"},\"state-store\":{\"mode\":\"fs\",\"local-directory\":\"/root/.ceramic/statestore\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"models\":[]}}" > daemon.config.json
+          echo "{\"anchor\":{\"auth-method\":\"did\",\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"node\":{\"privateSeedUrl\":\"inplace:ed25519#{{ .Data.ceramic_cas_pkey }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-prod-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"mainnet\"},\"state-store\":{\"mode\":\"fs\",\"local-directory\":\"/root/.ceramic/statestore\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
           export NODE_ENV=production
           export CERAMIC_PUBSUB_QPS_LIMIT=500
           echo "envset"; 
@@ -62,7 +62,7 @@ spec:
         App: JsCeramicProd
     spec:
       containers:
-        - image: ceramicnetwork/js-ceramic:5.16.0
+        - image: ceramicnetwork/js-ceramic:6.4.0
           name: js-ceramic-prod
           command: ["/bin/bash", "-c"]
           volumeMounts:
@@ -75,10 +75,10 @@ spec:
               name: http-api
           resources:
             limits:
-              cpu: "0.7"
+              cpu: 2
               memory: 4Gi
             requests:
-              cpu: "0.6"
+              cpu: 1
               memory: 4Gi
           # # restart pod after failureThreshold*periodSeconds total seconds
           livenessProbe:

From ea75555d600863958dc7ff035dcd7b5281fd7b3b Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 17 Sep 2024 16:13:39 +0200
Subject: [PATCH 20/81] ceramic: fix accidental lowercasing of dev config

---
 ceramic-k8s/ceramic_deployment_dev.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ceramic-k8s/ceramic_deployment_dev.yaml b/ceramic-k8s/ceramic_deployment_dev.yaml
index c18556a28..3463b4c8b 100644
--- a/ceramic-k8s/ceramic_deployment_dev.yaml
+++ b/ceramic-k8s/ceramic_deployment_dev.yaml
@@ -32,7 +32,7 @@ spec:
 
           {{- end -}}
           {{- with secret "secrets/desci-server/dev/db" -}}
-          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6mktbkjrmnhvj37qfto12911ycm2jukduzwhdvetu9s5a9t\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
+          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
           export NODE_ENV=production
           export CERAMIC_PUBSUB_QPS_LIMIT=500
           echo "envset"; 

From 98e96e8f6b6f49c0c5ec71e49168725a50d81309 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Tue, 17 Sep 2024 19:39:33 +0000
Subject: [PATCH 21/81] field autocomplete fixed

---
 desci-server/src/controllers/search/query.ts      | 2 +-
 desci-server/src/services/ElasticSearchService.ts | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/desci-server/src/controllers/search/query.ts b/desci-server/src/controllers/search/query.ts
index e8b292efe..5bbfb05ac 100644
--- a/desci-server/src/controllers/search/query.ts
+++ b/desci-server/src/controllers/search/query.ts
@@ -73,7 +73,7 @@ export const singleQuery = async (
   }
 
   if (entity === 'fields') {
-    searchEntity = 'subfields'; // Overwrite as fields are accessible via 'topics' index
+    searchEntity = 'subfields'; // Overwrite as fields are accessible via 'subfields' index
     logger.info(
       { entity, searchEntity },
       `Entity provided is '${entity}', overwriting with '${searchEntity}' because ${entity} is accessible in that index.`,
diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index ea157334e..95488b02c 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -32,7 +32,7 @@ export const RELEVANT_FIELDS = {
   works: ['title', 'abstract'],
   authors: ['display_name', 'orcid', 'last_known_institution', 'authors.affiliation'],
   topics: ['display_name'],
-  subfields: ['subfield_display_name'],
+  fields: ['subfield_display_name'],
   concepts: ['display_name'],
   sources: ['display_name', 'publisher', 'issn_l', 'issn'],
   autocomplete_full: ['title', 'publisher', 'primary_id'],
@@ -262,7 +262,7 @@ function getRelevantFields(entity: string) {
   if (entity === 'authors') return RELEVANT_FIELDS.authors;
   if (entity === 'topics') return RELEVANT_FIELDS.topics;
   if (entity === 'concepts') return RELEVANT_FIELDS.concepts;
-  if (entity === 'subfields') return RELEVANT_FIELDS.subfields;
+  if (entity === 'fields') return RELEVANT_FIELDS.fields;
   if (entity === 'institutions') return RELEVANT_FIELDS.institutions;
   if (entity === 'sources') return RELEVANT_FIELDS.sources;
   if (entity === 'autocomplete_full') return RELEVANT_FIELDS.autocomplete_full;

From 0bd0a96671940852da1ca8fbb0ad2f10b04c889b Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Wed, 18 Sep 2024 16:51:29 +0200
Subject: [PATCH 22/81] ceramic: turn off historical sync

---
 ceramic-k8s/ceramic_deployment_dev.yaml  | 2 +-
 ceramic-k8s/ceramic_deployment_prod.yaml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/ceramic-k8s/ceramic_deployment_dev.yaml b/ceramic-k8s/ceramic_deployment_dev.yaml
index 3463b4c8b..58946e7ec 100644
--- a/ceramic-k8s/ceramic_deployment_dev.yaml
+++ b/ceramic-k8s/ceramic_deployment_dev.yaml
@@ -32,7 +32,7 @@ spec:
 
           {{- end -}}
           {{- with secret "secrets/desci-server/dev/db" -}}
-          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
+          echo "{\"anchor\":{\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-dev-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"testnet-clay\"},\"node\":{},\"state-store\":{\"mode\":\"s3\",\"s3-bucket\":\"ceramic-node-dev-prime2\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true}}" > daemon.config.json
           export NODE_ENV=production
           export CERAMIC_PUBSUB_QPS_LIMIT=500
           echo "envset"; 
diff --git a/ceramic-k8s/ceramic_deployment_prod.yaml b/ceramic-k8s/ceramic_deployment_prod.yaml
index fd8b64d5a..ce84fecec 100644
--- a/ceramic-k8s/ceramic_deployment_prod.yaml
+++ b/ceramic-k8s/ceramic_deployment_prod.yaml
@@ -53,7 +53,7 @@ spec:
         vault.hashicorp.com/agent-inject-secret-config: secrets/desci-server/production/db
         vault.hashicorp.com/agent-inject-template-config: |
           {{- with secret "secrets/desci-server/production/db" -}}
-          echo "{\"anchor\":{\"auth-method\":\"did\",\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"node\":{\"privateSeedUrl\":\"inplace:ed25519#{{ .Data.ceramic_cas_pkey }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-prod-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"mainnet\"},\"state-store\":{\"mode\":\"fs\",\"local-directory\":\"/root/.ceramic/statestore\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true,\"enable-historical-sync\":true}}" > daemon.config.json
+          echo "{\"anchor\":{\"auth-method\":\"did\",\"ethereum-rpc-url\":\"{{ .Data.ceramic_rpc }}\"},\"node\":{\"privateSeedUrl\":\"inplace:ed25519#{{ .Data.ceramic_cas_pkey }}\"},\"http-api\":{\"cors-allowed-origins\":[\".*\"],\"admin-dids\":[\"did:key:z6MktbKJrMnhVJ37QFTo12911ycm2juKDUzWHDVETu9s5a9T\"]},\"ipfs\":{\"mode\":\"remote\",\"host\":\"http://public-ceramic-ipfs-prod-service-internal.default.svc.cluster.local:5001\"},\"logger\":{\"log-level\":0},\"metrics\":{\"prometheus-exporter-enabled\":true,\"prometheus-exporter-port\":9464},\"network\":{\"name\":\"mainnet\"},\"state-store\":{\"mode\":\"fs\",\"local-directory\":\"/root/.ceramic/statestore\"},\"indexing\":{\"db\":\"{{ .Data.ceramic_url }}\",\"allow-queries-before-historical-sync\":true}}" > daemon.config.json
           export NODE_ENV=production
           export CERAMIC_PUBSUB_QPS_LIMIT=500
           echo "envset"; 

From 8f6980413adad97b44cad183385facd7b91e2b81 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Wed, 18 Sep 2024 16:51:58 +0200
Subject: [PATCH 23/81] contracts: add final alias registry migration logs

---
 ...nc_prod_Wed,_11_Sep_2024_12:38:13_GMT.json | 3683 ++++++++++++++++
 ...nc_prod_Wed,_18_Sep_2024_13:04:23_GMT.json | 3716 +++++++++++++++++
 2 files changed, 7399 insertions(+)
 create mode 100644 desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_11_Sep_2024_12:38:13_GMT.json
 create mode 100644 desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_18_Sep_2024_13:04:23_GMT.json

diff --git a/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_11_Sep_2024_12:38:13_GMT.json b/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_11_Sep_2024_12:38:13_GMT.json
new file mode 100644
index 000000000..924a7a08c
--- /dev/null
+++ b/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_11_Sep_2024_12:38:13_GMT.json
@@ -0,0 +1,3683 @@
+[
+  {
+    "dpid": "0",
+    "owner": "0xF0C6957a0CaFf18D4a18E1CE99b769d20026685e",
+    "versions": [
+      {
+        "cid": "bafkreie2idd2yuwibppujafgtfc6cczopht4q47y563q4paml2me2dsh6y",
+        "time": 1675737468
+      }
+    ],
+    "validationError": false
+  },
+  {
+    "dpid": "1",
+    "owner": "0xF0C6957a0CaFf18D4a18E1CE99b769d20026685e",
+    "versions": [
+      {
+        "cid": "bafkreigbp7bahnrxujbz5uu3j6hzmyimq7wijkucwyi4bc5tbvka5xw3wq",
+        "time": 1675781796
+      },
+      {
+        "cid": "bafkreigwzsizb76b62ln5xnhhqeypxhyqwwyp56zcprl52siut2q7h2lky",
+        "time": 1682818404
+      },
+      {
+        "cid": "bafkreigwzsizb76b62ln5xnhhqeypxhyqwwyp56zcprl52siut2q7h2lky",
+        "time": 1682818608
+      }
+    ],
+    "validationError": false
+  },
+  {
+    "dpid": "2",
+    "owner": "0xF0C6957a0CaFf18D4a18E1CE99b769d20026685e",
+    "versions": [
+      {
+        "cid": "bafkreihlsxjw3gzrikm2att6sd2yty4qx37z3fgmzokrm6fd3oony2qqby",
+        "time": 1676095440
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+        "time": 1725977220
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+    ],
+    "validationError": false
+  }
+]
\ No newline at end of file
diff --git a/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_18_Sep_2024_13:04:23_GMT.json b/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_18_Sep_2024_13:04:23_GMT.json
new file mode 100644
index 000000000..32db70ff1
--- /dev/null
+++ b/desci-contracts/migration-data/aliasRegistrySync_prod_Wed,_18_Sep_2024_13:04:23_GMT.json
@@ -0,0 +1,3716 @@
+[
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+]
\ No newline at end of file

From c79fd02cc061148fad02c0bbf994568c79f2651e Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Thu, 19 Sep 2024 12:40:13 +0000
Subject: [PATCH 24/81] adjust term query, support nested vals

---
 desci-server/src/controllers/search/types.ts  |  2 +-
 .../src/services/ElasticSearchService.ts      | 26 +++++++++++++++----
 2 files changed, 22 insertions(+), 6 deletions(-)

diff --git a/desci-server/src/controllers/search/types.ts b/desci-server/src/controllers/search/types.ts
index 1bdcf4ac3..6d565f6bd 100644
--- a/desci-server/src/controllers/search/types.ts
+++ b/desci-server/src/controllers/search/types.ts
@@ -16,7 +16,7 @@ export type Filter = {
   fuzziness?: number | 'AUTO';
 } & (
   | { type: 'range'; operator: ComparisonOperator; value: number | string }
-  | { type: 'term'; value: string | number | boolean }
+  | { type: 'term'; value: string | number | boolean | string[] }
   | { type: 'match'; value: string; matchLogic?: MatchLogic; fuzziness?: number | 'AUTO' }
   | { type: 'match_phrase'; value: string | string[]; matchLogic?: MatchLogic }
   | { type: 'exists' }
diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 95488b02c..492369b8f 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -191,11 +191,27 @@ function buildFilter(filter: Filter) {
         },
       };
     case 'term':
-      return {
-        term: {
-          [filter.field]: filter.value,
-        },
-      };
+      const termFieldParts = filter.field.split('.');
+      const isNested = termFieldParts.length > 1;
+      const queryType = Array.isArray(filter.value) ? 'terms' : 'term';
+      let valFormatted = filter.value;
+      if (Array.isArray(valFormatted)) {
+        valFormatted = valFormatted.map((v) => (typeof v === 'string' ? v.toLowerCase() : v));
+      } else if (typeof valFormatted === 'string') {
+        valFormatted = valFormatted.toLowerCase();
+      }
+
+      const query = { [queryType]: { [filter.field]: valFormatted } };
+
+      if (isNested) {
+        return {
+          nested: {
+            path: termFieldParts[0],
+            query: query,
+          },
+        };
+      }
+      return query;
     case 'match_phrase':
       if (Array.isArray(filter.value)) {
         const queries = filter.value.map((value) => ({

From 9e9a39fc0cf676878a6482f5de8968aaaf830b5c Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Thu, 19 Sep 2024 17:32:34 +0200
Subject: [PATCH 25/81] nodes-lib: override DID EIP155 namespace in SIWE
 message to match stream controller

---
 nodes-lib/package.json        |  4 ++--
 nodes-lib/src/codex.ts        | 25 +++++++++++++++++++++----
 nodes-lib/src/util/signing.ts |  4 +++-
 3 files changed, 26 insertions(+), 7 deletions(-)

diff --git a/nodes-lib/package.json b/nodes-lib/package.json
index bd3d3d739..1debe7631 100644
--- a/nodes-lib/package.json
+++ b/nodes-lib/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@desci-labs/nodes-lib",
-  "version": "0.0.10",
+  "version": "0.0.11-rc1",
   "homepage": "https://github.com/desci-labs/nodes#readme",
   "description": "Stand-alone client library for interacting with desci-server",
   "repository": {
@@ -49,4 +49,4 @@
     "vitest": "^1.2.1",
     "vitest-github-actions-reporter": "^0.11.1"
   }
-}
+}
\ No newline at end of file
diff --git a/nodes-lib/src/codex.ts b/nodes-lib/src/codex.ts
index 848f589ba..6a34fe296 100644
--- a/nodes-lib/src/codex.ts
+++ b/nodes-lib/src/codex.ts
@@ -40,20 +40,37 @@ export const codexPublish = async (
   const ceramic = newCeramicClient(nodeUrl);
   const compose = newComposeClient({ ceramic });
 
+  const existingStreamID = prepublishResult.ceramicStream;
+
+  let controller: string | undefined;
+  let controllerChainID: string | undefined;
+  if (existingStreamID) {
+    const stream = await ceramic.loadStream(existingStreamID);
+    controller = stream.state.metadata.controllers[0];
+    controllerChainID = controller.match(/eip155:(\d+):/)?.[1]
+  };
+
   if (didOrSigner instanceof Signer) {
     compose.setDID(
       // Wrangle a DID out of the signer for Ceramic auth
-      await authorizedSessionDidFromSigner(didOrSigner, compose.resources)
+      await authorizedSessionDidFromSigner(didOrSigner, compose.resources, controllerChainID)
     );
   } else {
+  // NOTE: for a signer we can check and pass the controller EIP155 chainID, but we can't edit that if it's a preauthorized DID
+    if (didOrSigner.parent !== controller) {
+      console.warn(
+        `[nodes-lib::codex] DID and controller mismatch, is the chainID set correctly?`,
+        { didParent: didOrSigner.parent, streamController: controller },
+      );
+    };
     compose.setDID(didOrSigner);
   };
 
   // If we know about a stream already, let's assume we backfilled it initially
-  if (prepublishResult.ceramicStream) {
-    console.log(LOG_CTX, `publishing to known stream ${prepublishResult.ceramicStream}...`);
+  if (existingStreamID) {
+    console.log(LOG_CTX, `publishing to known stream ${existingStreamID}...`);
     const ro = await updateResearchObject(compose, {
-      id: prepublishResult.ceramicStream,
+      id: existingStreamID,
       title: prepublishResult.updatedManifest.title,
       manifest: prepublishResult.updatedManifestCid,
     });
diff --git a/nodes-lib/src/util/signing.ts b/nodes-lib/src/util/signing.ts
index bd193e6f8..333f5dd8b 100644
--- a/nodes-lib/src/util/signing.ts
+++ b/nodes-lib/src/util/signing.ts
@@ -66,6 +66,8 @@ const getManualSignatureAuthMethod = (
 export const authorizedSessionDidFromSigner = async (
   signer: Signer,
   resources: string[],
+  /** Force a particular chainID to match controller EIP155 prefix in `dids:validateJWS` */
+  chainIdOverride?: string,
 ) => {
   // Fuckery to get the inner provider for a metamask signer
   const externalProvider = (signer.provider as providers.Web3Provider)?.provider;
@@ -74,7 +76,7 @@ export const authorizedSessionDidFromSigner = async (
 
   const address = await signer.getAddress();
   const network = await jsonRpcProvider.getNetwork();
-  const chainId = `eip155:${network.chainId}`;
+  const chainId = `eip155:${chainIdOverride ?? network.chainId}`;
   const caipAccountId = new AccountId({ address, chainId });
 
   let authMethod: AuthMethod;

From b00e1d81672d00a4f96c6be5d1053855bc221097 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Fri, 20 Sep 2024 00:34:15 +0200
Subject: [PATCH 26/81] adjust resourcing for repo

---
 desci-repo/kubernetes/deployment_dev.yaml  | 2 +-
 desci-repo/kubernetes/deployment_prod.yaml | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/desci-repo/kubernetes/deployment_dev.yaml b/desci-repo/kubernetes/deployment_dev.yaml
index 376fb2588..da90a38c1 100644
--- a/desci-repo/kubernetes/deployment_dev.yaml
+++ b/desci-repo/kubernetes/deployment_dev.yaml
@@ -67,7 +67,7 @@ spec:
               name: ws-api
           resources:
             limits:
-              cpu: '2'
+              cpu: '4'
               memory: 16Gi
             requests:
               cpu: '1'
diff --git a/desci-repo/kubernetes/deployment_prod.yaml b/desci-repo/kubernetes/deployment_prod.yaml
index a48e23ca7..799d505d6 100755
--- a/desci-repo/kubernetes/deployment_prod.yaml
+++ b/desci-repo/kubernetes/deployment_prod.yaml
@@ -68,9 +68,9 @@ spec:
               name: ws-api
           resources:
             limits:
-              cpu: '2'
+              cpu: '4'
               memory: 16Gi
             requests:
-              cpu: '1'
+              cpu: '2'
               memory: 8Gi
       serviceAccountName: 'vault-auth'

From d3c4daa637f401280acd1d0fdb1a8191ec53a7c4 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Fri, 20 Sep 2024 20:52:29 +0000
Subject: [PATCH 27/81] fix check on nested fields for filtering

---
 .../src/services/ElasticSearchService.ts      | 33 ++++++++++++-------
 1 file changed, 22 insertions(+), 11 deletions(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 492369b8f..100732aa3 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -61,6 +61,8 @@ export const RELEVANT_FIELDS = {
   ],
 };
 
+const NESTED_WORKS_ENTITIES = ['authors', 'best_locations', 'concepts', 'locations', 'topics', 'sources'];
+
 type SortOrder = 'asc' | 'desc';
 type SortField = { [field: string]: { order: SortOrder; missing?: string | number; type?: string; script?: any } };
 
@@ -192,7 +194,7 @@ function buildFilter(filter: Filter) {
       };
     case 'term':
       const termFieldParts = filter.field.split('.');
-      const isNested = termFieldParts.length > 1;
+      const isNested = NESTED_WORKS_ENTITIES.includes(termFieldParts[0]);
       const queryType = Array.isArray(filter.value) ? 'terms' : 'term';
       let valFormatted = filter.value;
       if (Array.isArray(valFormatted)) {
@@ -213,15 +215,24 @@ function buildFilter(filter: Filter) {
       }
       return query;
     case 'match_phrase':
+      const fieldParts = filter.field.split('.');
+      const isNestedMatchPhrase = NESTED_WORKS_ENTITIES.includes(fieldParts[0]);
+
       if (Array.isArray(filter.value)) {
-        const queries = filter.value.map((value) => ({
-          nested: {
-            path: filter.field.split('.')[0],
-            query: {
-              match_phrase: { [filter.field]: { query: value, analyzer: 'edge_ngram_analyzer' } },
-            },
-          },
-        }));
+        const queries = filter.value.map((value) => {
+          if (isNestedMatchPhrase) {
+            return {
+              nested: {
+                path: fieldParts[0],
+                query: {
+                  match_phrase: { [filter.field]: { query: value, analyzer: 'edge_ngram_analyzer' } },
+                },
+              },
+            };
+          } else {
+            return { match_phrase: { [filter.field]: { query: value, analyzer: 'edge_ngram_analyzer' } } };
+          }
+        });
 
         return {
           bool: {
@@ -231,8 +242,7 @@ function buildFilter(filter: Filter) {
         };
       }
 
-      const fieldParts = filter.field.split('.');
-      if (fieldParts.length > 1) {
+      if (isNestedMatchPhrase) {
         return {
           nested: {
             path: fieldParts[0],
@@ -242,6 +252,7 @@ function buildFilter(filter: Filter) {
           },
         };
       }
+
       return { match_phrase: { [filter.field]: { query: filter.value, analyzer: 'edge_ngram_analyzer' } } };
     case 'match':
       const matchQuery = {

From 0137f4c887b05bc1fdd29aaf252da443298efec1 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Sat, 21 Sep 2024 01:23:30 -0500
Subject: [PATCH 28/81] add community control plane(admin) routes, control
 plane route data validation and schemas, controllers and implement
 createCommunity api

---
 .../controllers/admin/communities/index.ts    |  65 ++++++++++
 desci-server/src/core/ApiResponse.ts          |   9 +-
 desci-server/src/middleware/validator.ts      |   3 +-
 desci-server/src/routes/v1/admin.ts           |  18 ---
 .../src/routes/v1/admin/communities/index.ts  | 113 ++++++++++++++++++
 .../src/routes/v1/admin/communities/schema.ts |  66 ++++++++++
 desci-server/src/routes/v1/admin/index.ts     |  22 ++++
 desci-server/src/routes/v1/index.ts           |   2 +-
 desci-server/src/services/Communities.ts      |  18 ++-
 desci-server/src/services/data/processing.ts  |  35 +++++-
 desci-server/src/types/ProcessEnv.d.ts        |   1 +
 11 files changed, 327 insertions(+), 25 deletions(-)
 create mode 100644 desci-server/src/controllers/admin/communities/index.ts
 delete mode 100644 desci-server/src/routes/v1/admin.ts
 create mode 100644 desci-server/src/routes/v1/admin/communities/index.ts
 create mode 100644 desci-server/src/routes/v1/admin/communities/schema.ts
 create mode 100644 desci-server/src/routes/v1/admin/index.ts

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
new file mode 100644
index 000000000..eab4bb6bd
--- /dev/null
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -0,0 +1,65 @@
+import { NextFunction, Request, Response } from 'express';
+import { z } from 'zod';
+
+import {
+  asyncMap,
+  BadRequestError,
+  communityService,
+  logger as parentLogger,
+  SuccessMessageResponse,
+  SuccessResponse,
+} from '../../../internal.js';
+import { addCommunitySchema } from '../../../routes/v1/admin/communities/schema.js';
+import { processUploadToIpfs } from '../../../services/data/processing.js';
+
+const logger = parentLogger.child({ module: 'Admin/Communities/controller' });
+
+export const todoApi = async (_req: Request, res: Response, next: NextFunction) => {
+  new SuccessMessageResponse().send(res);
+};
+
+export const createCommunity = async (req: Request, res: Response, _next: NextFunction) => {
+  const body = req.body as Required<z.infer<typeof addCommunitySchema>['body']>;
+
+  let assets: { key: string; url: string }[];
+  if (req.files) {
+    let uploads = Array.isArray(req.files) ? req.files : Object.values(req.files).map((files) => files[0]);
+    uploads = uploads.map((file) => {
+      file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
+      return file;
+    });
+    const { ok, value } = await processUploadToIpfs({ files: uploads });
+    if (ok) {
+      assets = value.map((ipfsImg) => ({
+        key: ipfsImg.path,
+        url: `${process.env.IPFS_RESOLVER_OVERRIDE}/${ipfsImg.cid}`,
+      }));
+    } else {
+      throw new BadRequestError('Could not upload file to ipfs');
+    }
+  }
+
+  const image_url = body.imageUrl || assets.find((img) => img.key.toLowerCase().includes('imageurl'))?.url;
+  delete body.imageUrl;
+
+  if (!image_url) throw new BadRequestError('No community logo uploaded');
+
+  // logger.info({ ...body, image_url }, 'payload');
+  const community = await communityService.createCommunity({ ...body, image_url });
+  new SuccessResponse(community).send(res);
+};
+
+export const listAllCommunities = async (_req: Request, res: Response, next: NextFunction) => {
+  const communities = await communityService.adminGetCommunities();
+  logger.info({ communities }, 'List communities');
+  const data = await asyncMap(communities, async (community) => {
+    const engagements = await communityService.getCommunityEngagementSignals(community.id);
+    const verifiedEngagements = await communityService.getCommunityRadarEngagementSignal(community.id);
+    return {
+      ...community,
+      engagements,
+      verifiedEngagements,
+    };
+  });
+  new SuccessResponse(data).send(res);
+};
diff --git a/desci-server/src/core/ApiResponse.ts b/desci-server/src/core/ApiResponse.ts
index 82a192182..238621108 100644
--- a/desci-server/src/core/ApiResponse.ts
+++ b/desci-server/src/core/ApiResponse.ts
@@ -1,5 +1,7 @@
 import { Response } from 'express';
 
+import { logger } from '../logger.js';
+
 enum ResponseStatus {
   SUCCESS = 200,
   BAD_REQUEST = 400,
@@ -24,7 +26,8 @@ export abstract class ApiResponse {
 
   protected prepare<T extends ApiResponse>(res: Response, response: T, headers: { [key: string]: string }): Response {
     for (const [key, value] of Object.entries(headers)) res.append(key, value);
-    return res.status(this.status).json(ApiResponse.sanitize(response));
+    const data = ApiResponse.sanitize(response);
+    return data ? res.status(this.status).json(data) : res.status(this.status).send();
   }
 
   public send(res: Response, headers: Headers = {}): Response {
@@ -35,8 +38,8 @@ export abstract class ApiResponse {
     const clone: T = {} as T;
     Object.assign(clone, response);
     delete clone.status;
-    for (const field in clone) if (clone[field] === 'undefined') delete clone[field];
-    // if (!clone['message']) delete clone.message;
+    for (const field in clone) if (!clone[field]) delete clone[field];
+    if (Object.keys(clone).length === 0) return undefined;
     return clone;
   }
 }
diff --git a/desci-server/src/middleware/validator.ts b/desci-server/src/middleware/validator.ts
index 2acafc15e..88b6a1f4f 100644
--- a/desci-server/src/middleware/validator.ts
+++ b/desci-server/src/middleware/validator.ts
@@ -1,7 +1,7 @@
 import { NextFunction, Request, Response } from 'express';
 import { ZodError, z } from 'zod';
 
-import { BadRequestError, InternalError, asyncHandler } from '../internal.js';
+import { BadRequestError, InternalError, asyncHandler, logger } from '../internal.js';
 
 export const validate = <T extends z.ZodRawShape>(schema: z.ZodObject<T>) =>
   asyncHandler(async (req: Request, res: Response, next: NextFunction) => {
@@ -9,6 +9,7 @@ export const validate = <T extends z.ZodRawShape>(schema: z.ZodObject<T>) =>
       await schema.parseAsync(req);
       next();
     } catch (err) {
+      // logger.error({ body: req.body, file: req.file }, 'zod validator');
       if (err instanceof ZodError) {
         console.log('Error', err);
         throw new BadRequestError(
diff --git a/desci-server/src/routes/v1/admin.ts b/desci-server/src/routes/v1/admin.ts
deleted file mode 100644
index 35b3c37a5..000000000
--- a/desci-server/src/routes/v1/admin.ts
+++ /dev/null
@@ -1,18 +0,0 @@
-import { Router } from 'express';
-
-import { createCsv, getAnalytics } from '../../controllers/admin/analytics.js';
-import { debugAllNodesHandler, debugNodeHandler } from '../../controllers/admin/debug.js';
-import { listDoiRecords } from '../../internal.js';
-import { ensureAdmin } from '../../middleware/ensureAdmin.js';
-import { ensureUser } from '../../middleware/permissions.js';
-
-const router = Router();
-
-router.get('/analytics', [ensureUser, ensureAdmin], getAnalytics);
-router.get('/analytics/csv', [ensureUser, ensureAdmin], createCsv);
-router.get('/doi/list', [ensureUser, ensureAdmin], listDoiRecords);
-
-router.get('/debug', [ensureUser, ensureAdmin], debugAllNodesHandler);
-router.get('/debug/:uuid', [ensureUser, ensureAdmin], debugNodeHandler);
-
-export default router;
diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
new file mode 100644
index 000000000..9d179c1e6
--- /dev/null
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -0,0 +1,113 @@
+import { NextFunction, Response, Router } from 'express';
+import { Request } from 'express';
+import multer from 'multer';
+import multerS3 from 'multer-s3';
+
+import { createCommunity, listAllCommunities, todoApi } from '../../../../controllers/admin/communities/index.js';
+import { asyncHandler, ensureAdmin, ensureUser, logger as parentLogger, validate } from '../../../../internal.js';
+import { isS3Configured, s3Client } from '../../../../services/s3.js';
+
+import {
+  addAttestationSchema,
+  addCommunitySchema,
+  addEntryAttestationSchema,
+  addMemberSchema,
+  removeEntryAttestationSchema,
+  removeMemberSchema,
+} from './schema.js';
+
+const logger = parentLogger.child({ module: 'Admin/communities' });
+const router = Router();
+
+const upload = isS3Configured
+  ? multer({
+      preservePath: true,
+      storage: multerS3({
+        s3: s3Client,
+        bucket: process.env.AWS_S3_BUCKET_NAME,
+        key: (req, file, cb) => {
+          // const userId = (req as any).user.id;
+          const { name, communitySlug } = (req as any).body;
+          if (!name || !name) {
+            cb(new Error('Missing required params to form key'));
+          }
+          const key = `${communitySlug}${name ? +'/' + name : ''}/${file.filename}`; // adjust for dir uploads, doesn't start with '/'
+          logger.info({ fileName: key }, 'Upload asset');
+          cb(null, key);
+        },
+      }),
+    })
+  : multer({ preservePath: true });
+
+const uploadHandler = upload.fields([{ name: 'imageUrl', maxCount: 1 }, { name: 'verifiedImageUrl' }]);
+
+const wrappedHandler = (req: Request, res: Response, next: NextFunction) => {
+  uploadHandler(req, res, (err) => {
+    if (err) {
+      if (err instanceof multer.MulterError) {
+        throw err;
+      } else {
+        logger.error({ err }, 'Upload Handler Error encountered');
+        res.status(401).send({ msg: 'unauthorized' });
+        return;
+      }
+    }
+    next();
+  });
+};
+
+const sanitizeBody = async (req: Request, _res: Response, next: NextFunction) => {
+  logger.info({ body: req.body }, 'sanitizeBody');
+  req.body?.keywords ? (req.body.keywords = JSON.parse(req.body.keywords)) : null;
+  req.body?.links ? (req.body.links = JSON.parse(req.body.links)) : null;
+  next();
+};
+
+router.get('/', [ensureUser, ensureAdmin], asyncHandler(listAllCommunities));
+
+// todo: api to create desci community
+router.post(
+  '/',
+  [ensureUser, ensureAdmin, /* upload.single('image'),*/ wrappedHandler, sanitizeBody, validate(addCommunitySchema)],
+  asyncHandler(createCommunity),
+);
+
+// todo: api to update desci community
+router.post(
+  ':communityId/',
+  [ensureUser, ensureAdmin, validate(addCommunitySchema), wrappedHandler],
+  asyncHandler(todoApi),
+);
+
+// todo: api to create attestation for desci community ( with option to add it as an entryAttestation)
+router.post(
+  ':communityId/attestations',
+  [ensureUser, ensureAdmin, validate(addAttestationSchema), wrappedHandler],
+  asyncHandler(todoApi),
+);
+
+// todo: api to add a desci community member
+router.post(':communityId/members', [ensureUser, ensureAdmin, validate(addMemberSchema)], asyncHandler(todoApi));
+
+// todo: api to remove a desci community member
+router.delete(
+  ':communityId/members/:memberId',
+  [ensureUser, ensureAdmin, validate(removeMemberSchema)],
+  asyncHandler(todoApi),
+);
+
+// todo: api to link attestation to community (this adds it to the communityEntryAttestation)
+router.post(
+  ':communityId/addEntryAttestation',
+  [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],
+  asyncHandler(todoApi),
+);
+
+// todo: api to remove attestation as required in for community (remove communityEntryAttestation)
+router.post(
+  ':communityId/removeEntryAttestation',
+  [ensureUser, ensureAdmin, validate(removeEntryAttestationSchema)],
+  asyncHandler(todoApi),
+);
+
+export default router;
diff --git a/desci-server/src/routes/v1/admin/communities/schema.ts b/desci-server/src/routes/v1/admin/communities/schema.ts
new file mode 100644
index 000000000..8d9480eef
--- /dev/null
+++ b/desci-server/src/routes/v1/admin/communities/schema.ts
@@ -0,0 +1,66 @@
+import { CommunityMembershipRole } from '@prisma/client';
+import { z } from 'zod';
+
+export const addCommunitySchema = z.object({
+  body: z.object({
+    name: z.string(),
+    subtitle: z.string().min(1, 'Subtitle cannot be empty'),
+    description: z.string().min(1, 'Description cannot be empty'),
+    hidden: z.boolean().default(false),
+    keywords: z.array(z.string()).min(1, 'Community must have at least one keyword'),
+    imageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
+    slug: z.string().min(3),
+    links: z.array(z.string().url()),
+  }),
+});
+
+export const addAttestationSchema = z.object({
+  params: z.object({
+    communityId: z.coerce.number(),
+  }),
+  body: z.object({
+    name: z.string(),
+    communitySlug: z.string(),
+    description: z.string(),
+    imageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
+    verifiedImageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
+    protected: z.boolean().default(false),
+  }),
+});
+
+export const addMemberSchema = z.object({
+  params: z.object({
+    communityId: z.coerce.number(),
+  }),
+  body: z.object({
+    userId: z.coerce.number(),
+    role: z.enum([CommunityMembershipRole.ADMIN, CommunityMembershipRole.MEMBER]),
+  }),
+});
+
+export const removeMemberSchema = z.object({
+  params: z.object({
+    communityId: z.coerce.number(),
+  }),
+  body: z.object({
+    memberId: z.coerce.number(),
+  }),
+});
+
+export const addEntryAttestationSchema = z.object({
+  params: z.object({
+    communityId: z.coerce.number(),
+  }),
+  body: z.object({
+    attestationId: z.coerce.number(),
+  }),
+});
+
+export const removeEntryAttestationSchema = z.object({
+  params: z.object({
+    communityId: z.coerce.number(),
+  }),
+  body: z.object({
+    attestationId: z.coerce.number(),
+  }),
+});
diff --git a/desci-server/src/routes/v1/admin/index.ts b/desci-server/src/routes/v1/admin/index.ts
new file mode 100644
index 000000000..561a9e111
--- /dev/null
+++ b/desci-server/src/routes/v1/admin/index.ts
@@ -0,0 +1,22 @@
+import { Router } from 'express';
+
+import { createCsv, getAnalytics } from '../../../controllers/admin/analytics.js';
+import { debugAllNodesHandler, debugNodeHandler } from '../../../controllers/admin/debug.js';
+import { listDoiRecords } from '../../../internal.js';
+import { ensureAdmin } from '../../../middleware/ensureAdmin.js';
+import { ensureUser } from '../../../middleware/permissions.js';
+
+import communities from './communities/index.js';
+
+const router = Router();
+
+router.get('/analytics', [ensureUser, ensureAdmin], getAnalytics);
+router.get('/analytics/csv', [ensureUser, ensureAdmin], createCsv);
+router.get('/doi/list', [ensureUser, ensureAdmin], listDoiRecords);
+
+router.get('/debug', [ensureUser, ensureAdmin], debugAllNodesHandler);
+router.get('/debug/:uuid', [ensureUser, ensureAdmin], debugNodeHandler);
+
+router.use('/communities', [ensureUser, ensureAdmin], communities);
+
+export default router;
diff --git a/desci-server/src/routes/v1/index.ts b/desci-server/src/routes/v1/index.ts
index a87e0ebae..616777fc6 100755
--- a/desci-server/src/routes/v1/index.ts
+++ b/desci-server/src/routes/v1/index.ts
@@ -10,7 +10,7 @@ import { nft } from '../../controllers/raw/nft.js';
 import { asyncHandler } from '../../internal.js';
 import { ensureUser } from '../../middleware/permissions.js';
 
-import admin from './admin.js';
+import admin from './admin/index.js';
 import attestations from './attestations/index.js';
 import auth from './auth.js';
 import communities from './communities/index.js';
diff --git a/desci-server/src/services/Communities.ts b/desci-server/src/services/Communities.ts
index 8b3114251..f9fc29ea1 100644
--- a/desci-server/src/services/Communities.ts
+++ b/desci-server/src/services/Communities.ts
@@ -1,5 +1,5 @@
 import { Attestation, CommunityMembershipRole, NodeAttestation, NodeFeedItem, Prisma } from '@prisma/client';
-import _ from 'lodash';
+import _, { includes } from 'lodash';
 
 import { prisma } from '../client.js';
 import { DuplicateDataError, logger } from '../internal.js';
@@ -18,6 +18,22 @@ export class CommunityService {
     return community;
   }
 
+  async adminGetCommunities() {
+    return prisma.desciCommunity.findMany({
+      orderBy: { createdAt: 'asc' },
+      include: {
+        CommunityMember: {
+          select: { id: true, role: true, userId: true, user: { select: { name: true, userOrganizations: true } } },
+          orderBy: { role: 'asc' },
+        },
+        CommunityEntryAttestation: {
+          select: { id: true, attestationVersion: { select: { name: true, image_url: true } } },
+          orderBy: { createdAt: 'asc' },
+        },
+      },
+    });
+  }
+
   async getAllCommunities() {
     return prisma.desciCommunity.findMany({
       select: {
diff --git a/desci-server/src/services/data/processing.ts b/desci-server/src/services/data/processing.ts
index 254545b03..2b9454a69 100644
--- a/desci-server/src/services/data/processing.ts
+++ b/desci-server/src/services/data/processing.ts
@@ -348,7 +348,7 @@ export function extractRootDagCidFromManifest(manifest: ResearchObjectV1, manife
 }
 
 export async function getManifestFromNode(
-  node: { manifestUrl: string, cid?: string },
+  node: { manifestUrl: string; cid?: string },
   queryString?: string,
 ): Promise<{ manifest: ResearchObjectV1; manifestCid: string }> {
   // debugger;
@@ -748,3 +748,36 @@ export async function assignTypeMapInManifest(
     return manifest;
   }
 }
+
+/**
+ * Proccesses regular file uploads, pins S3 files to IPFS, adds them to the end of the context DAG node, creates data references for them and updates the manifest.
+ */
+export async function processUploadToIpfs({
+  files,
+}: {
+  files:
+    | {
+        [fieldname: string]: Express.Multer.File[];
+      }
+    | Express.Multer.File[];
+}): Promise<Either<IpfsPinnedResult[], ProcessingError>> {
+  let pinResult: IpfsPinnedResult[] = [];
+  try {
+    const uploads = Array.isArray(files) ? files : Object.values(files).map((files) => files[0]);
+    // Pin new files, add draftNodeTree entries
+    pinResult = await pinNewFiles(uploads, false);
+    if (pinResult) {
+      logger.info({ pinResult }, 'Files uploaded to Ipfs');
+    }
+
+    return {
+      ok: true,
+      value: pinResult,
+    };
+    // SUCCESS
+  } catch (error) {
+    logger.error({ error }, 'Error processing S3 data to IPFS');
+    const controlledErr = 'type' in error ? error : createUnhandledError(error);
+    return { ok: false, value: controlledErr };
+  }
+}
diff --git a/desci-server/src/types/ProcessEnv.d.ts b/desci-server/src/types/ProcessEnv.d.ts
index e7fe3592b..35ac96f86 100755
--- a/desci-server/src/types/ProcessEnv.d.ts
+++ b/desci-server/src/types/ProcessEnv.d.ts
@@ -20,5 +20,6 @@ declare namespace NodeJS {
     CROSSREF_API_KEY: string;
     AUTOMATED_METADATA_API: string;
     AUTOMATED_METADATA_API_KEY: string;
+    IPFS_RESOLVER_OVERRIDE: string;
   }
 }

From d498f8f54e7bdea0e538d2881e253cdc5a1ae6e2 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Mon, 23 Sep 2024 10:23:54 +0200
Subject: [PATCH 29/81] nodeslib: force sep eth chainid in CACAO unless
 overridden

---
 nodes-lib/package.json        | 2 +-
 nodes-lib/src/util/signing.ts | 4 +++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/nodes-lib/package.json b/nodes-lib/package.json
index 1debe7631..9964f222e 100644
--- a/nodes-lib/package.json
+++ b/nodes-lib/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@desci-labs/nodes-lib",
-  "version": "0.0.11-rc1",
+  "version": "0.0.11",
   "homepage": "https://github.com/desci-labs/nodes#readme",
   "description": "Stand-alone client library for interacting with desci-server",
   "repository": {
diff --git a/nodes-lib/src/util/signing.ts b/nodes-lib/src/util/signing.ts
index 333f5dd8b..c68642984 100644
--- a/nodes-lib/src/util/signing.ts
+++ b/nodes-lib/src/util/signing.ts
@@ -76,7 +76,9 @@ export const authorizedSessionDidFromSigner = async (
 
   const address = await signer.getAddress();
   const network = await jsonRpcProvider.getNetwork();
-  const chainId = `eip155:${chainIdOverride ?? network.chainId}`;
+  // Force sepolia chainID in CACAO to prevent segmenting the
+  // user's streams over AccountIDs with different chainIDs
+  const chainId = `eip155:${chainIdOverride ?? "11155111" }`;
   const caipAccountId = new AccountId({ address, chainId });
 
   let authMethod: AuthMethod;

From ae4275306e44c1eb895aed43434ae1dbfa0def5e Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 23 Sep 2024 04:06:16 -0500
Subject: [PATCH 30/81] clean up

---
 desci-server/src/controllers/admin/communities/index.ts | 1 -
 desci-server/src/core/ApiResponse.ts                    | 2 --
 2 files changed, 3 deletions(-)

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
index eab4bb6bd..ae46c523a 100644
--- a/desci-server/src/controllers/admin/communities/index.ts
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -44,7 +44,6 @@ export const createCommunity = async (req: Request, res: Response, _next: NextFu
 
   if (!image_url) throw new BadRequestError('No community logo uploaded');
 
-  // logger.info({ ...body, image_url }, 'payload');
   const community = await communityService.createCommunity({ ...body, image_url });
   new SuccessResponse(community).send(res);
 };
diff --git a/desci-server/src/core/ApiResponse.ts b/desci-server/src/core/ApiResponse.ts
index 238621108..bd81e30c7 100644
--- a/desci-server/src/core/ApiResponse.ts
+++ b/desci-server/src/core/ApiResponse.ts
@@ -1,7 +1,5 @@
 import { Response } from 'express';
 
-import { logger } from '../logger.js';
-
 enum ResponseStatus {
   SUCCESS = 200,
   BAD_REQUEST = 400,

From 2d6afe043ee5ea72ecfe84b1234ff57da7b80f53 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 23 Sep 2024 04:27:12 -0500
Subject: [PATCH 31/81] sanity check before attempting to retrieve automerge
 url doc

---
 desci-repo/src/controllers/nodes/documents.ts | 7 +------
 desci-server/src/services/repoService.ts      | 5 ++++-
 2 files changed, 5 insertions(+), 7 deletions(-)

diff --git a/desci-repo/src/controllers/nodes/documents.ts b/desci-repo/src/controllers/nodes/documents.ts
index 3a70577eb..0292f664c 100644
--- a/desci-repo/src/controllers/nodes/documents.ts
+++ b/desci-repo/src/controllers/nodes/documents.ts
@@ -59,18 +59,13 @@ export const createNodeDocument = async function (req: Request, res: Response) {
 export const getLatestNodeManifest = async function (req: Request, res: Response) {
   logger.info({ params: req.params }, 'START [getLatestNodeManifest]');
   try {
-    console.log('[getLatestNodeManifest]', req.params);
+    logger.info({ params: req.params }, '[getLatestNodeManifest]');
     if (!req.params.uuid) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
       return;
     }
 
     const { uuid } = req.params;
-
-    // const queryResult = await pool.query('SELECT * FROM nodes WHERE uuid = $1', [uuid]);
-    // console.log('user:', queryResult.rows[0]);
-
-    logger.info('[getLatestNodeManifest]', { uuid });
     const node = await findNodeByUuid(uuid);
     logger.trace('[getLatestNodeManifest::node]', { node });
 
diff --git a/desci-server/src/services/repoService.ts b/desci-server/src/services/repoService.ts
index 2c9a75557..9a6cdcb7c 100644
--- a/desci-server/src/services/repoService.ts
+++ b/desci-server/src/services/repoService.ts
@@ -85,12 +85,15 @@ class RepoService {
   }
 
   async getDraftDocument(arg: { uuid: NodeUuid }) {
+    if (!arg.uuid) {
+      logger.warn({ arg }, 'Attempt to retrieve draft manifest for empty UUID');
+      return null;
+    }
     logger.info({ arg }, 'Retrieve Draft Document');
     try {
       const response = await this.#client.get<ApiResponse<{ document: ResearchObjectDocument }>>(
         `${this.baseUrl}/v1/nodes/documents/draft/${arg.uuid}`,
       );
-      logger.info({ response: response.status }, 'Draft Retrieval Response');
       if (response.status === 200 && response.data.ok) {
         return response.data.document;
       } else {

From 4179629e1abb7cc8c57e956caad2e1dba1d32042 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 23 Sep 2024 07:32:12 -0500
Subject: [PATCH 32/81] implement community update api

---
 .../controllers/admin/communities/index.ts    | 69 +++++++++++++++++--
 .../src/routes/v1/admin/communities/index.ts  | 33 +++++----
 .../src/routes/v1/admin/communities/schema.ts | 24 ++++++-
 desci-server/src/services/Communities.ts      |  7 ++
 desci-server/src/services/data/processing.ts  |  2 +-
 5 files changed, 114 insertions(+), 21 deletions(-)

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
index ae46c523a..72adb24f8 100644
--- a/desci-server/src/controllers/admin/communities/index.ts
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -5,11 +5,13 @@ import {
   asyncMap,
   BadRequestError,
   communityService,
+  DuplicateDataError,
+  NotFoundError,
   logger as parentLogger,
   SuccessMessageResponse,
   SuccessResponse,
 } from '../../../internal.js';
-import { addCommunitySchema } from '../../../routes/v1/admin/communities/schema.js';
+import { addCommunitySchema, updateCommunitySchema } from '../../../routes/v1/admin/communities/schema.js';
 import { processUploadToIpfs } from '../../../services/data/processing.js';
 
 const logger = parentLogger.child({ module: 'Admin/Communities/controller' });
@@ -21,15 +23,67 @@ export const todoApi = async (_req: Request, res: Response, next: NextFunction)
 export const createCommunity = async (req: Request, res: Response, _next: NextFunction) => {
   const body = req.body as Required<z.infer<typeof addCommunitySchema>['body']>;
 
+  const exists = await communityService.findCommunityByNameOrSlug(body.slug);
+  if (exists) throw new DuplicateDataError();
+
+  let assets: { key: string; url: string }[];
+  let uploads = Array.isArray(req.files)
+    ? req.files
+    : Object.values(req.files)
+        .map((files) => files[0])
+        .filter(Boolean);
+
+  if (uploads) {
+    uploads = uploads.map((file) => {
+      file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
+      return file;
+    });
+    logger.info({ uploads }, 'Uploads');
+    const { ok, value } = await processUploadToIpfs({ files: uploads });
+    if (ok && value) {
+      assets = value.map((ipfsImg) => ({
+        key: ipfsImg.path,
+        url: `${process.env.IPFS_RESOLVER_OVERRIDE}/${ipfsImg.cid}`,
+      }));
+    } else {
+      throw new BadRequestError('Could not upload file to ipfs');
+    }
+  }
+
+  const image_url = assets.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body.imageUrl;
+  delete body.imageUrl;
+
+  if (!image_url) throw new BadRequestError('No community logo uploaded');
+
+  const hidden = body.hidden.toString() === 'true' ? true : false;
+  const community = await communityService.createCommunity({ ...body, hidden, image_url });
+  new SuccessResponse(community).send(res);
+};
+
+export const updateCommunity = async (req: Request, res: Response, _next: NextFunction) => {
+  const body = req.body as Required<z.infer<typeof updateCommunitySchema>['body']>;
+  const { communityId } = req.params as z.infer<typeof updateCommunitySchema>['params'];
+  logger.info({ body, communityId }, 'updateCommunity');
+
+  let community = await communityService.findCommunityById(parseInt(communityId));
+
+  if (!community) throw new NotFoundError();
+
   let assets: { key: string; url: string }[];
-  if (req.files) {
-    let uploads = Array.isArray(req.files) ? req.files : Object.values(req.files).map((files) => files[0]);
+  let uploads = Array.isArray(req.files)
+    ? req.files
+    : Object.values(req.files)
+        ?.map((files) => files[0])
+        .filter(Boolean);
+
+  logger.info({ uploads: !!uploads }, 'Uploads');
+  if (uploads?.length) {
     uploads = uploads.map((file) => {
       file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
       return file;
     });
     const { ok, value } = await processUploadToIpfs({ files: uploads });
-    if (ok) {
+    if (ok && value) {
       assets = value.map((ipfsImg) => ({
         key: ipfsImg.path,
         url: `${process.env.IPFS_RESOLVER_OVERRIDE}/${ipfsImg.cid}`,
@@ -39,12 +93,15 @@ export const createCommunity = async (req: Request, res: Response, _next: NextFu
     }
   }
 
-  const image_url = body.imageUrl || assets.find((img) => img.key.toLowerCase().includes('imageurl'))?.url;
+  // enforce strict non-empty check on image_url field
+  const image_url =
+    assets?.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body?.imageUrl || community.image_url;
   delete body.imageUrl;
 
   if (!image_url) throw new BadRequestError('No community logo uploaded');
+  const hidden = body.hidden.toString() === 'true' ? true : false;
 
-  const community = await communityService.createCommunity({ ...body, image_url });
+  community = await communityService.updateCommunityById(parseInt(communityId), { ...body, hidden, image_url });
   new SuccessResponse(community).send(res);
 };
 
diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index 9d179c1e6..b43af850b 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -3,7 +3,12 @@ import { Request } from 'express';
 import multer from 'multer';
 import multerS3 from 'multer-s3';
 
-import { createCommunity, listAllCommunities, todoApi } from '../../../../controllers/admin/communities/index.js';
+import {
+  createCommunity,
+  listAllCommunities,
+  todoApi,
+  updateCommunity,
+} from '../../../../controllers/admin/communities/index.js';
 import { asyncHandler, ensureAdmin, ensureUser, logger as parentLogger, validate } from '../../../../internal.js';
 import { isS3Configured, s3Client } from '../../../../services/s3.js';
 
@@ -14,6 +19,7 @@ import {
   addMemberSchema,
   removeEntryAttestationSchema,
   removeMemberSchema,
+  updateCommunitySchema,
 } from './schema.js';
 
 const logger = parentLogger.child({ module: 'Admin/communities' });
@@ -39,7 +45,10 @@ const upload = isS3Configured
     })
   : multer({ preservePath: true });
 
-const uploadHandler = upload.fields([{ name: 'imageUrl', maxCount: 1 }, { name: 'verifiedImageUrl' }]);
+const uploadHandler = upload.fields([
+  { name: 'imageUrl', maxCount: 1 },
+  { name: 'verifiedImageUrl', maxCount: 1 },
+]);
 
 const wrappedHandler = (req: Request, res: Response, next: NextFunction) => {
   uploadHandler(req, res, (err) => {
@@ -65,23 +74,21 @@ const sanitizeBody = async (req: Request, _res: Response, next: NextFunction) =>
 
 router.get('/', [ensureUser, ensureAdmin], asyncHandler(listAllCommunities));
 
-// todo: api to create desci community
 router.post(
   '/',
-  [ensureUser, ensureAdmin, /* upload.single('image'),*/ wrappedHandler, sanitizeBody, validate(addCommunitySchema)],
+  [ensureUser, ensureAdmin, wrappedHandler, sanitizeBody, validate(addCommunitySchema)],
   asyncHandler(createCommunity),
 );
 
-// todo: api to update desci community
-router.post(
-  ':communityId/',
-  [ensureUser, ensureAdmin, validate(addCommunitySchema), wrappedHandler],
-  asyncHandler(todoApi),
+router.put(
+  '/:communityId',
+  [ensureUser, ensureAdmin, wrappedHandler, sanitizeBody, validate(updateCommunitySchema)],
+  asyncHandler(updateCommunity),
 );
 
 // todo: api to create attestation for desci community ( with option to add it as an entryAttestation)
 router.post(
-  ':communityId/attestations',
+  '/:communityId/attestations',
   [ensureUser, ensureAdmin, validate(addAttestationSchema), wrappedHandler],
   asyncHandler(todoApi),
 );
@@ -91,21 +98,21 @@ router.post(':communityId/members', [ensureUser, ensureAdmin, validate(addMember
 
 // todo: api to remove a desci community member
 router.delete(
-  ':communityId/members/:memberId',
+  '/:communityId/members/:memberId',
   [ensureUser, ensureAdmin, validate(removeMemberSchema)],
   asyncHandler(todoApi),
 );
 
 // todo: api to link attestation to community (this adds it to the communityEntryAttestation)
 router.post(
-  ':communityId/addEntryAttestation',
+  '/:communityId/addEntryAttestation',
   [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],
   asyncHandler(todoApi),
 );
 
 // todo: api to remove attestation as required in for community (remove communityEntryAttestation)
 router.post(
-  ':communityId/removeEntryAttestation',
+  '/:communityId/removeEntryAttestation',
   [ensureUser, ensureAdmin, validate(removeEntryAttestationSchema)],
   asyncHandler(todoApi),
 );
diff --git a/desci-server/src/routes/v1/admin/communities/schema.ts b/desci-server/src/routes/v1/admin/communities/schema.ts
index 8d9480eef..b2dc34bf0 100644
--- a/desci-server/src/routes/v1/admin/communities/schema.ts
+++ b/desci-server/src/routes/v1/admin/communities/schema.ts
@@ -6,7 +6,10 @@ export const addCommunitySchema = z.object({
     name: z.string(),
     subtitle: z.string().min(1, 'Subtitle cannot be empty'),
     description: z.string().min(1, 'Description cannot be empty'),
-    hidden: z.boolean().default(false),
+    hidden: z.coerce
+      .boolean()
+      .transform((value) => (value.toString() === 'true' ? true : false))
+      .default(false),
     keywords: z.array(z.string()).min(1, 'Community must have at least one keyword'),
     imageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
     slug: z.string().min(3),
@@ -14,6 +17,25 @@ export const addCommunitySchema = z.object({
   }),
 });
 
+export const updateCommunitySchema = z.object({
+  body: z.object({
+    name: z.string().optional(),
+    subtitle: z.string().min(1, 'Subtitle cannot be empty').optional(),
+    description: z.string().min(1, 'Description cannot be empty').optional(),
+    hidden: z.coerce
+      .boolean()
+      .transform((value) => (value.toString() === 'true' ? true : false))
+      .default(false),
+    keywords: z.array(z.string()).min(1, 'Community must have at least one keyword').optional(),
+    imageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
+    slug: z.string().min(3).optional(),
+    links: z.array(z.string().url()).optional(),
+  }),
+  params: z.object({
+    communityId: z.string(),
+  }),
+});
+
 export const addAttestationSchema = z.object({
   params: z.object({
     communityId: z.coerce.number(),
diff --git a/desci-server/src/services/Communities.ts b/desci-server/src/services/Communities.ts
index f9fc29ea1..bac794c04 100644
--- a/desci-server/src/services/Communities.ts
+++ b/desci-server/src/services/Communities.ts
@@ -88,6 +88,13 @@ export class CommunityService {
     });
   }
 
+  async updateCommunityById(id: number, community: Prisma.DesciCommunityUpdateInput) {
+    return prisma.desciCommunity.update({
+      where: { id },
+      data: community,
+    });
+  }
+
   /**
    * This query retrieves data from the "NodeAttestation" table along with the counts of related records from the
    * "Annotation", "NodeAttestationReaction", and "NodeAttestationVerification" tables.
diff --git a/desci-server/src/services/data/processing.ts b/desci-server/src/services/data/processing.ts
index 2b9454a69..b17c5f9bb 100644
--- a/desci-server/src/services/data/processing.ts
+++ b/desci-server/src/services/data/processing.ts
@@ -434,7 +434,7 @@ export async function pinNewFiles(files: any[], wrapWithDirectory = false): Prom
   if (structuredFilesForPinning.length) {
     if (structuredFilesForPinning.length) uploaded = await pinDirectory(structuredFilesForPinning, wrapWithDirectory);
     if (!uploaded.length) throw createIpfsUploadFailureError();
-    logger.info('[UPDATE DATASET] Pinned files: ', uploaded.length);
+    logger.info({ uploaded }, '[UPDATE DATASET] Pinned files: ');
   }
   return uploaded;
 }

From fe3a28eb0f8c3927f8dbbd6f4db9c9e19777cbc5 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 23 Sep 2024 08:55:42 -0500
Subject: [PATCH 33/81] add and update attestation api

---
 .../controllers/admin/communities/index.ts    | 127 +++++++++++++++++-
 .../src/routes/v1/admin/communities/index.ts  |  16 ++-
 .../src/routes/v1/admin/communities/schema.ts |  12 +-
 desci-server/src/services/Attestation.ts      |   5 +-
 4 files changed, 145 insertions(+), 15 deletions(-)

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
index 72adb24f8..db0b2ca94 100644
--- a/desci-server/src/controllers/admin/communities/index.ts
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -3,6 +3,7 @@ import { z } from 'zod';
 
 import {
   asyncMap,
+  attestationService,
   BadRequestError,
   communityService,
   DuplicateDataError,
@@ -11,7 +12,12 @@ import {
   SuccessMessageResponse,
   SuccessResponse,
 } from '../../../internal.js';
-import { addCommunitySchema, updateCommunitySchema } from '../../../routes/v1/admin/communities/schema.js';
+import {
+  addAttestationSchema,
+  addCommunitySchema,
+  updateAttestationSchema,
+  updateCommunitySchema,
+} from '../../../routes/v1/admin/communities/schema.js';
 import { processUploadToIpfs } from '../../../services/data/processing.js';
 
 const logger = parentLogger.child({ module: 'Admin/Communities/controller' });
@@ -33,7 +39,7 @@ export const createCommunity = async (req: Request, res: Response, _next: NextFu
         .map((files) => files[0])
         .filter(Boolean);
 
-  if (uploads) {
+  if (uploads?.length > 0) {
     uploads = uploads.map((file) => {
       file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
       return file;
@@ -50,7 +56,7 @@ export const createCommunity = async (req: Request, res: Response, _next: NextFu
     }
   }
 
-  const image_url = assets.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body.imageUrl;
+  const image_url = assets?.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body.imageUrl;
   delete body.imageUrl;
 
   if (!image_url) throw new BadRequestError('No community logo uploaded');
@@ -65,7 +71,7 @@ export const updateCommunity = async (req: Request, res: Response, _next: NextFu
   const { communityId } = req.params as z.infer<typeof updateCommunitySchema>['params'];
   logger.info({ body, communityId }, 'updateCommunity');
 
-  let community = await communityService.findCommunityById(parseInt(communityId));
+  let community = await communityService.findCommunityById(+communityId);
 
   if (!community) throw new NotFoundError();
 
@@ -77,7 +83,7 @@ export const updateCommunity = async (req: Request, res: Response, _next: NextFu
         .filter(Boolean);
 
   logger.info({ uploads: !!uploads }, 'Uploads');
-  if (uploads?.length) {
+  if (uploads?.length > 0) {
     uploads = uploads.map((file) => {
       file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
       return file;
@@ -101,11 +107,11 @@ export const updateCommunity = async (req: Request, res: Response, _next: NextFu
   if (!image_url) throw new BadRequestError('No community logo uploaded');
   const hidden = body.hidden.toString() === 'true' ? true : false;
 
-  community = await communityService.updateCommunityById(parseInt(communityId), { ...body, hidden, image_url });
+  community = await communityService.updateCommunityById(+communityId, { ...body, hidden, image_url });
   new SuccessResponse(community).send(res);
 };
 
-export const listAllCommunities = async (_req: Request, res: Response, next: NextFunction) => {
+export const listAllCommunities = async (_req: Request, res: Response, _next: NextFunction) => {
   const communities = await communityService.adminGetCommunities();
   logger.info({ communities }, 'List communities');
   const data = await asyncMap(communities, async (community) => {
@@ -119,3 +125,110 @@ export const listAllCommunities = async (_req: Request, res: Response, next: Nex
   });
   new SuccessResponse(data).send(res);
 };
+
+export const createAttestation = async (req: Request, res: Response, _next: NextFunction) => {
+  const body = req.body as Required<z.infer<typeof addAttestationSchema>['body']>;
+  const { communityId } = req.params as z.infer<typeof addAttestationSchema>['params'];
+  logger.info({ communityId, body }, 'Payload');
+
+  const community = await communityService.findCommunityById(Number(communityId));
+  if (!community) throw new NotFoundError(`Community ${communityId} not found`);
+
+  let assets: { key: string; url: string }[];
+  let uploads = Array.isArray(req.files)
+    ? req.files
+    : Object.values(req.files)
+        .map((files) => files[0])
+        .filter(Boolean);
+
+  if (uploads) {
+    uploads = uploads.map((file) => {
+      file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
+      return file;
+    });
+
+    const { ok, value } = await processUploadToIpfs({ files: uploads });
+    if (ok && value) {
+      assets = value.map((ipfsImg) => ({
+        key: ipfsImg.path,
+        url: `${process.env.IPFS_RESOLVER_OVERRIDE}/${ipfsImg.cid}`,
+      }));
+    } else {
+      throw new BadRequestError('Could not upload file to ipfs');
+    }
+  }
+
+  const image_url = assets.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body.imageUrl;
+  delete body.imageUrl;
+  const verified_image_url =
+    assets.find((img) => img.key.toLowerCase().includes('verifiedimageurl'))?.url || body.verifiedImageUrl;
+  delete body.verifiedImageUrl;
+
+  logger.info({ image_url, verified_image_url }, 'Assets');
+
+  if (!image_url) throw new BadRequestError('No community logo uploaded');
+
+  const isProtected = body.protected.toString() === 'true' ? true : false;
+  const attestation = await attestationService.create({
+    ...body,
+    image_url,
+    verified_image_url,
+    communityId: community.id,
+    protected: isProtected,
+  });
+  new SuccessResponse(attestation).send(res);
+};
+
+export const updateAttestation = async (req: Request, res: Response, _next: NextFunction) => {
+  const body = req.body as Required<z.infer<typeof addAttestationSchema>['body']>;
+  const { attestationId } = req.params as z.infer<typeof updateAttestationSchema>['params'];
+  logger.info({ attestationId, body }, 'Payload');
+
+  const exists = await attestationService.findAttestationById(Number(attestationId));
+  if (!exists) throw new NotFoundError(`Attestation ${attestationId} not found`);
+
+  let assets: { key: string; url: string }[] | undefined;
+  let uploads = Array.isArray(req.files)
+    ? req.files
+    : Object.values(req.files)
+        .map((files) => files[0])
+        .filter(Boolean);
+
+  logger.info({ uploads: uploads?.map((up) => up.fieldname) }, 'Uploads');
+  if (uploads?.length > 0) {
+    uploads = uploads.map((file) => {
+      file.originalname = `${file.fieldname}.${file.originalname.split('.')?.[1]}`;
+      return file;
+    });
+    const { ok, value } = await processUploadToIpfs({ files: uploads });
+    logger.info({ ok, value }, 'Uploads REsult');
+    if (ok && value) {
+      assets = value.map((ipfsImg) => ({
+        key: ipfsImg.path,
+        url: `${process.env.IPFS_RESOLVER_OVERRIDE}/${ipfsImg.cid}`,
+      }));
+    } else {
+      throw new BadRequestError('Could not upload file to ipfs');
+    }
+  }
+
+  const image_url = assets?.find((img) => img.key.toLowerCase().includes('imageurl'))?.url || body.imageUrl;
+  const verified_image_url =
+    assets?.find((img) => img.key.toLowerCase().includes('verifiedimageurl'))?.url || body.verifiedImageUrl;
+  delete body.imageUrl;
+  delete body.verifiedImageUrl;
+
+  logger.info({ image_url, verified_image_url }, 'Assets');
+
+  if (!image_url) throw new BadRequestError('No attestation image uploaded');
+
+  const isProtected = body.protected.toString() === 'true' ? true : false;
+  const attestation = await attestationService.updateAttestation(exists.id, {
+    ...body,
+    image_url,
+    verified_image_url,
+    communityId: exists.communityId,
+    protected: isProtected,
+  });
+  new SuccessResponse(attestation).send(res);
+};
diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index b43af850b..0a32bbf35 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -4,9 +4,11 @@ import multer from 'multer';
 import multerS3 from 'multer-s3';
 
 import {
+  createAttestation,
   createCommunity,
   listAllCommunities,
   todoApi,
+  updateAttestation,
   updateCommunity,
 } from '../../../../controllers/admin/communities/index.js';
 import { asyncHandler, ensureAdmin, ensureUser, logger as parentLogger, validate } from '../../../../internal.js';
@@ -19,6 +21,7 @@ import {
   addMemberSchema,
   removeEntryAttestationSchema,
   removeMemberSchema,
+  updateAttestationSchema,
   updateCommunitySchema,
 } from './schema.js';
 
@@ -86,15 +89,20 @@ router.put(
   asyncHandler(updateCommunity),
 );
 
-// todo: api to create attestation for desci community ( with option to add it as an entryAttestation)
 router.post(
   '/:communityId/attestations',
-  [ensureUser, ensureAdmin, validate(addAttestationSchema), wrappedHandler],
-  asyncHandler(todoApi),
+  [ensureUser, ensureAdmin, wrappedHandler, validate(addAttestationSchema)],
+  asyncHandler(createAttestation),
+);
+
+router.put(
+  '/:communityId/attestations/:attestationId',
+  [ensureUser, ensureAdmin, wrappedHandler, validate(updateAttestationSchema)],
+  asyncHandler(updateAttestation),
 );
 
 // todo: api to add a desci community member
-router.post(':communityId/members', [ensureUser, ensureAdmin, validate(addMemberSchema)], asyncHandler(todoApi));
+router.post('/:communityId/members', [ensureUser, ensureAdmin, validate(addMemberSchema)], asyncHandler(todoApi));
 
 // todo: api to remove a desci community member
 router.delete(
diff --git a/desci-server/src/routes/v1/admin/communities/schema.ts b/desci-server/src/routes/v1/admin/communities/schema.ts
index b2dc34bf0..5ffcaff83 100644
--- a/desci-server/src/routes/v1/admin/communities/schema.ts
+++ b/desci-server/src/routes/v1/admin/communities/schema.ts
@@ -32,7 +32,7 @@ export const updateCommunitySchema = z.object({
     links: z.array(z.string().url()).optional(),
   }),
   params: z.object({
-    communityId: z.string(),
+    communityId: z.coerce.number(),
   }),
 });
 
@@ -42,14 +42,20 @@ export const addAttestationSchema = z.object({
   }),
   body: z.object({
     name: z.string(),
-    communitySlug: z.string(),
     description: z.string(),
     imageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
     verifiedImageUrl: z.string().url().optional(), //"https://pub.desci.com/ipfs/bafkreie7kxhzpzhsbywcrpgyv5yvy3qxcjsibuxsnsh5olaztl2uvnrzx4",
-    protected: z.boolean().default(false),
+    protected: z.coerce
+      .boolean()
+      .transform((value) => (value.toString() === 'true' ? true : false))
+      .default(false),
   }),
 });
 
+export const updateAttestationSchema = addAttestationSchema.extend({
+  params: z.object({ attestationId: z.coerce.number(), communityId: z.coerce.number() }),
+});
+
 export const addMemberSchema = z.object({
   params: z.object({
     communityId: z.coerce.number(),
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index 475f58be1..48a690d8a 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -171,7 +171,10 @@ export class AttestationService {
     const attestation = await this.findAttestationById(attestationId);
 
     if (!attestation) throw new AttestationNotFoundError();
-
+    await prisma.attestation.update({
+      where: { id: attestationId },
+      data: { verified_image_url: data.verified_image_url },
+    });
     await this.#publishVersion({
       name: data.name as string,
       description: data.description,

From eb1fc1b9114db6f4684033b956ddf5f95c196ce7 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 23 Sep 2024 11:33:24 -0500
Subject: [PATCH 34/81] add and remove community member apis

---
 .../controllers/admin/communities/index.ts    | 40 +++++++++++++++++++
 .../src/routes/v1/admin/communities/index.ts  |  8 ++--
 .../src/routes/v1/admin/communities/schema.ts |  6 +--
 desci-server/src/services/Communities.ts      |  8 ++++
 4 files changed, 54 insertions(+), 8 deletions(-)

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
index db0b2ca94..e6ffc0221 100644
--- a/desci-server/src/controllers/admin/communities/index.ts
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -1,3 +1,4 @@
+import { CommunityMembershipRole } from '@prisma/client';
 import { NextFunction, Request, Response } from 'express';
 import { z } from 'zod';
 
@@ -9,12 +10,15 @@ import {
   DuplicateDataError,
   NotFoundError,
   logger as parentLogger,
+  prisma,
   SuccessMessageResponse,
   SuccessResponse,
 } from '../../../internal.js';
 import {
   addAttestationSchema,
   addCommunitySchema,
+  addMemberSchema,
+  removeMemberSchema,
   updateAttestationSchema,
   updateCommunitySchema,
 } from '../../../routes/v1/admin/communities/schema.js';
@@ -232,3 +236,39 @@ export const updateAttestation = async (req: Request, res: Response, _next: Next
   });
   new SuccessResponse(attestation).send(res);
 };
+
+export const addMember = async (req: Request, res: Response, _next: NextFunction) => {
+  const { userId, role }: Required<z.infer<typeof addMemberSchema>['body']> = req.body;
+  const { communityId }: z.infer<typeof addMemberSchema>['params'] = req.params;
+
+  const user = await prisma.user.findFirst({ where: { id: userId } });
+  if (!user) throw new NotFoundError('Invalid user');
+
+  const community = await communityService.findCommunityById(Number(communityId));
+  if (!community) throw new NotFoundError(`No Desci community with ID: ${Number(communityId)} found!`);
+
+  const exists = await communityService.findMemberByUserId(Number(communityId), userId);
+  if (exists) throw new DuplicateDataError();
+
+  const member = await communityService.addCommunityMember(parseInt(communityId), {
+    userId,
+    communityId: parseInt(communityId),
+    role,
+  });
+
+  new SuccessResponse(member).send(res);
+};
+
+export const removeMember = async (req: Request, res: Response, _next: NextFunction) => {
+  const { communityId, memberId }: z.infer<typeof removeMemberSchema>['params'] = req.params;
+
+  const community = await communityService.findCommunityById(Number(communityId));
+  if (!community) throw new NotFoundError(`No Desci community with ID: ${Number(communityId)} found!`);
+
+  const exists = await communityService.findMemberById(Number(memberId));
+  if (!exists) throw new NotFoundError();
+
+  await communityService.removeMemberById(Number(memberId));
+
+  new SuccessMessageResponse().send(res);
+};
diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index 0a32bbf35..5c807d836 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -4,9 +4,11 @@ import multer from 'multer';
 import multerS3 from 'multer-s3';
 
 import {
+  addMember,
   createAttestation,
   createCommunity,
   listAllCommunities,
+  removeMember,
   todoApi,
   updateAttestation,
   updateCommunity,
@@ -101,14 +103,12 @@ router.put(
   asyncHandler(updateAttestation),
 );
 
-// todo: api to add a desci community member
-router.post('/:communityId/members', [ensureUser, ensureAdmin, validate(addMemberSchema)], asyncHandler(todoApi));
+router.post('/:communityId/members', [ensureUser, ensureAdmin, validate(addMemberSchema)], asyncHandler(addMember));
 
-// todo: api to remove a desci community member
 router.delete(
   '/:communityId/members/:memberId',
   [ensureUser, ensureAdmin, validate(removeMemberSchema)],
-  asyncHandler(todoApi),
+  asyncHandler(removeMember),
 );
 
 // todo: api to link attestation to community (this adds it to the communityEntryAttestation)
diff --git a/desci-server/src/routes/v1/admin/communities/schema.ts b/desci-server/src/routes/v1/admin/communities/schema.ts
index 5ffcaff83..9600b2a73 100644
--- a/desci-server/src/routes/v1/admin/communities/schema.ts
+++ b/desci-server/src/routes/v1/admin/communities/schema.ts
@@ -58,10 +58,10 @@ export const updateAttestationSchema = addAttestationSchema.extend({
 
 export const addMemberSchema = z.object({
   params: z.object({
-    communityId: z.coerce.number(),
+    communityId: z.string(),
   }),
   body: z.object({
-    userId: z.coerce.number(),
+    userId: z.number(),
     role: z.enum([CommunityMembershipRole.ADMIN, CommunityMembershipRole.MEMBER]),
   }),
 });
@@ -69,8 +69,6 @@ export const addMemberSchema = z.object({
 export const removeMemberSchema = z.object({
   params: z.object({
     communityId: z.coerce.number(),
-  }),
-  body: z.object({
     memberId: z.coerce.number(),
   }),
 });
diff --git a/desci-server/src/services/Communities.ts b/desci-server/src/services/Communities.ts
index bac794c04..6e9a467aa 100644
--- a/desci-server/src/services/Communities.ts
+++ b/desci-server/src/services/Communities.ts
@@ -318,9 +318,17 @@ export class CommunityService {
     return await prisma.communityMember.findUnique({ where: { userId_communityId: { userId, communityId } } });
   }
 
+  async findMemberById(id: number) {
+    return await prisma.communityMember.findUnique({ where: { id } });
+  }
+
   async removeMember(communityId: number, userId: number) {
     return prisma.communityMember.delete({ where: { userId_communityId: { userId, communityId } } });
   }
+
+  async removeMemberById(id: number) {
+    return prisma.communityMember.delete({ where: { id } });
+  }
 }
 
 export const communityService = new CommunityService();

From c40c9739f8a0744b3c120b4150aa6d70af7098af Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 24 Sep 2024 04:49:37 -0500
Subject: [PATCH 35/81] implement apis for adding/removing community required
 attestations

---
 .../controllers/admin/communities/index.ts    | 37 +++++++++++++++++++
 .../src/routes/v1/admin/communities/index.ts  | 16 ++++----
 .../src/routes/v1/admin/communities/schema.ts | 11 ------
 desci-server/src/services/Attestation.ts      | 24 ++++++++++++
 4 files changed, 69 insertions(+), 19 deletions(-)

diff --git a/desci-server/src/controllers/admin/communities/index.ts b/desci-server/src/controllers/admin/communities/index.ts
index e6ffc0221..2daba8585 100644
--- a/desci-server/src/controllers/admin/communities/index.ts
+++ b/desci-server/src/controllers/admin/communities/index.ts
@@ -17,6 +17,7 @@ import {
 import {
   addAttestationSchema,
   addCommunitySchema,
+  addEntryAttestationSchema,
   addMemberSchema,
   removeMemberSchema,
   updateAttestationSchema,
@@ -272,3 +273,39 @@ export const removeMember = async (req: Request, res: Response, _next: NextFunct
 
   new SuccessMessageResponse().send(res);
 };
+
+export const addEntryAttestation = async (req: Request, res: Response, _next: NextFunction) => {
+  const { communityId, attestationId }: z.infer<typeof addEntryAttestationSchema>['params'] = req.params;
+
+  const community = await communityService.findCommunityById(Number(communityId));
+  if (!community) throw new NotFoundError(`No Desci community with ID: ${Number(communityId)} not found!`);
+
+  const attestation = await attestationService.findAttestationById(+attestationId);
+  if (!attestation) throw new NotFoundError(`No attestation with ID: ${Number(attestationId)} not found!`);
+
+  const exists = await attestationService.getCommunityEntryAttestation(Number(communityId), Number(attestationId));
+  if (exists) throw new DuplicateDataError();
+
+  const data = await attestationService.addCommunityEntryAttestation({
+    communityId: Number(communityId),
+    attestationId: Number(attestationId),
+    attestationVersion: attestation.AttestationVersion[attestation.AttestationVersion.length - 1].id,
+  });
+
+  new SuccessResponse(data).send(res);
+};
+
+export const removeEntryAttestation = async (req: Request, res: Response, _next: NextFunction) => {
+  const { communityId, attestationId }: z.infer<typeof addEntryAttestationSchema>['params'] = req.params;
+
+  const attestation = await attestationService.findAttestationById(+attestationId);
+  if (!attestation) throw new NotFoundError(`No attestation with ID: ${Number(attestationId)} not found!`);
+
+  const data = await attestationService.removeCommunityEntryAttestation({
+    communityId: Number(communityId),
+    attestationId: Number(attestationId),
+    attestationVersion: attestation.AttestationVersion[attestation.AttestationVersion.length - 1].id,
+  });
+
+  new SuccessResponse(data).send(res);
+};
diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index 5c807d836..f09a1b45f 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -4,12 +4,13 @@ import multer from 'multer';
 import multerS3 from 'multer-s3';
 
 import {
+  addEntryAttestation,
   addMember,
   createAttestation,
   createCommunity,
   listAllCommunities,
+  removeEntryAttestation,
   removeMember,
-  todoApi,
   updateAttestation,
   updateCommunity,
 } from '../../../../controllers/admin/communities/index.js';
@@ -21,7 +22,6 @@ import {
   addCommunitySchema,
   addEntryAttestationSchema,
   addMemberSchema,
-  removeEntryAttestationSchema,
   removeMemberSchema,
   updateAttestationSchema,
   updateCommunitySchema,
@@ -113,16 +113,16 @@ router.delete(
 
 // todo: api to link attestation to community (this adds it to the communityEntryAttestation)
 router.post(
-  '/:communityId/addEntryAttestation',
+  '/:communityId/addEntryAttestation/:attestationId',
   [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],
-  asyncHandler(todoApi),
+  asyncHandler(addEntryAttestation),
 );
 
 // todo: api to remove attestation as required in for community (remove communityEntryAttestation)
-router.post(
-  '/:communityId/removeEntryAttestation',
-  [ensureUser, ensureAdmin, validate(removeEntryAttestationSchema)],
-  asyncHandler(todoApi),
+router.delete(
+  '/:communityId/removeEntryAttestation/:attestationId',
+  [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],
+  asyncHandler(removeEntryAttestation),
 );
 
 export default router;
diff --git a/desci-server/src/routes/v1/admin/communities/schema.ts b/desci-server/src/routes/v1/admin/communities/schema.ts
index 9600b2a73..1c3467e13 100644
--- a/desci-server/src/routes/v1/admin/communities/schema.ts
+++ b/desci-server/src/routes/v1/admin/communities/schema.ts
@@ -76,17 +76,6 @@ export const removeMemberSchema = z.object({
 export const addEntryAttestationSchema = z.object({
   params: z.object({
     communityId: z.coerce.number(),
-  }),
-  body: z.object({
-    attestationId: z.coerce.number(),
-  }),
-});
-
-export const removeEntryAttestationSchema = z.object({
-  params: z.object({
-    communityId: z.coerce.number(),
-  }),
-  body: z.object({
     attestationId: z.coerce.number(),
   }),
 });
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index 48a690d8a..8a7fbbb1a 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -17,6 +17,7 @@ import {
   DuplicateReactionError,
   DuplicateVerificationError,
   NoAccessError,
+  NotFoundError,
   VerificationError,
   VerificationNotFoundError,
   ensureUuidEndsWithDot,
@@ -239,6 +240,23 @@ export class AttestationService {
     });
   }
 
+  async removeCommunityEntryAttestation({
+    communityId,
+    attestationId,
+    attestationVersion: version,
+  }: {
+    communityId: number;
+    attestationId: number;
+    attestationVersion: number;
+  }) {
+    const existingSelection = await prisma.communityEntryAttestation.findFirst({
+      where: { desciCommunityId: communityId, attestationId, attestationVersionId: version },
+    });
+    if (!existingSelection) return null;
+
+    return await prisma.communityEntryAttestation.delete({ where: { id: existingSelection.id } });
+  }
+
   async getAllNodeAttestations(uuid: string) {
     return prisma.nodeAttestation.findMany({
       where: { nodeUuid: ensureUuidEndsWithDot(uuid), revoked: false },
@@ -300,6 +318,12 @@ export class AttestationService {
     });
   }
 
+  async getCommunityEntryAttestation(communityId: number, attestationId: number) {
+    return prisma.communityEntryAttestation.findFirst({
+      where: { desciCommunityId: communityId, attestationId, required: true },
+    });
+  }
+
   async getCommunityEntryAttestations(communityId: number) {
     const community = await communityService.findCommunityById(communityId);
     if (!community) throw new CommunityNotFoundError();

From 42c5f7c55595f2d885477370b185e4cb7090243a Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 24 Sep 2024 11:49:41 +0200
Subject: [PATCH 36/81] sanitize output for email

---
 desci-server/src/services/auth.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/desci-server/src/services/auth.ts b/desci-server/src/services/auth.ts
index 3145f4e20..193df0ea7 100644
--- a/desci-server/src/services/auth.ts
+++ b/desci-server/src/services/auth.ts
@@ -124,7 +124,7 @@ const sendMagicLinkEmail = async (email: string, ip?: string) => {
   });
 
   if (env.SHOULD_SEND_EMAIL) {
-    logger.info({ fn: 'sendMagicLinkEmail', email, token }, `Sending actual email to ${email} token: ${token}`);
+    logger.info({ fn: 'sendMagicLinkEmail', email }, `Sending actual email`);
 
     const url = `${env.DAPP_URL}/web/login?e=${email}&c=${token}`;
     const goodIp = ip?.length > 0 && ip !== '::1' && ip !== '127.0.0.1' && ip !== 'localhost';

From 8a3ffc64c421eca41b6737d38f3beb56b5620516 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 24 Sep 2024 05:00:09 -0500
Subject: [PATCH 37/81] clean up

---
 desci-server/src/routes/v1/admin/communities/index.ts | 2 --
 1 file changed, 2 deletions(-)

diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index f09a1b45f..d6acaa0bb 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -111,14 +111,12 @@ router.delete(
   asyncHandler(removeMember),
 );
 
-// todo: api to link attestation to community (this adds it to the communityEntryAttestation)
 router.post(
   '/:communityId/addEntryAttestation/:attestationId',
   [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],
   asyncHandler(addEntryAttestation),
 );
 
-// todo: api to remove attestation as required in for community (remove communityEntryAttestation)
 router.delete(
   '/:communityId/removeEntryAttestation/:attestationId',
   [ensureUser, ensureAdmin, validate(addEntryAttestationSchema)],

From 164b56e13da4846709a0fe4df4419e7488d8682b Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 24 Sep 2024 12:19:50 +0200
Subject: [PATCH 38/81] ceramic: bump nodes to 6.5.0

---
 ceramic-k8s/ceramic_deployment_dev.yaml  | 2 +-
 ceramic-k8s/ceramic_deployment_prod.yaml | 2 +-
 docker-compose.dev.yml                   | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/ceramic-k8s/ceramic_deployment_dev.yaml b/ceramic-k8s/ceramic_deployment_dev.yaml
index 58946e7ec..68f3fd464 100644
--- a/ceramic-k8s/ceramic_deployment_dev.yaml
+++ b/ceramic-k8s/ceramic_deployment_dev.yaml
@@ -41,7 +41,7 @@ spec:
         App: JsCeramicDev
     spec:
       containers:
-        - image: ceramicnetwork/js-ceramic:6.4.0
+        - image: ceramicnetwork/js-ceramic:6.5.0
           name: js-ceramic-dev
           command: ["/bin/bash", "-c"]
           args:
diff --git a/ceramic-k8s/ceramic_deployment_prod.yaml b/ceramic-k8s/ceramic_deployment_prod.yaml
index ce84fecec..7ed15bb76 100644
--- a/ceramic-k8s/ceramic_deployment_prod.yaml
+++ b/ceramic-k8s/ceramic_deployment_prod.yaml
@@ -62,7 +62,7 @@ spec:
         App: JsCeramicProd
     spec:
       containers:
-        - image: ceramicnetwork/js-ceramic:6.4.0
+        - image: ceramicnetwork/js-ceramic:6.5.0
           name: js-ceramic-prod
           command: ["/bin/bash", "-c"]
           volumeMounts:
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 2be51c7fe..faba1ceca 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -184,7 +184,7 @@ services:
       - ./local-data/redis:/data
 
   ceramic:
-    image: ceramicnetwork/js-ceramic:6.4.0
+    image: ceramicnetwork/js-ceramic:6.5.0
     container_name: ceramic
     ports:
       - "7007:7007"

From 82b1782a58bf3724aceb014c4a55862cd959c017 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 24 Sep 2024 16:09:29 +0200
Subject: [PATCH 39/81] server: include stream & dpid with other public info in
 checkNodeAccess

---
 desci-server/src/controllers/nodes/byDpid.ts       |  4 ++++
 .../src/controllers/nodes/checkNodeAccess.ts       | 14 +++++++-------
 2 files changed, 11 insertions(+), 7 deletions(-)

diff --git a/desci-server/src/controllers/nodes/byDpid.ts b/desci-server/src/controllers/nodes/byDpid.ts
index 10b575e24..b3a2077e0 100755
--- a/desci-server/src/controllers/nodes/byDpid.ts
+++ b/desci-server/src/controllers/nodes/byDpid.ts
@@ -14,6 +14,8 @@ type NodeByDpidParams = {
 
 type NodeByDpidSuccess = {
   uuid: string;
+  dpidAlias: number;
+  ceramicStream: string;
 };
 
 type NodeByDpidError = {
@@ -43,6 +45,8 @@ export const nodeByDpid = async (
     node = await prisma.node.findFirstOrThrow({
       select: {
         uuid: true,
+        dpidAlias: true,
+        ceramicStream: true,
       },
       where: {
         dpidAlias: {
diff --git a/desci-server/src/controllers/nodes/checkNodeAccess.ts b/desci-server/src/controllers/nodes/checkNodeAccess.ts
index da59758e1..4f6c8feb6 100644
--- a/desci-server/src/controllers/nodes/checkNodeAccess.ts
+++ b/desci-server/src/controllers/nodes/checkNodeAccess.ts
@@ -13,8 +13,10 @@ type GetCheckNodeAccessResponse = {
   isOwner: boolean;
   isShared: boolean;
   hasAccess: boolean;
-  sharedOn?: number;
   isPublished: boolean;
+  ceramicStream?: string;
+  dpidAlias?: number;
+  sharedOn?: number;
   recentCid?: string;
   manifestUrl?: string;
 };
@@ -42,14 +44,10 @@ export const checkNodeAccess = async (
   const node = await prisma.node.findFirst({
     select: {
       uuid: true,
-      id: true,
-      createdAt: true,
-      updatedAt: true,
       ownerId: true,
-      title: true,
       manifestUrl: true,
-      cid: true,
-      NodeCover: true,
+      dpidAlias: true,
+      ceramicStream: true,
       versions: {
         select: {
           manifestUrl: true,
@@ -92,6 +90,8 @@ export const checkNodeAccess = async (
     isShared: !isOwner && !!privSharedNode,
     hasAccess,
     isPublished,
+    ceramicStream: node.ceramicStream,
+    dpidAlias: node.dpidAlias,
     sharedOn: privSharedNode?.createdAt.getTime(),
     recentCid: latestPublishedVersion?.manifestUrl,
     manifestUrl: hasAccess ? node.versions[0]?.manifestUrl : undefined,

From 04ba63ee3b0cfa38b5c2e6c2cb0ab33a3bf0f00c Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 24 Sep 2024 17:45:26 -0500
Subject: [PATCH 40/81] fix: Orcid Nodes dataset work record dpid path, clear
 orcid work record if no claims are found

---
 desci-server/src/services/orcid.ts | 36 +++++++++++++++++-------------
 desci-server/src/theGraph.ts       | 22 +++++++++++++-----
 2 files changed, 36 insertions(+), 22 deletions(-)

diff --git a/desci-server/src/services/orcid.ts b/desci-server/src/services/orcid.ts
index c3cc0a60a..751be20d6 100644
--- a/desci-server/src/services/orcid.ts
+++ b/desci-server/src/services/orcid.ts
@@ -54,7 +54,6 @@ class OrcidApiService {
       throw new Error('User does not have an orcid auth token');
     }
 
-    // todo: refresh token if necessary
     try {
       const url = `https://${ORCID_DOMAIN}/oauth/token`;
 
@@ -125,6 +124,9 @@ class OrcidApiService {
    * @returns
    */
   async removeClaimRecord({ claimId, nodeUuid, orcid }: { claimId: number; nodeUuid: string; orcid: string }) {
+    const user = await prisma.user.findUnique({ where: { orcid } });
+    const authToken = await this.getAccessToken(user.id);
+
     const putCode = await prisma.orcidPutCodes.findFirst({
       where: {
         claimId,
@@ -133,18 +135,13 @@ class OrcidApiService {
       },
     });
 
-    if (!putCode) return;
-
-    const user = await prisma.user.findUnique({ where: { orcid } });
-    const authToken = await this.getAccessToken(user.id);
-    logger.info({ userId: user.id, authToken: !!authToken, nodeUuid }, '[ORCID::DELETE]:: START');
+    // remove claim record on Orcid profile
+    if (putCode) {
+      logger.info({ userId: user.id, authToken: !!authToken, nodeUuid }, '[ORCID::DELETE]:: START');
 
-    await this.removeWorkRecord({ orcid, putCode, authToken });
+      await this.removeWorkRecord({ orcid, putCode, authToken });
+    }
 
-    const { researchObjects } = await getIndexedResearchObjects([nodeUuid]);
-    const researchObject = researchObjects[0] as IndexedResearchObject;
-    const manifestCid = hexToCid(researchObject.recentCid);
-    const latestManifest = await getManifestByCid(manifestCid);
     let claims = await attestationService.getProtectedNodeClaims(nodeUuid);
     claims = claims.filter((claim) => claim.verifications > 0);
     logger.info({ claims: claims.length }, '[ORCID::DELETE]:: CHECK CLAIMS');
@@ -185,7 +182,7 @@ class OrcidApiService {
         code,
         orcid,
       },
-      'ORCID API DELETE RECORD',
+      'ORCID API DELETE WORK RECORD',
     );
     const response = await fetch(url, {
       method: 'DELETE',
@@ -253,8 +250,14 @@ class OrcidApiService {
       let claims = await attestationService.getProtectedNodeClaims(nodeUuid);
       claims = claims.filter((claim) => claim.verifications > 0);
 
-      // TODO: if claims is empty remove orcid record
-      if (claims.length === 0) return;
+      if (claims.length === 0) {
+        const orcidPutCode = await prisma.orcidPutCodes.findUnique({
+          where: { orcid_uuid_reference: { orcid, uuid: nodeUuid, reference: PutcodeReference.PREPRINT } },
+        });
+
+        await orcidApiService.removeWorkRecord({ authToken, putCode: orcidPutCode, orcid: user.orcid });
+        return;
+      }
 
       const latestVersion = researchObject.versions[researchObject.versions.length - 1];
       const publicationDate = new Date(parseInt(latestVersion.time) * 1000).toLocaleDateString().replaceAll('/', '-');
@@ -270,8 +273,9 @@ class OrcidApiService {
         manifest: latestManifest,
       });
       const claimRecordPromises = claims.map((claim) => {
-        const claimedVersionNumber = claims[claims.length - 1].nodeVersion;
-        const claimedVersion = researchObject.versions[claimedVersionNumber];
+        const versionIndex = claims[claims.length - 1].nodeVersion;
+        const claimedVersionNumber = versionIndex + 1;
+        const claimedVersion = researchObject.versions[versionIndex];
         const publicationDate = new Date(parseInt(claimedVersion.time) * 1000)
           .toLocaleDateString()
           .replaceAll('/', '-');
diff --git a/desci-server/src/theGraph.ts b/desci-server/src/theGraph.ts
index 1e3cf9475..709b3b36e 100644
--- a/desci-server/src/theGraph.ts
+++ b/desci-server/src/theGraph.ts
@@ -77,7 +77,7 @@ export const getIndexedResearchObjects = async (
   For stream resolution, build a map to allow for also returning the UUID
   to match the format returned by the graph lookup
   */
-  const streamLookupMap: Record<string, string> = {};
+  let streamLookupMap: Record<string, string> = {};
   /** For legacy nodes, the graph lookup only needs the UUID */
   const legacyUuids = [];
 
@@ -100,6 +100,16 @@ export const getIndexedResearchObjects = async (
     }
   }
 
+  /**
+   * fallback to _getIndexedResearchObjects() when resolving locally
+   * because calls to getHistoryFromStreams() never returns due to
+   * RESOLVER_URL not configured for local dpid resolution
+   */
+  if (process.env.NODE_ENV === 'dev') {
+    legacyUuids.push(...paddedUuids);
+    streamLookupMap = {};
+  }
+
   let streamHistory = [];
   if (Object.keys(streamLookupMap).length > 0) {
     logger.info({ streamLookupMap }, 'Querying resolver for history');
@@ -109,7 +119,7 @@ export const getIndexedResearchObjects = async (
 
   let legacyHistory = [];
   if (legacyUuids.length > 0) {
-    logger.info({ legacyUuids }, 'Falling back to subgraph query for history');
+    logger.info({ legacyUuids, _urlSafeBase64s }, 'Falling back to subgraph query for history');
     legacyHistory = (await _getIndexedResearchObjects(legacyUuids)).researchObjects;
     logger.info({ legacyHistory }, 'Subgraph history for nodes found');
   }
@@ -201,7 +211,7 @@ export const _getIndexedResearchObjects = async (
 export const getTimeForTxOrCommits = async (txOrCommits: string[]): Promise<Record<string, string>> => {
   const isTx = (id: string) => id.startsWith('0x');
   const txIds = txOrCommits.filter(isTx);
-  const commitIdStrs = txOrCommits.filter(id => !isTx(id));
+  const commitIdStrs = txOrCommits.filter((id) => !isTx(id));
 
   const commitTimeMap = await getCommitTimestamps(commitIdStrs);
   const txTimeMap = await getTxTimestamps(txIds);
@@ -221,15 +231,15 @@ const getTxTimestamps = async (txIds: string[]): Promise<Record<string, string>>
   try {
     const graphTxTimestamps = await getTxTimeFromGraph(txIds);
     const timeMap = graphTxTimestamps.reduce(
-      (acc, { id, time }) => ({ ...acc, [id]: time}),
+      (acc, { id, time }) => ({ ...acc, [id]: time }),
       {} as Record<string, string>,
     );
     return timeMap;
   } catch (err) {
     logger.error({ txIds, err }, 'failed to get tx timestamps from graph, returning empty map');
     return {};
-  };
-}
+  }
+};
 
 type TransactionsWithTimestamp = {
   researchObjectVersions: { id: string; time: string }[];

From 85e042d4698565e43586bd25ddc12d4b474a3718 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Wed, 25 Sep 2024 10:44:32 +0000
Subject: [PATCH 41/81] adjust match filter to handle arrays

---
 .../src/services/ElasticSearchService.ts      | 32 ++++++++++++++-----
 1 file changed, 24 insertions(+), 8 deletions(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 100732aa3..9a9a84383 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -255,15 +255,31 @@ function buildFilter(filter: Filter) {
 
       return { match_phrase: { [filter.field]: { query: filter.value, analyzer: 'edge_ngram_analyzer' } } };
     case 'match':
-      const matchQuery = {
-        match: {
-          [filter.field]: {
-            query: filter.value,
-            operator: filter.matchLogic || 'or',
-            // ...(filter.fuzziness && { fuzziness: filter.fuzziness }),
+      let matchQuery;
+      if (Array.isArray(filter.value)) {
+        matchQuery = {
+          bool: {
+            should: filter.value.map((value) => ({
+              match: {
+                [filter.field]: {
+                  query: value,
+                  operator: filter.matchLogic || 'or',
+                },
+              },
+            })),
+            minimum_should_match: 1,
           },
-        },
-      };
+        };
+      } else {
+        matchQuery = {
+          match: {
+            [filter.field]: {
+              query: filter.value,
+              operator: filter.matchLogic || 'or',
+            },
+          },
+        };
+      }
 
       if (filter.field.includes('.') && !filter.field.includes('institutions')) {
         const [nestedPath, nestedField] = filter.field.split('.');

From 14e166ebfae9abec1e44fc740659979c07d6b4c6 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Thu, 26 Sep 2024 13:57:34 -0500
Subject: [PATCH 42/81] series of backend updates to support comments on node
 without ties to specific attestations/claim

---
 .../migration.sql                             | 14 +++++
 .../migration.sql                             |  8 +++
 desci-server/prisma/schema.prisma             | 16 ++++--
 .../src/controllers/attestations/comments.ts  | 19 +++++--
 .../attestations/recommendations.ts           |  3 +-
 .../src/controllers/nodes/comments.ts         | 35 ++++++++++++
 .../src/controllers/nodes/createDpid.ts       | 20 ++-----
 desci-server/src/controllers/nodes/index.ts   |  5 ++
 desci-server/src/controllers/raw/versions.ts  |  8 +--
 .../src/routes/v1/attestations/index.ts       |  2 +-
 .../src/routes/v1/attestations/schema.ts      | 39 +++++++++++--
 desci-server/src/routes/v1/nodes.ts           | 21 ++++---
 desci-server/src/services/Attestation.ts      | 57 ++++++++++++++-----
 desci-server/src/theGraph.ts                  | 20 +++++--
 14 files changed, 203 insertions(+), 64 deletions(-)
 create mode 100644 desci-server/prisma/migrations/20240925135142_add_uuid_and_visible_and_make_nodeattestation_id_optional/migration.sql
 create mode 100644 desci-server/prisma/migrations/20240926094958_remove_nodeid_column_from_annotation/migration.sql
 create mode 100644 desci-server/src/controllers/nodes/comments.ts

diff --git a/desci-server/prisma/migrations/20240925135142_add_uuid_and_visible_and_make_nodeattestation_id_optional/migration.sql b/desci-server/prisma/migrations/20240925135142_add_uuid_and_visible_and_make_nodeattestation_id_optional/migration.sql
new file mode 100644
index 000000000..2053e708a
--- /dev/null
+++ b/desci-server/prisma/migrations/20240925135142_add_uuid_and_visible_and_make_nodeattestation_id_optional/migration.sql
@@ -0,0 +1,14 @@
+-- DropForeignKey
+ALTER TABLE "Annotation" DROP CONSTRAINT "Annotation_nodeAttestationId_fkey";
+
+-- AlterTable
+ALTER TABLE "Annotation" ADD COLUMN     "nodeId" INTEGER,
+ADD COLUMN     "uuid" TEXT,
+ADD COLUMN     "visible" BOOLEAN NOT NULL DEFAULT true,
+ALTER COLUMN "nodeAttestationId" DROP NOT NULL;
+
+-- AddForeignKey
+ALTER TABLE "Annotation" ADD CONSTRAINT "Annotation_nodeAttestationId_fkey" FOREIGN KEY ("nodeAttestationId") REFERENCES "NodeAttestation"("id") ON DELETE SET NULL ON UPDATE CASCADE;
+
+-- AddForeignKey
+ALTER TABLE "Annotation" ADD CONSTRAINT "Annotation_uuid_fkey" FOREIGN KEY ("uuid") REFERENCES "Node"("uuid") ON DELETE SET NULL ON UPDATE CASCADE;
diff --git a/desci-server/prisma/migrations/20240926094958_remove_nodeid_column_from_annotation/migration.sql b/desci-server/prisma/migrations/20240926094958_remove_nodeid_column_from_annotation/migration.sql
new file mode 100644
index 000000000..38ae5b501
--- /dev/null
+++ b/desci-server/prisma/migrations/20240926094958_remove_nodeid_column_from_annotation/migration.sql
@@ -0,0 +1,8 @@
+/*
+  Warnings:
+
+  - You are about to drop the column `nodeId` on the `Annotation` table. All the data in the column will be lost.
+
+*/
+-- AlterTable
+ALTER TABLE "Annotation" DROP COLUMN "nodeId";
diff --git a/desci-server/prisma/schema.prisma b/desci-server/prisma/schema.prisma
index 8d18e432f..35a756c6e 100755
--- a/desci-server/prisma/schema.prisma
+++ b/desci-server/prisma/schema.prisma
@@ -50,6 +50,7 @@ model Node {
   DoiSubmissionQueue  DoiSubmissionQueue[]
   BookmarkedNode      BookmarkedNode[]
   DeferredEmails      DeferredEmails[]
+  Annotation          Annotation[]
 
   @@index([ownerId])
   @@index([uuid])
@@ -810,16 +811,19 @@ enum EmailType {
 
 //Comments on attestations
 model Annotation {
-  id                Int             @id @default(autoincrement())
+  id                Int              @id @default(autoincrement())
   type              AnnotationType
   body              String
-  highlights        Json[]          @default([])
-  links             String[]        @default([])
+  highlights        Json[]           @default([])
+  links             String[]         @default([])
   authorId          Int
-  author            User            @relation(fields: [authorId], references: [id])
-  nodeAttestationId Int
-  attestation       NodeAttestation @relation(fields: [nodeAttestationId], references: [id])
+  author            User             @relation(fields: [authorId], references: [id])
+  nodeAttestationId Int?
+  attestation       NodeAttestation? @relation(fields: [nodeAttestationId], references: [id])
   deferredEmailsId  Int?
+  uuid              String?
+  node              Node?            @relation(fields: [uuid], references: [uuid])
+  visible           Boolean          @default(true)
 }
 
 //An emoji reaction to a node
diff --git a/desci-server/src/controllers/attestations/comments.ts b/desci-server/src/controllers/attestations/comments.ts
index aebdd6e84..d50e97369 100644
--- a/desci-server/src/controllers/attestations/comments.ts
+++ b/desci-server/src/controllers/attestations/comments.ts
@@ -1,5 +1,5 @@
 import { HighlightBlock } from '@desci-labs/desci-models';
-import { ActionType, Annotation } from '@prisma/client';
+import { ActionType, Annotation, AnnotationType } from '@prisma/client';
 import { NextFunction, Request, Response } from 'express';
 import _ from 'lodash';
 import zod from 'zod';
@@ -13,7 +13,9 @@ import {
   asyncMap,
   attestationService,
   createCommentSchema,
+  ensureUuidEndsWithDot,
   logger as parentLogger,
+  prisma,
 } from '../../internal.js';
 import { saveInteraction } from '../../services/interactionLog.js';
 import { client } from '../../services/ipfs.js';
@@ -78,7 +80,7 @@ export const removeComment = async (req: Request<RemoveCommentBody, any, any>, r
 type AddCommentBody = zod.infer<typeof createCommentSchema>;
 
 export const addComment = async (req: Request<any, any, AddCommentBody['body']>, res: Response<AddCommentResponse>) => {
-  const { authorId, claimId, body, highlights, links } = req.body;
+  const { authorId, claimId, body, highlights, links, uuid, visible } = req.body;
   const user = (req as any).user;
 
   if (parseInt(authorId.toString()) !== user.id) throw new ForbiddenError();
@@ -89,6 +91,11 @@ export const addComment = async (req: Request<any, any, AddCommentBody['body']>,
     user: (req as any).user,
     body: req.body,
   });
+
+  if (uuid) {
+    const node = await prisma.node.findFirst({ where: { uuid: ensureUuidEndsWithDot(uuid) } });
+    if (!node) throw new NotFoundError('Node with uuid ${uuid} not found');
+  }
   logger.trace(`addComment`);
 
   let annotation: Annotation;
@@ -102,19 +109,23 @@ export const addComment = async (req: Request<any, any, AddCommentBody['body']>,
     });
     logger.info({ processedHighlights }, 'processedHighlights');
     annotation = await attestationService.createHighlight({
-      claimId: parseInt(claimId.toString()),
+      claimId: claimId && parseInt(claimId.toString()),
       authorId: user.id,
       comment: body,
       links,
       highlights: processedHighlights as unknown as HighlightBlock[],
+      visible,
+      uuid: ensureUuidEndsWithDot(uuid),
     });
     await saveInteraction(req, ActionType.ADD_COMMENT, { annotationId: annotation.id, claimId, authorId });
   } else {
     annotation = await attestationService.createComment({
-      claimId: parseInt(claimId.toString()),
+      claimId: claimId && parseInt(claimId.toString()),
       authorId: user.id,
       comment: body,
       links,
+      visible,
+      uuid: ensureUuidEndsWithDot(uuid),
     });
   }
   await saveInteraction(req, ActionType.ADD_COMMENT, { annotationId: annotation.id, claimId, authorId });
diff --git a/desci-server/src/controllers/attestations/recommendations.ts b/desci-server/src/controllers/attestations/recommendations.ts
index f20eb18b0..cea1b0d66 100644
--- a/desci-server/src/controllers/attestations/recommendations.ts
+++ b/desci-server/src/controllers/attestations/recommendations.ts
@@ -60,7 +60,6 @@ export const getValidatedAttestations = async (req: Request, res: Response, _nex
   logger.info({ communityName });
   const community = await communityService.findCommunityByNameOrSlug(communityName);
   if (!community) throw new NotFoundError('Community not found');
-  logger.info({ community });
 
   const attestations = await attestationService.getCommunityAttestations({
     communityId: community.id,
@@ -83,6 +82,6 @@ export const getValidatedRecommendations = async (req: Request, res: Response, _
     communityName: attestation.community.name,
     AttestationVersion: attestation.AttestationVersion[0],
   }));
-  logger.info({ attestations }, 'getValidatedRecommendations');
+  logger.info({ recommendations: attestations.length }, 'getValidatedRecommendations');
   return new SuccessResponse(response).send(res);
 };
diff --git a/desci-server/src/controllers/nodes/comments.ts b/desci-server/src/controllers/nodes/comments.ts
new file mode 100644
index 000000000..d9149b882
--- /dev/null
+++ b/desci-server/src/controllers/nodes/comments.ts
@@ -0,0 +1,35 @@
+import { Response, NextFunction } from 'express';
+import _ from 'lodash';
+import z from 'zod';
+
+import {
+  NotFoundError,
+  RequestWithNode,
+  SuccessResponse,
+  attestationService,
+  ensureUuidEndsWithDot,
+  getCommentsSchema,
+  logger,
+  prisma,
+} from '../../internal.js';
+
+export const getGeneralComments = async (req: RequestWithNode, res: Response, _next: NextFunction) => {
+  const { uuid } = req.params as z.infer<typeof getCommentsSchema>['params'];
+  const node = await prisma.node.findFirst({ where: { uuid: ensureUuidEndsWithDot(uuid) } });
+  if (!node) throw new NotFoundError("Can't comment on unknown research object");
+
+  const restrictVisibility = node.ownerId !== req?.user?.id;
+
+  logger.info({ restrictVisibility }, 'Query Comments');
+  const comments = await attestationService.getComments({
+    uuid: ensureUuidEndsWithDot(uuid),
+    ...(restrictVisibility && { visible: true }),
+  });
+
+  const data = comments.map((comment) => {
+    const author = _.pick(comment.author, ['id', 'name', 'orcid']);
+    return { ...comment, author, highlights: comment.highlights.map((h) => JSON.parse(h as string)) };
+  });
+
+  return new SuccessResponse(data).send(res);
+};
diff --git a/desci-server/src/controllers/nodes/createDpid.ts b/desci-server/src/controllers/nodes/createDpid.ts
index 2f837387e..8bb5cbf35 100644
--- a/desci-server/src/controllers/nodes/createDpid.ts
+++ b/desci-server/src/controllers/nodes/createDpid.ts
@@ -7,11 +7,11 @@ import { ethers } from 'ethers';
 import { Response } from 'express';
 import { Logger } from 'pino';
 
+import { CERAMIC_API_URL } from '../../config/index.js';
 import { logger as parentLogger } from '../../logger.js';
 import { RequestWithNode } from '../../middleware/authorisation.js';
-import { setDpidAlias } from '../../services/nodeManager.js';
-import { CERAMIC_API_URL } from '../../config/index.js';
 import { getAliasRegistry, getHotWallet, getRegistryOwnerWallet } from '../../services/chain.js';
+import { setDpidAlias } from '../../services/nodeManager.js';
 
 type DpidResponse = DpidSuccessResponse | DpidErrorResponse;
 export type DpidSuccessResponse = {
@@ -56,9 +56,7 @@ export const createDpid = async (req: RequestWithNode, res: Response<DpidRespons
   }
 };
 
-export const getOrCreateDpid = async (
-  streamId: string,
-): Promise<number> => {
+export const getOrCreateDpid = async (streamId: string): Promise<number> => {
   const logger = parentLogger.child({
     module: 'NODE::mintDpid',
     ceramicStream: streamId,
@@ -97,10 +95,7 @@ export const getOrCreateDpid = async (
  * Note: this method in the registry contract is only callable by contract
  * owner, so this is not generally available.
  */
-export const upgradeDpid = async (
-  dpid: number,
-  ceramicStream: string
-): Promise<number> => {
+export const upgradeDpid = async (dpid: number, ceramicStream: string): Promise<number> => {
   const logger = parentLogger.child({
     module: 'NODE::upgradeDpid',
     ceramicStream,
@@ -130,12 +125,7 @@ export const upgradeDpid = async (
  * This should be checked before upgrading a dPID, to make sure
  * the new stream accurately represents the publish history.
  */
-const validateHistory = async (
-  dpid: number,
-  ceramicStream: string,
-  registry: DpidAliasRegistry,
-  logger: Logger
-) => {
+const validateHistory = async (dpid: number, ceramicStream: string, registry: DpidAliasRegistry, logger: Logger) => {
   const client = newCeramicClient(CERAMIC_API_URL);
   const legacyEntry = await registry.legacyLookup(dpid);
 
diff --git a/desci-server/src/controllers/nodes/index.ts b/desci-server/src/controllers/nodes/index.ts
index 08a710fbf..886f695b0 100755
--- a/desci-server/src/controllers/nodes/index.ts
+++ b/desci-server/src/controllers/nodes/index.ts
@@ -13,3 +13,8 @@ export * from './nodesCover.js';
 export * from './manager.js';
 export * from './metadata.js';
 export * from './doi.js';
+export * from './comments.js';
+export * from './sharedNodes.js';
+export * from './searchNodes.js';
+export * from './versionDetails.js';
+export * from './thumbnails.js';
diff --git a/desci-server/src/controllers/raw/versions.ts b/desci-server/src/controllers/raw/versions.ts
index 33ca75b87..cd63bc00b 100644
--- a/desci-server/src/controllers/raw/versions.ts
+++ b/desci-server/src/controllers/raw/versions.ts
@@ -5,7 +5,7 @@ import { getIndexedResearchObjects, IndexedResearchObject } from '../../theGraph
 import { ensureUuidEndsWithDot } from '../../utils.js';
 
 const logger = parentLogger.child({
-  module: "RAW::versionsController"
+  module: 'RAW::versionsController',
 });
 
 /**
@@ -19,12 +19,10 @@ export const versions = async (req: Request, res: Response, next: NextFunction)
     const { researchObjects } = await getIndexedResearchObjects([uuid]);
     result = researchObjects[0];
   } catch (err) {
-    logger.error(
-      { result, err }, `[ERROR] graph lookup fail ${err.message}`,
-    );
+    logger.error({ result, err }, `[ERROR] graph lookup fail ${err.message}`);
   }
   if (!result) {
-    logger.warn({ uuid, result }, "could not find indexed versions");
+    logger.warn({ uuid, result }, 'could not find indexed versions');
     res.status(404).send({ ok: false, msg: `could not locate uuid ${uuid}` });
     return;
   }
diff --git a/desci-server/src/routes/v1/attestations/index.ts b/desci-server/src/routes/v1/attestations/index.ts
index aa16950bd..9c17c7e04 100644
--- a/desci-server/src/routes/v1/attestations/index.ts
+++ b/desci-server/src/routes/v1/attestations/index.ts
@@ -62,7 +62,7 @@ router.post('/claim', [ensureUser, validate(claimAttestationSchema)], asyncHandl
 router.post('/unclaim', [ensureUser, validate(removeClaimSchema)], asyncHandler(removeClaim));
 router.post('/claimAll', [ensureUser, validate(claimEntryAttestationsSchema)], asyncHandler(claimEntryRequirements));
 
-router.post('/comment', [ensureUser, validate(createCommentSchema)], asyncHandler(addComment));
+router.post('/comments', [ensureUser, validate(createCommentSchema)], asyncHandler(addComment));
 router.post('/reaction', [ensureUser, validate(addReactionSchema)], asyncHandler(addReaction));
 router.post('/verification', [ensureUser, validate(addVerificationSchema)], asyncHandler(addVerification));
 
diff --git a/desci-server/src/routes/v1/attestations/schema.ts b/desci-server/src/routes/v1/attestations/schema.ts
index 7a8ec37e5..e07f904ab 100644
--- a/desci-server/src/routes/v1/attestations/schema.ts
+++ b/desci-server/src/routes/v1/attestations/schema.ts
@@ -34,22 +34,47 @@ export const getAttestationCommentsSchema = z.object({
   }),
 });
 
+export const getCommentsSchema = z.object({
+  params: z.object({
+    // quickly disqualify false uuid strings
+    uuid: z.string().min(10),
+  }),
+});
+
+const dpidPathRegexPlusLocalResolver =
+  /^https?:\/\/(?<domain>dev-beta\.dpid\.org|beta\.dpid\.org|localhost:5460)\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/gm;
+
 export const dpidPathRegex =
-  /^https:\/\/(?<domain>dev-beta|beta)\.dpid\.org\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/m;
-// /^https:\/\/beta\.dpid\.org\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/m;
+  process.env.NODE_ENV === 'dev'
+    ? dpidPathRegexPlusLocalResolver
+    : /^https:\/\/(?<domain>dev-beta|beta)\.dpid\.org\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/m;
+
+export const uuidPathRegex =
+  /^https?:\/\/(?<domain>nodes-dev.desci.com|nodes.desci.com|localhost:3000)\/node\/(?<uuid>[^/^.\s]+)(?<version>\/v\d+)?(?<path>\/root.*)?/m;
 
 export const dpidPathSchema = z
   .string()
   .url()
   .refine((link) => dpidPathRegex.test(link), { message: 'Invalid dpid link' });
 
-// TODO: UPDATE TO A UNION OF CodeHighlightBlock and PdfHighlightBlock
+export const uuidPathSchema = z
+  .string()
+  .url()
+  .refine((link) => uuidPathRegex.test(link), { message: 'Invalid uuid link' });
+
+export const resourcePathSchema = z
+  .string()
+  .url()
+  .refine((link) => uuidPathRegex.test(link) || dpidPathRegex.test(link), {
+    message: 'Invalid Resource link',
+  });
+
 const pdfHighlightSchema = z
   .object({
     id: z.string(),
     text: z.string().optional(),
     image: z.string().optional(),
-    path: dpidPathSchema,
+    path: resourcePathSchema,
     startX: z.coerce.number(),
     startY: z.coerce.number(),
     endX: z.coerce.number(),
@@ -81,7 +106,7 @@ const pdfHighlightSchema = z
 const codeHighlightSchema = z.object({
   id: z.string(),
   text: z.string().optional(),
-  path: dpidPathSchema,
+  path: resourcePathSchema,
   cid: z.string(),
   startLine: z.coerce.number(),
   endLine: z.coerce.number(),
@@ -93,7 +118,7 @@ const highlightBlockSchema = z.union([pdfHighlightSchema, codeHighlightSchema]);
 const commentSchema = z
   .object({
     authorId: z.coerce.number(),
-    claimId: z.coerce.number(),
+    claimId: z.coerce.number().optional(),
     body: z.string(),
     links: z
       .string()
@@ -101,6 +126,8 @@ const commentSchema = z
       .refine((links) => links.every((link) => dpidPathRegex.test(link)))
       .optional(),
     highlights: z.array(highlightBlockSchema).optional(),
+    uuid: z.string().optional(),
+    visible: z.boolean().default(true),
   })
   .refine((comment) => comment.body?.length > 0 || !!comment?.highlights?.length, {
     message: 'Either Comment body or highlights is required',
diff --git a/desci-server/src/routes/v1/nodes.ts b/desci-server/src/routes/v1/nodes.ts
index 9a0b5ddab..d6281514e 100755
--- a/desci-server/src/routes/v1/nodes.ts
+++ b/desci-server/src/routes/v1/nodes.ts
@@ -27,7 +27,6 @@ import {
   draftUpdate,
   list,
   draftAddComponent,
-  retrieveDoi,
   proxyPdf,
   draftCreate,
   consent,
@@ -50,15 +49,21 @@ import {
   automateManuscriptDoi,
   attachDoiSchema,
   retrieveNodeDoi,
+  prepublish,
+  getGeneralComments,
+  listSharedNodes,
+  searchNodes,
+  versionDetails,
+  thumbnails,
 } from '../../controllers/nodes/index.js';
 import { retrieveTitle } from '../../controllers/nodes/legacyManifestApi.js';
 import { preparePublishPackage } from '../../controllers/nodes/preparePublishPackage.js';
-import { prepublish } from '../../controllers/nodes/prepublish.js';
-import { searchNodes } from '../../controllers/nodes/searchNodes.js';
-import { listSharedNodes } from '../../controllers/nodes/sharedNodes.js';
-import { thumbnails } from '../../controllers/nodes/thumbnails.js';
-import { versionDetails } from '../../controllers/nodes/versionDetails.js';
-import { asyncHandler, attachUser, validate, ensureUserIfPresent } from '../../internal.js';
+// import { prepublish } from '../../controllers/nodes/prepublish.js';
+// import { searchNodes } from '../../controllers/nodes/searchNodes.js';
+// import { listSharedNodes } from '../../controllers/nodes/sharedNodes.js';
+// import { thumbnails } from '../../controllers/nodes/thumbnails.js';
+// import { versionDetails } from '../../controllers/nodes/versionDetails.js';
+import { asyncHandler, attachUser, validate, ensureUserIfPresent, getCommentsSchema } from '../../internal.js';
 import { ensureNodeAccess, ensureWriteNodeAccess } from '../../middleware/authorisation.js';
 import { ensureUser } from '../../middleware/permissions.js';
 
@@ -133,6 +138,8 @@ router.post(
 
 router.delete('/:uuid', [ensureUser], deleteNode);
 
+router.get('/:uuid/comments', [validate(getCommentsSchema), attachUser], asyncHandler(getGeneralComments));
+
 router.get('/feed', [], feed);
 
 router.get('/legacy/retrieveTitle', retrieveTitle);
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index 8a7fbbb1a..c459ca777 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -581,21 +581,27 @@ export class AttestationService {
     authorId,
     comment,
     links,
+    uuid,
+    visible = true,
   }: {
-    claimId: number;
+    claimId?: number;
     authorId: number;
     comment: string;
     links: string[];
+    uuid?: string;
+    visible: boolean;
   }) {
     assert(authorId > 0, 'Error: authorId is zero');
-    assert(claimId > 0, 'Error: claimId is zero');
+    claimId && assert(claimId > 0, 'Error: claimId is zero');
 
-    const claim = await this.findClaimById(claimId);
-    if (!claim) throw new ClaimNotFoundError();
+    if (claimId) {
+      const claim = await this.findClaimById(claimId);
+      if (!claim) throw new ClaimNotFoundError();
 
-    const attestation = await this.findAttestationById(claim.attestationId);
-    if (attestation.protected) {
-      await this.assertUserIsMember(authorId, attestation.communityId);
+      const attestation = await this.findAttestationById(claim.attestationId);
+      if (attestation.protected) {
+        await this.assertUserIsMember(authorId, attestation.communityId);
+      }
     }
 
     const data: Prisma.AnnotationUncheckedCreateInput = {
@@ -604,6 +610,8 @@ export class AttestationService {
       nodeAttestationId: claimId,
       body: comment,
       links,
+      uuid,
+      visible,
     };
     return this.createAnnotation(data);
   }
@@ -614,22 +622,28 @@ export class AttestationService {
     comment,
     highlights,
     links,
+    uuid,
+    visible,
   }: {
     claimId: number;
     authorId: number;
     comment: string;
     links: string[];
     highlights: HighlightBlock[];
+    uuid?: string;
+    visible: boolean;
   }) {
     assert(authorId > 0, 'Error: authorId is zero');
-    assert(claimId > 0, 'Error: claimId is zero');
+    claimId && assert(claimId > 0, 'Error: claimId is zero');
 
-    const claim = await this.findClaimById(claimId);
-    if (!claim) throw new ClaimNotFoundError();
+    if (claimId) {
+      const claim = await this.findClaimById(claimId);
+      if (!claim) throw new ClaimNotFoundError();
 
-    const attestation = await this.findAttestationById(claim.attestationId);
-    if (attestation.protected) {
-      await this.assertUserIsMember(authorId, attestation.communityId);
+      const attestation = await this.findAttestationById(claim.attestationId);
+      if (attestation.protected) {
+        await this.assertUserIsMember(authorId, attestation.communityId);
+      }
     }
 
     const data: Prisma.AnnotationUncheckedCreateInput = {
@@ -639,6 +653,8 @@ export class AttestationService {
       body: comment,
       links,
       highlights: highlights.map((h) => JSON.stringify(h)),
+      uuid,
+      visible,
     };
     return this.createAnnotation(data);
   }
@@ -728,6 +744,21 @@ export class AttestationService {
     });
   }
 
+  async getComments(filter: Prisma.AnnotationWhereInput) {
+    logger.info({ filter }, 'GET COMMENTS');
+    return prisma.annotation.findMany({
+      where: filter,
+      include: {
+        author: true,
+        attestation: {
+          include: {
+            attestationVersion: { select: { name: true, description: true, image_url: true, createdAt: true } },
+          },
+        },
+      },
+    });
+  }
+
   /**
    * List all attestations and their engagements metrics across all claimed attestations
    * @returns AttestationWithEngagement[]
diff --git a/desci-server/src/theGraph.ts b/desci-server/src/theGraph.ts
index 1e3cf9475..15e602afa 100644
--- a/desci-server/src/theGraph.ts
+++ b/desci-server/src/theGraph.ts
@@ -77,7 +77,7 @@ export const getIndexedResearchObjects = async (
   For stream resolution, build a map to allow for also returning the UUID
   to match the format returned by the graph lookup
   */
-  const streamLookupMap: Record<string, string> = {};
+  let streamLookupMap: Record<string, string> = {};
   /** For legacy nodes, the graph lookup only needs the UUID */
   const legacyUuids = [];
 
@@ -100,6 +100,16 @@ export const getIndexedResearchObjects = async (
     }
   }
 
+  /**
+   * fallback to _getIndexedResearchObjects() when resolving locally
+   * because calls to getHistoryFromStreams() never returns due to
+   * RESOLVER_URL not configured for local dpid resolution
+   */
+  if (process.env.NODE_ENV === 'dev') {
+    legacyUuids.push(...paddedUuids);
+    streamLookupMap = {};
+  }
+
   let streamHistory = [];
   if (Object.keys(streamLookupMap).length > 0) {
     logger.info({ streamLookupMap }, 'Querying resolver for history');
@@ -201,7 +211,7 @@ export const _getIndexedResearchObjects = async (
 export const getTimeForTxOrCommits = async (txOrCommits: string[]): Promise<Record<string, string>> => {
   const isTx = (id: string) => id.startsWith('0x');
   const txIds = txOrCommits.filter(isTx);
-  const commitIdStrs = txOrCommits.filter(id => !isTx(id));
+  const commitIdStrs = txOrCommits.filter((id) => !isTx(id));
 
   const commitTimeMap = await getCommitTimestamps(commitIdStrs);
   const txTimeMap = await getTxTimestamps(txIds);
@@ -221,15 +231,15 @@ const getTxTimestamps = async (txIds: string[]): Promise<Record<string, string>>
   try {
     const graphTxTimestamps = await getTxTimeFromGraph(txIds);
     const timeMap = graphTxTimestamps.reduce(
-      (acc, { id, time }) => ({ ...acc, [id]: time}),
+      (acc, { id, time }) => ({ ...acc, [id]: time }),
       {} as Record<string, string>,
     );
     return timeMap;
   } catch (err) {
     logger.error({ txIds, err }, 'failed to get tx timestamps from graph, returning empty map');
     return {};
-  };
-}
+  }
+};
 
 type TransactionsWithTimestamp = {
   researchObjectVersions: { id: string; time: string }[];

From 56ee6069087a3d1cbc5d46c340d01a6c32b15852 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Fri, 27 Sep 2024 10:12:21 +0200
Subject: [PATCH 43/81] ceramic: enable metrics scraping endpoiunts, fixed dev
 deployment strat, bump dev to anchor healing rc

---
 .ceramicDev.config.json                  |  7 +--
 ceramic-k8s/ceramic_deployment_dev.yaml  | 58 +++++++++++++++---------
 ceramic-k8s/ceramic_deployment_prod.yaml | 50 +++++++++++++-------
 docker-compose.dev.yml                   |  1 +
 4 files changed, 74 insertions(+), 42 deletions(-)

diff --git a/.ceramicDev.config.json b/.ceramicDev.config.json
index 3f5d12749..d49f91f76 100644
--- a/.ceramicDev.config.json
+++ b/.ceramicDev.config.json
@@ -1,5 +1,5 @@
 {
-  "anchor": { },
+  "anchor": {},
   "http-api": {
     "cors-allowed-origins": [
       ".*"
@@ -16,8 +16,8 @@
     "log-level": 2
   },
   "metrics": {
-    "metrics-exporter-enabled": false,
-    "metrics-port": 9090
+    "prometheus-exporter-enabled": true,
+    "prometheus-exporter-port": 9464
   },
   "network": {
     "name": "inmemory"
@@ -33,3 +33,4 @@
     "models": []
   }
 }
+
diff --git a/ceramic-k8s/ceramic_deployment_dev.yaml b/ceramic-k8s/ceramic_deployment_dev.yaml
index 68f3fd464..5aa80dcdf 100644
--- a/ceramic-k8s/ceramic_deployment_dev.yaml
+++ b/ceramic-k8s/ceramic_deployment_dev.yaml
@@ -11,10 +11,7 @@ spec:
     matchLabels:
       App: JsCeramicDev
   strategy:
-    rollingUpdate:
-      maxSurge: 25%
-      maxUnavailable: 25%
-    type: RollingUpdate
+    type: Recreate
   template:
     metadata:
       annotations:
@@ -41,7 +38,9 @@ spec:
         App: JsCeramicDev
     spec:
       containers:
-        - image: ceramicnetwork/js-ceramic:6.5.0
+          # Enables a fix allowing us to heal dropped anchors on genesis commits:
+          # https://github.com/ceramicnetwork/js-ceramic/pull/3280
+        - image: ceramicnetwork/js-ceramic:6.6.0-rc.0
           name: js-ceramic-dev
           command: ["/bin/bash", "-c"]
           args:
@@ -49,6 +48,8 @@ spec:
           ports:
             - containerPort: 7007
               name: http-api
+            - containerPort: 9464
+              name: metrics
           resources:
             limits:
               cpu: 2
@@ -70,9 +71,38 @@ spec:
               port: http-api
             failureThreshold: 60
             periodSeconds: 1
-
       serviceAccountName: "vault-auth"
 ---
+apiVersion: v1
+kind: Service
+metadata:
+  name: js-ceramic-dev-service-internal
+  labels:
+    App: JsCeramicDev
+spec:
+  type: ClusterIP
+  selector:
+    App: JsCeramicDev
+  ports:
+    - name: metrics
+      port: 9464
+      targetPort: metrics
+---
+apiVersion: v1
+kind: Service
+metadata:
+  name: public-js-ceramic-dev-service
+  labels:
+    App: JsCeramicDev
+spec:
+  type: LoadBalancer
+  selector:
+    App: JsCeramicDev
+  ports:
+    - protocol: TCP
+      port: 80
+      targetPort: http-api
+---
 apiVersion: networking.k8s.io/v1
 kind: Ingress
 metadata:
@@ -91,19 +121,3 @@ spec:
                 name: public-js-ceramic-dev-service
                 port:
                   number: 80
----
-apiVersion: v1
-kind: Service
-metadata:
-  name: public-js-ceramic-dev-service
-  labels:
-    App: JsCeramicDev
-spec:
-  type: LoadBalancer
-  selector:
-    App: JsCeramicDev
-  ports:
-    - protocol: TCP
-      name: http
-      port: 80
-      targetPort: 7007
diff --git a/ceramic-k8s/ceramic_deployment_prod.yaml b/ceramic-k8s/ceramic_deployment_prod.yaml
index 7ed15bb76..f2c0352e3 100644
--- a/ceramic-k8s/ceramic_deployment_prod.yaml
+++ b/ceramic-k8s/ceramic_deployment_prod.yaml
@@ -73,6 +73,8 @@ spec:
           ports:
             - containerPort: 7007
               name: http-api
+            - containerPort: 9464
+              name: metrics
           resources:
             limits:
               cpu: 2
@@ -107,9 +109,39 @@ spec:
         - name: ceramic-prod-persistent-storage
           persistentVolumeClaim:
             claimName: ceramic-prod-persistent-storage-pvc
-
       serviceAccountName: "vault-auth"
 ---
+apiVersion: v1
+kind: Service
+metadata:
+  name: js-ceramic-prod-service-internal
+  labels:
+    App: JsCeramicProd
+spec:
+  type: ClusterIP
+  selector:
+    App: JsCeramicProd
+  ports:
+    - name: metrics
+      port: 9464
+      targetPort: metrics
+---
+apiVersion: v1
+kind: Service
+metadata:
+  name: public-js-ceramic-prod-service
+  labels:
+    App: JsCeramicProd
+spec:
+  type: LoadBalancer
+  selector:
+    App: JsCeramicProd
+  ports:
+    - protocol: TCP
+      name: http
+      port: 80
+      targetPort: http-api
+---
 apiVersion: networking.k8s.io/v1
 kind: Ingress
 metadata:
@@ -128,19 +160,3 @@ spec:
                 name: public-js-ceramic-prod-service
                 port:
                   number: 80
----
-apiVersion: v1
-kind: Service
-metadata:
-  name: public-js-ceramic-prod-service
-  labels:
-    App: JsCeramicProd
-spec:
-  type: LoadBalancer
-  selector:
-    App: JsCeramicProd
-  ports:
-    - protocol: TCP
-      name: http
-      port: 80
-      targetPort: 7007
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index faba1ceca..6302874a1 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -188,6 +188,7 @@ services:
     container_name: ceramic
     ports:
       - "7007:7007"
+      - "9464:9464"
     environment:
       NODE_ENV: production
       CERAMIC_PUBSUB_QPS_LIMIT: 500

From 30fa43a86d7a749c4cce58e1c446a79dbd10bcb1 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Fri, 27 Sep 2024 03:17:11 -0500
Subject: [PATCH 44/81] fix type errors in tests

---
 desci-server/test/integration/Attestation.test.ts | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/desci-server/test/integration/Attestation.test.ts b/desci-server/test/integration/Attestation.test.ts
index a6a111899..91fb4310b 100644
--- a/desci-server/test/integration/Attestation.test.ts
+++ b/desci-server/test/integration/Attestation.test.ts
@@ -852,6 +852,7 @@ describe.only('Attestations Service', async () => {
         claimId: claim.id,
         authorId: users[1].id,
         comment: 'Love the attestation',
+        visible: true,
       });
     });
 
@@ -1044,6 +1045,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim.id,
         authorId: users[2].id,
         comment: 'I love this game',
+        visible: true,
       });
 
       // verify one claims for node 2 attestations
@@ -1054,6 +1056,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
     });
 
@@ -1198,6 +1201,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim.id,
         authorId: users[2].id,
         comment: 'I love this game',
+        visible: true,
       });
 
       // verify one claims for node 2 attestations
@@ -1208,6 +1212,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createReaction({
         claimId: claim2.id,
@@ -1361,6 +1366,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim.id,
         authorId: users[2].id,
         comment: 'I love this game',
+        visible: true,
       });
 
       // verify one claims for node 2 attestations
@@ -1372,12 +1378,14 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createComment({
         links: [],
         claimId: fairMetadataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createReaction({
         claimId: claim2.id,
@@ -1397,6 +1405,7 @@ describe.only('Attestations Service', async () => {
         claimId: localClaim.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createReaction({
         claimId: localClaim.id,
@@ -1793,6 +1802,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim.id,
         authorId: users[2].id,
         comment: 'I love this game',
+        visible: true,
       });
 
       // verify one claims for node 2 attestations
@@ -1804,12 +1814,14 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createComment({
         links: [],
         claimId: fairMetadataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createReaction({
         claimId: claim2.id,
@@ -1829,6 +1841,7 @@ describe.only('Attestations Service', async () => {
         claimId: localClaim.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
       await attestationService.createReaction({
         claimId: localClaim.id,
@@ -2003,6 +2016,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim.id,
         authorId: users[2].id,
         comment: 'I love this game',
+        visible: true,
       });
 
       // verify one claims for node 2 attestations
@@ -2013,6 +2027,7 @@ describe.only('Attestations Service', async () => {
         claimId: openDataAttestationClaim2.id,
         authorId: users[3].id,
         comment: 'I love this guy',
+        visible: true,
       });
     });
 

From eee73da5d118a5f055ccbcf73dbb20f8e7f2a27b Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Fri, 27 Sep 2024 05:31:43 -0500
Subject: [PATCH 45/81] fix: failing tests

---
 desci-server/test/integration/Attestation.test.ts | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/desci-server/test/integration/Attestation.test.ts b/desci-server/test/integration/Attestation.test.ts
index 91fb4310b..1ecd8ba62 100644
--- a/desci-server/test/integration/Attestation.test.ts
+++ b/desci-server/test/integration/Attestation.test.ts
@@ -133,7 +133,7 @@ const clearDatabase = async () => {
   await prisma.$queryRaw`TRUNCATE TABLE "Node" CASCADE;`;
 };
 
-describe.only('Attestations Service', async () => {
+describe('Attestations Service', async () => {
   let baseManifest: ResearchObjectV1;
   let baseManifestCid: string;
   let users: User[];
@@ -2259,7 +2259,7 @@ describe.only('Attestations Service', async () => {
         body: 'review 1',
       };
       let res = await request(app)
-        .post(`/v1/attestations/comment`)
+        .post(`/v1/attestations/comments`)
         .set('authorization', memberAuthHeaderVal1)
         .send(body);
       expect(res.statusCode).to.equal(200);
@@ -2269,7 +2269,7 @@ describe.only('Attestations Service', async () => {
         claimId: openCodeClaim.id,
         body: 'review 2',
       };
-      res = await request(app).post(`/v1/attestations/comment`).set('authorization', memberAuthHeaderVal2).send(body);
+      res = await request(app).post(`/v1/attestations/comments`).set('authorization', memberAuthHeaderVal2).send(body);
       expect(res.statusCode).to.equal(200);
 
       const comments = await attestationService.getAllClaimComments({ nodeAttestationId: openCodeClaim.id });
@@ -2280,7 +2280,7 @@ describe.only('Attestations Service', async () => {
 
     it('should prevent non community members from reviewing a protected attestation(claim)', async () => {
       const apiResponse = await request(app)
-        .post(`/v1/attestations/comment`)
+        .post(`/v1/attestations/comments`)
         .set('authorization', UserAuthHeaderVal)
         .send({
           authorId: users[1].id,

From 9eff3f540cb5954fa5e2bbbd650f14403364f160 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Fri, 27 Sep 2024 09:56:32 -0500
Subject: [PATCH 46/81] transform private hightlights when a node is published

---
 .../src/controllers/attestations/comments.ts  |  4 +-
 .../src/controllers/nodes/prepublish.ts       |  1 +
 desci-server/src/controllers/nodes/publish.ts | 16 ++++++
 .../src/routes/v1/attestations/schema.ts      | 16 ++++--
 desci-server/src/services/Attestation.ts      | 57 ++++++++++++++++++-
 5 files changed, 87 insertions(+), 7 deletions(-)

diff --git a/desci-server/src/controllers/attestations/comments.ts b/desci-server/src/controllers/attestations/comments.ts
index d50e97369..343bdc472 100644
--- a/desci-server/src/controllers/attestations/comments.ts
+++ b/desci-server/src/controllers/attestations/comments.ts
@@ -115,7 +115,7 @@ export const addComment = async (req: Request<any, any, AddCommentBody['body']>,
       links,
       highlights: processedHighlights as unknown as HighlightBlock[],
       visible,
-      uuid: ensureUuidEndsWithDot(uuid),
+      ...(uuid && { uuid: ensureUuidEndsWithDot(uuid) }),
     });
     await saveInteraction(req, ActionType.ADD_COMMENT, { annotationId: annotation.id, claimId, authorId });
   } else {
@@ -125,7 +125,7 @@ export const addComment = async (req: Request<any, any, AddCommentBody['body']>,
       comment: body,
       links,
       visible,
-      uuid: ensureUuidEndsWithDot(uuid),
+      ...(uuid && { uuid: ensureUuidEndsWithDot(uuid) }),
     });
   }
   await saveInteraction(req, ActionType.ADD_COMMENT, { annotationId: annotation.id, claimId, authorId });
diff --git a/desci-server/src/controllers/nodes/prepublish.ts b/desci-server/src/controllers/nodes/prepublish.ts
index 85222474f..30547f81c 100644
--- a/desci-server/src/controllers/nodes/prepublish.ts
+++ b/desci-server/src/controllers/nodes/prepublish.ts
@@ -82,6 +82,7 @@ export const prepublish = async (req: RequestWithNode, res: Response<PrepublishR
       skipDuplicates: true,
     });
 
+    logger.info({ nodeFileTreeDagCid }, 'publishDraftComments::Root');
     logger.info(
       `[Prepublish DAG Skeleton Refs] Created ${createdPublicRefs.count} public data refs for node ${node.id}`,
     );
diff --git a/desci-server/src/controllers/nodes/publish.ts b/desci-server/src/controllers/nodes/publish.ts
index aa91bd7a8..a63b08815 100644
--- a/desci-server/src/controllers/nodes/publish.ts
+++ b/desci-server/src/controllers/nodes/publish.ts
@@ -3,6 +3,7 @@ import { ActionType, Node, Prisma, PublishTaskQueue, PublishTaskQueueStatus, Use
 import { Request, Response, NextFunction } from 'express';
 
 import { prisma } from '../../client.js';
+import { attestationService } from '../../internal.js';
 import { logger as parentLogger } from '../../logger.js';
 import { getManifestByCid } from '../../services/data/processing.js';
 import { getTargetDpidUrl } from '../../services/fixDpid.js';
@@ -160,6 +161,21 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
 
     updateAssociatedAttestations(node.uuid, dpidAlias ? dpidAlias.toString() : manifest.dpid?.id);
 
+    const root = await prisma.publicDataReference.findFirst({
+      where: { nodeId: node.id, root: true, userId: owner.id },
+      orderBy: { updatedAt: 'desc' },
+    });
+    logger.info({ root }, 'publishDraftComments::Root');
+    // publish draft comments
+    await attestationService.publishDraftComments({
+      node,
+      userId: owner.id,
+      dpidAlias: dpidAlias ?? parseInt(manifest.dpid?.id),
+      rootCid: root.rootCid,
+      // todo: get version number
+      version: 0,
+    });
+
     return res.send({
       ok: true,
       dpid: dpidAlias ?? parseInt(manifest.dpid?.id),
diff --git a/desci-server/src/routes/v1/attestations/schema.ts b/desci-server/src/routes/v1/attestations/schema.ts
index e07f904ab..5e1721e5e 100644
--- a/desci-server/src/routes/v1/attestations/schema.ts
+++ b/desci-server/src/routes/v1/attestations/schema.ts
@@ -1,5 +1,7 @@
 import { z } from 'zod';
 
+import { logger } from '../../../logger.js';
+
 const communityId = z.coerce.number();
 const dpid = z.coerce.number();
 
@@ -42,7 +44,7 @@ export const getCommentsSchema = z.object({
 });
 
 const dpidPathRegexPlusLocalResolver =
-  /^https?:\/\/(?<domain>dev-beta\.dpid\.org|beta\.dpid\.org|localhost:5460)\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/gm;
+  /^https?:\/\/(?<domain>dev-beta\.dpid\.org|beta\.dpid\.org|localhost:5460)\/(?<dpid>\d+)\/(?<version>v\d+)\/(?<path>\S+.*)?/m;
 
 export const dpidPathRegex =
   process.env.NODE_ENV === 'dev'
@@ -65,9 +67,15 @@ export const uuidPathSchema = z
 export const resourcePathSchema = z
   .string()
   .url()
-  .refine((link) => uuidPathRegex.test(link) || dpidPathRegex.test(link), {
-    message: 'Invalid Resource link',
-  });
+  .refine(
+    (link) => {
+      logger.info({ uuidPathRegex: uuidPathRegex.source, dpidPathRegex: dpidPathRegex.source }, 'REGEX');
+      return uuidPathRegex.test(link) || dpidPathRegex.test(link);
+    },
+    {
+      message: 'Invalid Resource link',
+    },
+  );
 
 const pdfHighlightSchema = z
   .object({
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index c459ca777..880de3d9b 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -1,7 +1,7 @@
 import assert from 'assert';
 
 import { HighlightBlock } from '@desci-labs/desci-models';
-import { AnnotationType, Attestation, Prisma, User } from '@prisma/client';
+import { AnnotationType, Attestation, Node, Prisma, User } from '@prisma/client';
 import sgMail from '@sendgrid/mail';
 import _ from 'lodash';
 
@@ -20,8 +20,10 @@ import {
   NotFoundError,
   VerificationError,
   VerificationNotFoundError,
+  asyncMap,
   ensureUuidEndsWithDot,
   logger as parentLogger,
+  uuidPathRegex,
 } from '../internal.js';
 import { communityService } from '../internal.js';
 import { AttestationClaimedEmailHtml } from '../templates/emails/utils/emailRenderer.js';
@@ -659,6 +661,59 @@ export class AttestationService {
     return this.createAnnotation(data);
   }
 
+  /**
+   * Iterate on all hidden comments and check if highlights path
+   * have been published then update comment to become visible
+   */
+  async publishDraftComments({
+    userId,
+    node,
+    dpidAlias,
+    version,
+    rootCid,
+  }: {
+    userId: number;
+    node: Node;
+    dpidAlias: number;
+    version: number;
+    rootCid: string;
+  }) {
+    const dpidUrl = process.env.DPID_URL_OVERRIDE ?? 'https://beta.dpid.org';
+    // todo: specify version here
+    const dpidPrefix = `${dpidUrl}/${dpidAlias}`;
+
+    const comments = await prisma.annotation.findMany({ where: { uuid: node.uuid, visible: false } });
+    const publishedComments = await asyncMap(comments, async (comment) => {
+      const highlights = (comment.highlights.map((h) => JSON.parse(h as string)) ?? []) as HighlightBlock[];
+
+      const transformed = await asyncMap(highlights, async (highlight) => {
+        const match = highlight.path.match(uuidPathRegex);
+        logger.info({ comment: comment.id, path: highlight.path, match: match?.groups }, 'publishDraftComments::Match');
+        if (!match?.groups?.path) return highlight;
+
+        const path = match.groups.path.startsWith('/root') ? match.groups.path.substring(1) : match.groups.path;
+        const publicPath = path.replace('root', rootCid);
+        const publishedPath = await prisma.publicDataReference.findFirst({
+          where: { userId, nodeId: node.id, path: publicPath },
+        });
+        if (!publishedPath) return highlight;
+
+        const transformedPath = `${dpidPrefix}/${path}`;
+        return { ...highlight, path: transformedPath };
+      });
+
+      logger.info({ highlights }, 'publishDraftComments::Highlights');
+      logger.info({ transformed }, 'publishDraftComments::Transformed');
+      return { id: comment.id, highlights: transformed.map((h) => JSON.stringify(h)) };
+    });
+
+    logger.info({ publishedComments }, 'publishDraftComments');
+
+    await prisma.$transaction(
+      publishedComments.map((comment) => prisma.annotation.update({ where: { id: comment.id }, data: comment })),
+    );
+  }
+
   async removeComment(commentId: number) {
     return prisma.annotation.delete({
       where: { id: commentId },

From 90af1fe881715d87867cc9c7713365c3f7a824f2 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Fri, 27 Sep 2024 18:49:48 +0200
Subject: [PATCH 47/81] fix radar query for ceramic streams

---
 desci-server/src/controllers/communities/util.ts | 8 ++++----
 desci-server/src/services/Attestation.ts         | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/desci-server/src/controllers/communities/util.ts b/desci-server/src/controllers/communities/util.ts
index 71d135df6..e57bef7bb 100644
--- a/desci-server/src/controllers/communities/util.ts
+++ b/desci-server/src/controllers/communities/util.ts
@@ -32,7 +32,7 @@ export const resolveLatestNode = async (radar: Partial<NodeRadar>) => {
   const selectAttributes: (keyof typeof discovery)[] = ['ownerId', 'NodeCover'];
   const node: Partial<Node & { versions: number }> = _.pick(discovery, selectAttributes);
   const publishedVersions =
-    (await prisma.$queryRaw`SELECT * from "NodeVersion" where "nodeId" = ${discovery.id} AND "transactionId" IS NOT NULL ORDER BY "createdAt" DESC`) as NodeVersion[];
+    (await prisma.$queryRaw`SELECT * from "NodeVersion" where "nodeId" = ${discovery.id} AND ("transactionId" IS NOT NULL or "commitId" IS NOT NULL) ORDER BY "createdAt" DESC`) as NodeVersion[];
 
   // const nodeVersions = (await getNodeVersion
   logger.info({ uuid: discovery.uuid, publishedVersions }, 'Resolve node');
@@ -61,13 +61,13 @@ export const resolveLatestNode = async (radar: Partial<NodeRadar>) => {
 };
 
 export const getNodeVersion = async (uuid: string) => {
-  let indexingResults: { researchObjects: IndexedResearchObject[]};
+  let indexingResults: { researchObjects: IndexedResearchObject[] };
   try {
     indexingResults = await getIndexedResearchObjects([uuid]);
     const researchObject = indexingResults.researchObjects[0];
     return researchObject?.versions?.length ?? 0;
   } catch (e) {
-    logger.error({ uuid, indexingResults }, "getNodeVersion failed");
+    logger.error({ uuid, indexingResults }, 'getNodeVersion failed');
     throw e;
-  };
+  }
 };
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index 8a7fbbb1a..e25bac597 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -75,7 +75,7 @@ export class AttestationService {
 
     const node = await prisma.node.findFirst({ where: { uuid: nodeUuid } });
     const publishedNodeVersions =
-      (await prisma.$queryRaw`SELECT COUNT(*) from "NodeVersion" where "nodeId" = ${node.id} AND "transactionId" IS NOT NULL`) as number;
+      (await prisma.$queryRaw`SELECT COUNT(*) from "NodeVersion" where "nodeId" = ${node.id} AND ("transactionId" IS NOT NULL or "commitId" IS NOT NULL)`) as number;
 
     if (nodeVersion >= publishedNodeVersions) {
       logger.warn({ nodeVersion, publishedNodeVersions }, 'Invalid Node version');

From 7995fc2c2101c4b90b8a226b2658654eaf2b9290 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Sat, 28 Sep 2024 04:40:40 +0200
Subject: [PATCH 48/81] update sentry tracing to log db and http reqs in sentry

---
 desci-server/package.json         |   1 +
 desci-server/prisma/schema.prisma |   3 +-
 desci-server/src/server.ts        |   3 +-
 desci-server/yarn.lock            | 157 ++++++++++++++++++++++++++++--
 4 files changed, 156 insertions(+), 8 deletions(-)

diff --git a/desci-server/package.json b/desci-server/package.json
index 739b8e4aa..470a8a218 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -71,6 +71,7 @@
     "@sendgrid/mail": "^7.7.0",
     "@sentry/cli": "^2.35.0",
     "@sentry/node": "^8.29.0",
+    "@sentry/profiling-node": "^8.32.0",
     "@sentry/tracing": "^7.12.0",
     "@types/lodash-es": "^4.17.12",
     "@types/mkdirp": "^1.0.2",
diff --git a/desci-server/prisma/schema.prisma b/desci-server/prisma/schema.prisma
index 8d18e432f..d44babc72 100755
--- a/desci-server/prisma/schema.prisma
+++ b/desci-server/prisma/schema.prisma
@@ -1,5 +1,6 @@
 generator client {
-  provider = "prisma-client-js"
+  provider        = "prisma-client-js"
+  previewFeatures = ["tracing"]
 }
 
 datasource db {
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index a84f90f26..8b0a74191 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -7,6 +7,7 @@ import type { Server as HttpServer } from 'http';
 // import path from 'path';
 
 import * as Sentry from '@sentry/node';
+import { nodeProfilingIntegration } from '@sentry/profiling-node';
 import * as Tracing from '@sentry/tracing';
 import bodyParser from 'body-parser';
 import cookieParser from 'cookie-parser';
@@ -224,7 +225,7 @@ class AppServer {
       Sentry.init({
         dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
         release: 'desci-nodes-server@' + process.env.npm_package_version,
-        integrations: [new Tracing.Integrations.Prisma({ client: prisma })],
+        integrations: [Sentry.prismaIntegration(), nodeProfilingIntegration()],
         // Set tracesSampleRate to 1.0 to capture 100%
         // of transactions for performance monitoring.
         // We recommend adjusting this value in production
diff --git a/desci-server/yarn.lock b/desci-server/yarn.lock
index fa90e947d..73dfed96f 100644
--- a/desci-server/yarn.lock
+++ b/desci-server/yarn.lock
@@ -3922,6 +3922,15 @@
     "@opentelemetry/instrumentation" "^0.40.0"
     "@opentelemetry/semantic-conventions" "^1.0.0"
 
+"@opentelemetry/instrumentation-amqplib@^0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-amqplib/-/instrumentation-amqplib-0.42.0.tgz#b3cab5a7207736a30d769962eed3af3838f986c4"
+  integrity sha512-fiuU6OKsqHJiydHWgTRQ7MnIrJ2lEqsdgFtNIH4LbAUJl/5XmrIeoDzDnox+hfkgWK65jsleFuQDtYb5hW1koQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-aws-lambda@^0.35.3":
   version "0.35.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-aws-lambda/-/instrumentation-aws-lambda-0.35.3.tgz#19c42ba680f93a595a38edb06b28bac2b7da6f92"
@@ -3979,6 +3988,13 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/connect" "3.4.35"
 
+"@opentelemetry/instrumentation-dataloader@0.12.0":
+  version "0.12.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-dataloader/-/instrumentation-dataloader-0.12.0.tgz#de03a3948dec4f15fed80aa424d6bd5d6a8d10c7"
+  integrity sha512-pnPxatoFE0OXIZDQhL2okF//dmbiWFzcSc8pUg9TqofCLYZySSxDCgQc69CJBo5JnI3Gz1KP+mOjS4WAeRIH4g==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
 "@opentelemetry/instrumentation-dataloader@^0.4.3":
   version "0.4.3"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-dataloader/-/instrumentation-dataloader-0.4.3.tgz#13d2041d44d8ff4b9ebfc48bcbf9cbda74b61d00"
@@ -4145,6 +4161,14 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/ioredis4" "npm:@types/ioredis@^4.28.10"
 
+"@opentelemetry/instrumentation-kafkajs@0.3.0":
+  version "0.3.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-kafkajs/-/instrumentation-kafkajs-0.3.0.tgz#6687bce4dac8b90ef8ccbf1b662d5d1e95a34414"
+  integrity sha512-UnkZueYK1ise8FXQeKlpBd7YYUtC7mM8J0wzUSccEfc/G8UqHQqAzIyYCUOUPUKp8GsjLnWOOK/3hJc4owb7Jg==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
 "@opentelemetry/instrumentation-knex@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-knex/-/instrumentation-knex-0.31.4.tgz#15c747acf3de94f15bbad852140ec584b79d5cd9"
@@ -4374,6 +4398,14 @@
     "@opentelemetry/semantic-conventions" "^1.0.0"
     "@types/tedious" "^4.0.6"
 
+"@opentelemetry/instrumentation-undici@0.6.0":
+  version "0.6.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-undici/-/instrumentation-undici-0.6.0.tgz#9436ee155c8dcb0b760b66947c0e0f347688a5ef"
+  integrity sha512-ABJBhm5OdhGmbh0S/fOTE4N69IZ00CsHC5ijMYfzbw3E5NwLgpQk5xsljaECrJ8wz1SfXbO03FiSuu5AyRAkvQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+
 "@opentelemetry/instrumentation-winston@^0.31.4":
   version "0.31.4"
   resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-winston/-/instrumentation-winston-0.31.4.tgz#09c160dfeb935ea6981d898176be79dea67f31c8"
@@ -4646,7 +4678,7 @@
     "@opentelemetry/core" "1.25.0"
     "@opentelemetry/semantic-conventions" "1.25.0"
 
-"@opentelemetry/resources@1.26.0", "@opentelemetry/resources@^1.25.1":
+"@opentelemetry/resources@1.26.0", "@opentelemetry/resources@^1.25.1", "@opentelemetry/resources@^1.26.0":
   version "1.26.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/resources/-/resources-1.26.0.tgz#da4c7366018bd8add1f3aa9c91c6ac59fd503cef"
   integrity sha512-CPNYchBE7MBecCSVy0HKpUISEeJOniWqcHaAHpmasZ3j9o6V3AyBzhRc90jdmemq0HOxDr6ylhUbDhBqqPpeNw==
@@ -4786,7 +4818,7 @@
     "@opentelemetry/resources" "1.8.0"
     "@opentelemetry/semantic-conventions" "1.8.0"
 
-"@opentelemetry/sdk-trace-base@^1.22", "@opentelemetry/sdk-trace-base@^1.25.1":
+"@opentelemetry/sdk-trace-base@^1.22", "@opentelemetry/sdk-trace-base@^1.25.1", "@opentelemetry/sdk-trace-base@^1.26.0":
   version "1.26.0"
   resolved "https://registry.yarnpkg.com/@opentelemetry/sdk-trace-base/-/sdk-trace-base-1.26.0.tgz#0c913bc6d2cfafd901de330e4540952269ae579c"
   integrity sha512-olWQldtvbK4v22ymrKLbIcBi9L2SpMO84sCPY54IVsJhP9fRsxJT194C/AVaAuJzLE30EdhhM1VmvVYR7az+cw==
@@ -5685,6 +5717,54 @@
     "@sentry/types" "8.29.0"
     "@sentry/utils" "8.29.0"
 
+"@sentry/core@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-8.32.0.tgz#7c4b74afa7a15bd31f5e6881aac82ccfd753e1d6"
+  integrity sha512-+xidTr0lZ0c755tq4k75dXPEb8PA+qvIefW3U9+dQMORLokBrYoKYMf5zZTG2k/OfSJS6OSxatUj36NFuCs3aA==
+  dependencies:
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+
+"@sentry/node@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.32.0.tgz#68822b3246fb2ed7418f21795ed539a18058cfa8"
+  integrity sha512-a2PoFA9j/HmJVGF/zXJhLP6QhRHGye/2EznQdHOELsH1BkeMgBaXl7D52r2E/b7qki647lXrdbspB6jid8NycA==
+  dependencies:
+    "@opentelemetry/api" "^1.9.0"
+    "@opentelemetry/context-async-hooks" "^1.25.1"
+    "@opentelemetry/core" "^1.25.1"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/instrumentation-amqplib" "^0.42.0"
+    "@opentelemetry/instrumentation-connect" "0.39.0"
+    "@opentelemetry/instrumentation-dataloader" "0.12.0"
+    "@opentelemetry/instrumentation-express" "0.42.0"
+    "@opentelemetry/instrumentation-fastify" "0.39.0"
+    "@opentelemetry/instrumentation-fs" "0.15.0"
+    "@opentelemetry/instrumentation-generic-pool" "0.39.0"
+    "@opentelemetry/instrumentation-graphql" "0.43.0"
+    "@opentelemetry/instrumentation-hapi" "0.41.0"
+    "@opentelemetry/instrumentation-http" "0.53.0"
+    "@opentelemetry/instrumentation-ioredis" "0.43.0"
+    "@opentelemetry/instrumentation-kafkajs" "0.3.0"
+    "@opentelemetry/instrumentation-koa" "0.43.0"
+    "@opentelemetry/instrumentation-mongodb" "0.47.0"
+    "@opentelemetry/instrumentation-mongoose" "0.42.0"
+    "@opentelemetry/instrumentation-mysql" "0.41.0"
+    "@opentelemetry/instrumentation-mysql2" "0.41.0"
+    "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
+    "@opentelemetry/instrumentation-pg" "0.44.0"
+    "@opentelemetry/instrumentation-redis-4" "0.42.0"
+    "@opentelemetry/instrumentation-undici" "0.6.0"
+    "@opentelemetry/resources" "^1.26.0"
+    "@opentelemetry/sdk-trace-base" "^1.26.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@prisma/instrumentation" "5.19.1"
+    "@sentry/core" "8.32.0"
+    "@sentry/opentelemetry" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+    import-in-the-middle "^1.11.0"
+
 "@sentry/node@^8.29.0":
   version "8.29.0"
   resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.29.0.tgz#6e462b8802356a630c56733dc795a4035464c4ab"
@@ -5732,6 +5812,27 @@
     "@sentry/types" "8.29.0"
     "@sentry/utils" "8.29.0"
 
+"@sentry/opentelemetry@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.32.0.tgz#4af02c17102635e4b34942d2e82d3620ddb7d95a"
+  integrity sha512-YCD8EnwJJ2ab3zWWtu5VrvHP/6Ss6GGQH0TYx2cfeGG3c0wTA/5zYx9JR4i3hUtOh1pifN34HlY0yyQHD4yctg==
+  dependencies:
+    "@sentry/core" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+
+"@sentry/profiling-node@^8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/profiling-node/-/profiling-node-8.32.0.tgz#cb4bf0512dc7a6f0a9058529f3c4dbb8963a597d"
+  integrity sha512-wKE2JAvDM3DjVNFKd2YLzwhXFS3SurLxDPpvA1EjMQ9Me7sR5ssO9jFn3e6et5oT3e3EzGDyTfbrJ81BNQuZhQ==
+  dependencies:
+    "@sentry/core" "8.32.0"
+    "@sentry/node" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+    detect-libc "^2.0.2"
+    node-abi "^3.61.0"
+
 "@sentry/tracing@^7.12.0":
   version "7.106.1"
   resolved "https://registry.yarnpkg.com/@sentry/tracing/-/tracing-7.106.1.tgz#1142fa308f7cb90f16291b969b2d5fb14c1858ae"
@@ -5749,6 +5850,11 @@
   resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.29.0.tgz#c19e43524b8e7766028f4da8f02eddcc33518541"
   integrity sha512-j4gX3ctzgD4xVWllXAhm6M+kHFEvrFoUPFq60X/pgkjsWCocGuhtNfB0rW43ICG8hCnlz8IYl7O7b8V8qY7SPg==
 
+"@sentry/types@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.32.0.tgz#dfd8aa9449a5f793b9c720888819a74a11f1790d"
+  integrity sha512-hxckvN2MzS5SgGDgVQ0/QpZXk13Vrq4BtZLwXhPhyeTmZtUiUfWvcL5TFQqLinfKdTKPe9q2MxeAJ0D4LalhMg==
+
 "@sentry/utils@7.106.1":
   version "7.106.1"
   resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-7.106.1.tgz#7761ed50d489286dd1e482570c498f675445ce82"
@@ -5763,6 +5869,13 @@
   dependencies:
     "@sentry/types" "8.29.0"
 
+"@sentry/utils@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.32.0.tgz#99a4298ee8fd7208ade470931c19d71c571dfce8"
+  integrity sha512-t1WVERhgmYURxbBj9J4/H2P2X+VKqm7B3ce9iQyrZbdf5NekhcU4jHIecPUWCPHjQkFIqkVTorqeBmDTlg/UmQ==
+  dependencies:
+    "@sentry/types" "8.32.0"
+
 "@sideway/address@^4.1.5":
   version "4.1.5"
   resolved "https://registry.yarnpkg.com/@sideway/address/-/address-4.1.5.tgz#4bc149a0076623ced99ca8208ba780d65a99b9d5"
@@ -9905,7 +10018,7 @@ detect-indent@6.1.0:
   resolved "https://registry.yarnpkg.com/detect-indent/-/detect-indent-6.1.0.tgz#592485ebbbf6b3b1ab2be175c8393d04ca0d57e6"
   integrity sha512-reYkTUJAZb9gUuZ2RvVCNhVHdg62RHnJ7WJl8ftMi4diZ6NWlciOzQN88pUhSELEwflJht4oQDv0F0BMlwaYtA==
 
-detect-libc@^2.0.0:
+detect-libc@^2.0.0, detect-libc@^2.0.2:
   version "2.0.3"
   resolved "https://registry.yarnpkg.com/detect-libc/-/detect-libc-2.0.3.tgz#f0cd503b40f9939b894697d19ad50895e30cf700"
   integrity sha512-bwy0MGW55bG41VqxxypOsdSdGqLwXPI/focwgTYCFMbdUiBAxLg9CFzG08sz2aqzknwiX7Hkl0bQENjg8iLByw==
@@ -13929,6 +14042,13 @@ node-abi@^3.3.0:
   dependencies:
     semver "^7.3.5"
 
+node-abi@^3.61.0:
+  version "3.68.0"
+  resolved "https://registry.yarnpkg.com/node-abi/-/node-abi-3.68.0.tgz#8f37fb02ecf4f43ebe694090dcb52e0c4cc4ba25"
+  integrity sha512-7vbj10trelExNjFSBm5kTvZXXa7pZyKWx9RCKIyqe6I9Ev3IzGpQoqBP3a+cOdxY+pWj6VkP28n/2wWysBHD/A==
+  dependencies:
+    semver "^7.3.5"
+
 node-addon-api@^2.0.0:
   version "2.0.2"
   resolved "https://registry.yarnpkg.com/node-addon-api/-/node-addon-api-2.0.2.tgz#432cfa82962ce494b132e9d72a15b29f71ff5d32"
@@ -16207,7 +16327,16 @@ string-template@~0.2.1:
   resolved "https://registry.yarnpkg.com/string-template/-/string-template-0.2.1.tgz#42932e598a352d01fc22ec3367d9d84eec6c9add"
   integrity sha512-Yptehjogou2xm4UJbxJ4CxgZx12HBfeystp0y3x7s4Dj32ltVVG1Gg8YhKjHZkHicuKpZX/ffilA8505VbUbpw==
 
-"string-width-cjs@npm:string-width@^4.2.0", "string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
+"string-width-cjs@npm:string-width@^4.2.0":
+  version "4.2.3"
+  resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
+  integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
+  dependencies:
+    emoji-regex "^8.0.0"
+    is-fullwidth-code-point "^3.0.0"
+    strip-ansi "^6.0.1"
+
+"string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
   version "4.2.3"
   resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
   integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
@@ -16280,7 +16409,7 @@ stringify-object@3.3.0:
     is-obj "^1.0.1"
     is-regexp "^1.0.0"
 
-"strip-ansi-cjs@npm:strip-ansi@^6.0.1", strip-ansi@^6.0.0, strip-ansi@^6.0.1:
+"strip-ansi-cjs@npm:strip-ansi@^6.0.1":
   version "6.0.1"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
   integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
@@ -16294,6 +16423,13 @@ strip-ansi@^3.0.0:
   dependencies:
     ansi-regex "^2.0.0"
 
+strip-ansi@^6.0.0, strip-ansi@^6.0.1:
+  version "6.0.1"
+  resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
+  integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
+  dependencies:
+    ansi-regex "^5.0.1"
+
 strip-ansi@^7.0.1:
   version "7.1.0"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-7.1.0.tgz#d5b6568ca689d8561370b0707685d22434faff45"
@@ -17329,7 +17465,7 @@ workerpool@6.2.1:
   resolved "https://registry.yarnpkg.com/workerpool/-/workerpool-6.2.1.tgz#46fc150c17d826b86a008e5a4508656777e9c343"
   integrity sha512-ILEIE97kDZvF9Wb9f6h5aXK4swSlKGUcOEGiIYb2OOu/IrDU9iwj0fD//SsA6E5ibwJxpEvhullJY4Sl4GcpAw==
 
-"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
+"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0":
   version "7.0.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
   integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
@@ -17347,6 +17483,15 @@ wrap-ansi@^6.2.0:
     string-width "^4.1.0"
     strip-ansi "^6.0.0"
 
+wrap-ansi@^7.0.0:
+  version "7.0.0"
+  resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
+  integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
+  dependencies:
+    ansi-styles "^4.0.0"
+    string-width "^4.1.0"
+    strip-ansi "^6.0.0"
+
 wrap-ansi@^8.1.0:
   version "8.1.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-8.1.0.tgz#56dc22368ee570face1b49819975d9b9a5ead214"

From 32044b52a2a6ed9d5700ddcb94db27a14bec6b75 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 30 Sep 2024 13:09:56 +0200
Subject: [PATCH 49/81] apply profile sample rate

---
 desci-server/src/server.ts | 1 +
 1 file changed, 1 insertion(+)

diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 8b0a74191..172964d54 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -230,6 +230,7 @@ class AppServer {
         // of transactions for performance monitoring.
         // We recommend adjusting this value in production
         tracesSampleRate: 1.0,
+        profilesSampleRate: 1.0,
       });
       Sentry.setupExpressErrorHandler(this.app);
     } else {

From b4dd7f297df1ef8a698235cc4caa81c33ecd8d34 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Mon, 30 Sep 2024 17:45:17 +0200
Subject: [PATCH 50/81] builds: enable using fnm instead of nvm

---
 dockerDev.sh | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/dockerDev.sh b/dockerDev.sh
index b4e2d0940..bf2a5f539 100755
--- a/dockerDev.sh
+++ b/dockerDev.sh
@@ -18,7 +18,7 @@ assert_command_available() {
 }
 
 init_node() {
-  if ! printenv NVM_DIR &> /dev/null; then
+  if ! printenv NVM_DIR &> /dev/null && ! command -v fnm; then
     echo "[dockerDev] NVM_DIR not set, please install NVM"
     echo "[dockerDev] curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.3/install.sh | bash"
     exit 1
@@ -27,13 +27,17 @@ init_node() {
   # Since nvm is loaded through shell config, it's not available
   # in scripts unless we source it manually
   local NVM_SCRIPT="$NVM_DIR/nvm.sh"
-  if [[ -s "$NVM_SCRIPT" ]]; then
+  if command -v fnm &>/dev/null; then
+    # A script doesn't inherit get aliases, so if fnm is available, "implement" nvm with that
+    nvm() { fnm "$@"; }
+  elif [[ -s "$NVM_SCRIPT" ]]; then
     source "$NVM_SCRIPT"
   else
     echo "[dockerDev] Could not find $NVM_SCRIPT, aborting"
     exit 1
   fi
-  nvm install $(cat .nvmrc)
+
+  nvm install "$(cat .nvmrc)"
   nvm use
 }
 

From a61eb0bfa1183bbd894bb06ac0e6111e4c72ea0f Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Mon, 30 Sep 2024 17:45:46 +0200
Subject: [PATCH 51/81] server: dedupe dev subgraph versions

---
 .env.example                         |  8 +++---
 desci-server/src/config/index.ts     |  1 +
 desci-server/src/services/fixDpid.ts |  2 +-
 desci-server/src/theGraph.ts         | 42 ++++++++++++++++++----------
 docker-compose.dev.yml               |  2 +-
 5 files changed, 34 insertions(+), 21 deletions(-)

diff --git a/.env.example b/.env.example
index b34c27606..a47adff3b 100755
--- a/.env.example
+++ b/.env.example
@@ -119,7 +119,10 @@ ETHEREUM_RPC_URL=http://host.docker.internal:8545
 # Use this for Sepolia testnet
 # ETHEREUM_RPC_URL=https://eth-sepolia.g.alchemy.com/v2/demo
 
-DPID_URL_OVERRIDE=https://dev-beta.dpid.org
+# Use resolver in compose cluster locally
+DPID_URL_OVERRIDE=http://host.docker.internal:5460
+# Use public dev resolver
+# DPID_URL_OVERRIDE=https://dev-beta.dpid.org
 
 # Set to true if you want to mute the publish worker in local dev
 MUTE_PUBLISH_WORKER=false
@@ -139,8 +142,6 @@ CROSSREF_PASSWORD=
 # Cross ref notification callback envs
 CROSSREF_NOTIFY_ENDPOINT=endpoint
 
-# automated metadata
-
 # Automated metadata
 AUTOMATED_METADATA_API=http://host.docker.internal:5005
 AUTOMATED_METADATA_API_KEY=
@@ -158,6 +159,5 @@ ES_DB_NAME=
 ES_DB_USER=
 ES_DB_PASSWORD=
 
-
 ### open Alex Database - Postgres 
 OPEN_ALEX_DATABASE_URL=postgresql://username:password@host/database?schema=openalex
diff --git a/desci-server/src/config/index.ts b/desci-server/src/config/index.ts
index 4d77a161a..22fd98a9e 100644
--- a/desci-server/src/config/index.ts
+++ b/desci-server/src/config/index.ts
@@ -11,6 +11,7 @@ export const PUBLIC_IPFS_PATH =
 export const MEDIA_SERVER_API_URL = process.env.NODES_MEDIA_SERVER_URL;
 export const MEDIA_SERVER_API_KEY = process.env.MEDIA_SECRET_KEY;
 export const SERVER_URL = process.env.SERVER_URL;
+export const THEGRAPH_API_URL = process.env.THEGRAPH_API_URL;
 
 const CERAMIC_API_URLS = {
   local: 'http://host.docker.internal:7007',
diff --git a/desci-server/src/services/fixDpid.ts b/desci-server/src/services/fixDpid.ts
index 4de297940..389fec225 100644
--- a/desci-server/src/services/fixDpid.ts
+++ b/desci-server/src/services/fixDpid.ts
@@ -22,7 +22,7 @@ export const getTargetDpidUrl = () => {
     'https://nodes-api.desci.com': 'https://beta.dpid.org',
   };
   const targetDpidUrl = TARGET_DPID_URL_BY_SERVER_URL[process.env.SERVER_URL];
-  return targetDpidUrl;
+  return targetDpidUrl as string;
 };
 
 // usage: npx tsx scripts/fix-dpid.ts 211
diff --git a/desci-server/src/theGraph.ts b/desci-server/src/theGraph.ts
index 709b3b36e..8da267532 100644
--- a/desci-server/src/theGraph.ts
+++ b/desci-server/src/theGraph.ts
@@ -5,6 +5,7 @@ import { logger as parentLogger } from './logger.js';
 import { getCommitTimestamps } from './services/ceramic.js';
 import { getTargetDpidUrl } from './services/fixDpid.js';
 import { convertCidTo0xHex, decodeBase64UrlSafeToHex, ensureUuidEndsWithDot } from './utils.js';
+import { THEGRAPH_API_URL } from './config/index.js';
 
 const logger = parentLogger.child({
   module: 'GetIndexedResearchObjects',
@@ -100,24 +101,14 @@ export const getIndexedResearchObjects = async (
     }
   }
 
-  /**
-   * fallback to _getIndexedResearchObjects() when resolving locally
-   * because calls to getHistoryFromStreams() never returns due to
-   * RESOLVER_URL not configured for local dpid resolution
-   */
-  if (process.env.NODE_ENV === 'dev') {
-    legacyUuids.push(...paddedUuids);
-    streamLookupMap = {};
-  }
-
-  let streamHistory = [];
+  let streamHistory: IndexedResearchObject[] = [];
   if (Object.keys(streamLookupMap).length > 0) {
     logger.info({ streamLookupMap }, 'Querying resolver for history');
     streamHistory = await getHistoryFromStreams(streamLookupMap);
     logger.info({ streamHistory }, 'Resolver history for nodes found');
   }
 
-  let legacyHistory = [];
+  let legacyHistory: IndexedResearchObject[] = [];
   if (legacyUuids.length > 0) {
     logger.info({ legacyUuids, _urlSafeBase64s }, 'Falling back to subgraph query for history');
     legacyHistory = (await _getIndexedResearchObjects(legacyUuids)).researchObjects;
@@ -202,9 +193,29 @@ export const _getIndexedResearchObjects = async (
       }
     }
   }`;
-  return query(q);
+
+  const results = await query<{ researchObjects: IndexedResearchObject[] }>(q);
+  if (THEGRAPH_API_URL.includes("sepolia-dev")) {
+    // In-place deduplication on the graph results
+    results.researchObjects.forEach(ro => {
+      ro.versions = ro.versions.reduce((deduped, next) => {
+        if (deduped.length === 0 || !isLegacyDupe(next, deduped.at(-1))) {
+          deduped.push(next);
+        }
+        return deduped;
+      }, [] as IndexedResearchObjectVersion[])
+    });
+  }
+
+  return results;
 };
 
+/** Makes semi-certain that two entries are dupes, by requiring that
+* both timestamp and cid are equal
+*/
+const isLegacyDupe = (a: IndexedResearchObjectVersion, b: IndexedResearchObjectVersion) =>
+    a.cid === b.cid && a.time === b.time;
+
 /**
  * For a bunch of publish hashes, get the corresponding timestamps as strings.
  */
@@ -288,7 +299,7 @@ export const _getDpidForTxIds = async (txs: string[]): Promise<RegisterEvent[]>
     }
   }`;
   console.log('Sending graph query:', { q });
-  const url = process.env.THEGRAPH_API_URL.replace('name/nodes', 'name/dpid-registry');
+  const url = THEGRAPH_API_URL.replace('name/nodes', 'name/dpid-registry');
   const response = await query<DpidRegistersResponse>(q, url);
   return response.registers;
 };
@@ -297,7 +308,7 @@ export const query = async <T>(query: string, overrideUrl?: string): Promise<T>
   const payload = JSON.stringify({
     query,
   });
-  const url = overrideUrl ?? process.env.THEGRAPH_API_URL;
+  const url = overrideUrl ?? THEGRAPH_API_URL;
   const { data } = await axios.post(url, payload);
   if (data.errors) {
     logger.error({ fn: 'query', err: data.errors, query, dataRes: data }, `graph index query err ${query}`);
@@ -305,3 +316,4 @@ export const query = async <T>(query: string, overrideUrl?: string): Promise<T>
   }
   return data.data as T;
 };
+
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index 6302874a1..d9c14aea0 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -232,7 +232,7 @@ services:
       - JAVA_OPTS=-Xmx2G -Xms2G
 
   dpid_resolver:
-    image: descilabs/dpid-resolver
+    image: descilabs/dpid-resolver:develop
     container_name: dpid_resolver
     # Uncomment and set to local repo path for tinkering
     # build:

From 2d8146a92c3e25d540289f9566c9156b3c922058 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 30 Sep 2024 21:23:56 +0200
Subject: [PATCH 52/81] fix build

---
 .github/workflows/build-server.yaml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/.github/workflows/build-server.yaml b/.github/workflows/build-server.yaml
index b25936ff2..e25841008 100644
--- a/.github/workflows/build-server.yaml
+++ b/.github/workflows/build-server.yaml
@@ -60,7 +60,11 @@ jobs:
 
       - name: Set up Sentry CLI
         run: |
+          npm install -g @sentry/cli
           sentry-cli --version
+          sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
+          # append to .env
+          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> desci-server/.env
 
       - name: Run tests
         run: |

From 6ac88929ffa48a267ec17fa7e5791ddfd3894f75 Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Mon, 30 Sep 2024 21:25:34 +0200
Subject: [PATCH 53/81] fix build2

---
 .github/workflows/build-server.yaml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/build-server.yaml b/.github/workflows/build-server.yaml
index e25841008..8d2ea2a31 100644
--- a/.github/workflows/build-server.yaml
+++ b/.github/workflows/build-server.yaml
@@ -124,8 +124,11 @@ jobs:
 
       - name: Set up Sentry CLI
         run: |
+          npm install -g @sentry/cli
           sentry-cli --version
           sentry-cli login --auth-token $SENTRY_AUTH_TOKEN
+          # append to .env
+          echo -e "\nSENTRY_AUTH_TOKEN=$SENTRY_AUTH" >> desci-server/.env
 
       - name: Build and tag the image (DEV)
         if: github.ref == 'refs/heads/develop'

From e319abed8f357ae112f19a15d8e5141deda6efad Mon Sep 17 00:00:00 2001
From: Sina Iman <sina.iman@gmail.com>
Date: Tue, 1 Oct 2024 00:08:34 +0200
Subject: [PATCH 54/81] fix casing bug in email auth

---
 desci-server/src/controllers/auth/magic.ts | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/desci-server/src/controllers/auth/magic.ts b/desci-server/src/controllers/auth/magic.ts
index 422a34914..94be7f10c 100644
--- a/desci-server/src/controllers/auth/magic.ts
+++ b/desci-server/src/controllers/auth/magic.ts
@@ -27,6 +27,7 @@ export const magic = async (req: Request, res: Response, next: NextFunction) =>
   }
 
   const { email, code, dev, orcid, access_token, refresh_token, expires_in } = req.body;
+  const cleanEmail = email.toLowerCase().trim();
 
   if (!code) {
     // we are sending the magic code
@@ -34,7 +35,7 @@ export const magic = async (req: Request, res: Response, next: NextFunction) =>
     let user = await prismaClient.user.findFirst({
       where: {
         email: {
-          equals: email,
+          equals: cleanEmail,
           mode: 'insensitive',
         },
       },
@@ -44,13 +45,13 @@ export const magic = async (req: Request, res: Response, next: NextFunction) =>
     if (!user) {
       user = await prismaClient.user.upsert({
         where: {
-          email,
+          email: cleanEmail,
         },
         create: {
-          email,
+          email: cleanEmail,
         },
         update: {
-          email,
+          email: cleanEmail,
         },
       });
 
@@ -66,7 +67,7 @@ export const magic = async (req: Request, res: Response, next: NextFunction) =>
 
     try {
       const ip = req.ip;
-      const ok = await sendMagicLink(email, ip);
+      const ok = await sendMagicLink(cleanEmail, ip);
       res.send({ ok });
     } catch (err) {
       logger.error({ ...err, fn: 'magic' });
@@ -75,7 +76,7 @@ export const magic = async (req: Request, res: Response, next: NextFunction) =>
   } else {
     // we are validating the magic code is correct
     try {
-      const user = await magicLinkRedeem(email, code);
+      const user = await magicLinkRedeem(cleanEmail, code);
 
       if (orcid && user) {
         logger.trace({ fn: 'magic', orcid }, `setting orcid for user`);

From e99aaf29ef0efa9086b16485dca3b598db7aed72 Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Tue, 1 Oct 2024 11:06:26 +0200
Subject: [PATCH 55/81] compose: fix redis url protocol

---
 docker-compose.dev.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index d9c14aea0..a00e563b2 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -242,7 +242,7 @@ services:
       OPTIMISM_RPC_URL: http://host.docker.internal:8545
       CERAMIC_URL: http://host.docker.internal:7007
       IPFS_GATEWAY: http://host.docker.internal:8089/ipfs
-      REDIS_HOST: http://host.docker.internal
+      REDIS_HOST: host.docker.internal
       REDIS_PORT: 6379
       # How long to store anchored commit info (default 24 hours)
       CACHE_TTL_ANCHORED: 86400

From 845b168fa953c534bfd19975f3aad6d872c8ed13 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Tue, 1 Oct 2024 10:56:02 +0000
Subject: [PATCH 56/81] slight optim for phrase matches

---
 desci-server/src/services/ElasticSearchService.ts | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 9a9a84383..ed57ffd54 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -123,6 +123,11 @@ export function createFunctionScoreQuery(query: QueryDslQueryContainer, entity:
               type: 'article',
             } as QueryDslTermsQuery,
           },
+          {
+            term: {
+              type: 'preprint',
+            } as QueryDslTermsQuery,
+          },
         ],
       } as QueryDslBoolQuery,
     };
@@ -339,7 +344,9 @@ export function buildMultiMatchQuery(
           multi_match: {
             query: query,
             fields: fields,
-            type: 'best_fields',
+            type: 'phrase',
+            slop: 5,
+            tie_breaker: 0.7,
             // fuzziness: fuzzy, // Retained fuzziness
           },
         },

From 299233a5c2cb547769d4726e99ab46546f1f9866 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Tue, 1 Oct 2024 20:32:45 +0000
Subject: [PATCH 57/81] rework querying, fix citation score boost drowning out
 0 citation articles with strong query matches

---
 .../src/services/ElasticSearchService.ts      | 88 +++++++++++++------
 1 file changed, 63 insertions(+), 25 deletions(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index ed57ffd54..6059394ad 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -95,11 +95,11 @@ export function createFunctionScoreQuery(query: QueryDslQueryContainer, entity:
   // Simplified function score containers
   const functions: QueryDslFunctionScoreContainer[] = [
     {
+      filter: { range: { cited_by_count: { gte: 1 } } },
       field_value_factor: {
         field: 'cited_by_count',
-        factor: 1.5,
+        factor: 0.025,
         modifier: 'log1p',
-        missing: 0,
       },
     },
     {
@@ -332,42 +332,80 @@ export function buildMultiMatchQuery(
   fuzzy: string | number = 0,
 ): QueryDslQueryContainer {
   const fields = getRelevantFields(entity);
+  const terms = query.split(/\s+/);
+  const termCount = terms.length;
 
-  let multiMatchQuery: QueryDslQueryContainer;
+  const exactMatchBoost = 1000;
+  const phraseMatchBoost = 100;
+  const termMatchBoost = 10;
 
-  if (entity.startsWith('works_') && !fields[0]?.includes('institutions')) {
-    const nestedField = fields[0]?.split('.')[0];
-    multiMatchQuery = {
-      nested: {
-        path: nestedField,
-        query: {
-          multi_match: {
-            query: query,
-            fields: fields,
-            type: 'phrase',
-            slop: 5,
-            tie_breaker: 0.7,
-            // fuzziness: fuzzy, // Retained fuzziness
-          },
-        },
+  let shouldClauses: QueryDslQueryContainer[] = [
+    // Phrase match (high priority)
+    {
+      multi_match: {
+        query: query,
+        fields: fields.map((field) => `${field}^${phraseMatchBoost}`),
+        type: 'phrase' as QueryDslTextQueryType,
+        slop: 1,
+        boost: phraseMatchBoost,
       },
-    };
-  } else {
-    multiMatchQuery = {
+    },
+    // Phrase prefix match (medium-high priority)
+    {
       multi_match: {
         query: query,
-        fields: fields,
-        type: 'best_fields',
-        // fuzziness: fuzzy, // Retained fuzziness
+        fields: fields.map((field) => `${field}^${termMatchBoost * 2}`),
+        type: 'phrase_prefix' as QueryDslTextQueryType,
+        boost: termMatchBoost * 2,
       },
-    };
+    },
+    // Term match with minimum should match (medium priority)
+    {
+      bool: {
+        should: fields.map((field) => ({
+          match: {
+            [field]: {
+              query: query,
+              operator: 'or',
+              minimum_should_match: Math.min(3, Math.ceil(termCount * 0.75)),
+              boost: termMatchBoost,
+            },
+          },
+        })),
+        minimum_should_match: 1,
+      },
+    },
+  ];
+
+  // Special handling for 'works' and 'works_single' entities
+  if (entity === 'works' || entity === 'works_single') {
+    shouldClauses = [
+      {
+        match_phrase: {
+          title: {
+            query: query,
+            boost: exactMatchBoost * 2, // Double boost for title exact match
+            slop: 0,
+          },
+        },
+      },
+      ...shouldClauses,
+    ];
   }
 
+  const multiMatchQuery: QueryDslQueryContainer = {
+    bool: {
+      should: shouldClauses,
+      minimum_should_match: 1,
+    },
+  };
+
   if (entity === 'works' || entity === 'works_single') {
     return {
       function_score: createFunctionScoreQuery(multiMatchQuery, entity),
     };
   }
+
   return multiMatchQuery;
 }
 

From 032f90ea6f51cbce7efce8fa0cf781fe681c1d8e Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 1 Oct 2024 18:42:13 -0500
Subject: [PATCH 58/81] update visibility of private comments on publish

---
 desci-server/src/controllers/communities/util.ts |  6 +++---
 desci-server/src/services/Attestation.ts         | 10 ++++++++--
 desci-server/src/theGraph.ts                     | 12 +-----------
 docker-compose.dev.yml                           |  6 +++---
 4 files changed, 15 insertions(+), 19 deletions(-)

diff --git a/desci-server/src/controllers/communities/util.ts b/desci-server/src/controllers/communities/util.ts
index 71d135df6..170ad2bc7 100644
--- a/desci-server/src/controllers/communities/util.ts
+++ b/desci-server/src/controllers/communities/util.ts
@@ -61,13 +61,13 @@ export const resolveLatestNode = async (radar: Partial<NodeRadar>) => {
 };
 
 export const getNodeVersion = async (uuid: string) => {
-  let indexingResults: { researchObjects: IndexedResearchObject[]};
+  let indexingResults: { researchObjects: IndexedResearchObject[] };
   try {
     indexingResults = await getIndexedResearchObjects([uuid]);
     const researchObject = indexingResults.researchObjects[0];
     return researchObject?.versions?.length ?? 0;
   } catch (e) {
-    logger.error({ uuid, indexingResults }, "getNodeVersion failed");
+    logger.error({ uuid, indexingResults }, 'getNodeVersion failed');
     throw e;
-  };
+  }
 };
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index 880de3d9b..f7002350f 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -704,13 +704,19 @@ export class AttestationService {
 
       logger.info({ highlights }, 'publishDraftComments::Highlights');
       logger.info({ transformed }, 'publishDraftComments::Transformed');
-      return { id: comment.id, highlights: transformed.map((h) => JSON.stringify(h)) };
+      return {
+        id: comment.id,
+        highlights: transformed.map((h) => JSON.stringify(h)),
+        visible: true,
+      } as Prisma.AnnotationUncheckedUpdateManyInput;
     });
 
     logger.info({ publishedComments }, 'publishDraftComments');
 
     await prisma.$transaction(
-      publishedComments.map((comment) => prisma.annotation.update({ where: { id: comment.id }, data: comment })),
+      publishedComments.map((comment) =>
+        prisma.annotation.update({ where: { id: comment.id as number }, data: comment }),
+      ),
     );
   }
 
diff --git a/desci-server/src/theGraph.ts b/desci-server/src/theGraph.ts
index 15e602afa..6fef11a88 100644
--- a/desci-server/src/theGraph.ts
+++ b/desci-server/src/theGraph.ts
@@ -77,7 +77,7 @@ export const getIndexedResearchObjects = async (
   For stream resolution, build a map to allow for also returning the UUID
   to match the format returned by the graph lookup
   */
-  let streamLookupMap: Record<string, string> = {};
+  const streamLookupMap: Record<string, string> = {};
   /** For legacy nodes, the graph lookup only needs the UUID */
   const legacyUuids = [];
 
@@ -100,16 +100,6 @@ export const getIndexedResearchObjects = async (
     }
   }
 
-  /**
-   * fallback to _getIndexedResearchObjects() when resolving locally
-   * because calls to getHistoryFromStreams() never returns due to
-   * RESOLVER_URL not configured for local dpid resolution
-   */
-  if (process.env.NODE_ENV === 'dev') {
-    legacyUuids.push(...paddedUuids);
-    streamLookupMap = {};
-  }
-
   let streamHistory = [];
   if (Object.keys(streamLookupMap).length > 0) {
     logger.info({ streamLookupMap }, 'Querying resolver for history');
diff --git a/docker-compose.dev.yml b/docker-compose.dev.yml
index faba1ceca..6c2504336 100755
--- a/docker-compose.dev.yml
+++ b/docker-compose.dev.yml
@@ -231,17 +231,17 @@ services:
       - JAVA_OPTS=-Xmx2G -Xms2G
 
   dpid_resolver:
-    image: descilabs/dpid-resolver
+    image: descilabs/dpid-resolver:develop
     container_name: dpid_resolver
     # Uncomment and set to local repo path for tinkering
     # build:
-      # context: ~/dev/desci/dpid-resolver
+    #   context: ~/dev/desci/dpid-resolver
     environment:
       DPID_ENV: local
       OPTIMISM_RPC_URL: http://host.docker.internal:8545
       CERAMIC_URL: http://host.docker.internal:7007
       IPFS_GATEWAY: http://host.docker.internal:8089/ipfs
-      REDIS_HOST: http://host.docker.internal
+      REDIS_HOST: host.docker.internal
       REDIS_PORT: 6379
       # How long to store anchored commit info (default 24 hours)
       CACHE_TTL_ANCHORED: 86400

From 28e17c18a191b99dcdf6be03063ec22f0da34f23 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Wed, 2 Oct 2024 11:16:26 +0000
Subject: [PATCH 59/81] change score function to sum mode, lower term match
 boost

---
 .../src/services/ElasticSearchService.ts      | 63 +++++++------------
 1 file changed, 23 insertions(+), 40 deletions(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 6059394ad..558c1e53f 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -92,16 +92,18 @@ const sortConfigs: { [entity: string]: { [sortType: string]: (order: SortOrder)
 export function createFunctionScoreQuery(query: QueryDslQueryContainer, entity: string): QueryDslFunctionScoreQuery {
   const currentYear = new Date().getFullYear();
 
-  // Simplified function score containers
   const functions: QueryDslFunctionScoreContainer[] = [
+    // Citation count
     {
       filter: { range: { cited_by_count: { gte: 1 } } },
       field_value_factor: {
         field: 'cited_by_count',
-        factor: 0.025,
+        factor: 0.01,
         modifier: 'log1p',
       },
+      weight: 5,
     },
+    // Publication year
     {
       linear: {
         publication_year: {
@@ -111,54 +113,35 @@ export function createFunctionScoreQuery(query: QueryDslQueryContainer, entity:
           decay: 0.7,
         },
       },
+      weight: 3,
     },
   ];
 
   if (entity === 'works' || entity === 'works_single') {
-    const nonArticleFilter: QueryDslQueryContainer = {
-      bool: {
-        must_not: [
-          {
-            term: {
-              type: 'article',
-            } as QueryDslTermsQuery,
-          },
-          {
-            term: {
-              type: 'preprint',
-            } as QueryDslTermsQuery,
-          },
-        ],
-      } as QueryDslBoolQuery,
-    };
-
-    const nonEnglishFilter: QueryDslQueryContainer = {
-      bool: {
-        must_not: [
-          {
-            term: {
-              language: 'en',
-            } as QueryDslTermsQuery,
-          },
-        ],
-      } as QueryDslBoolQuery,
-    };
-
+    // Boost for articles and preprints
     functions.push({
-      weight: 0.5,
-      filter: nonArticleFilter,
+      weight: 1,
+      filter: {
+        bool: {
+          should: [{ term: { type: 'article' } }, { term: { type: 'preprint' } }] as QueryDslQueryContainer[],
+        } as QueryDslBoolQuery,
+      },
     });
+
+    // Boost for English language documents
     functions.push({
-      weight: 0.1,
-      filter: nonEnglishFilter,
+      weight: 0.5,
+      filter: {
+        term: { language: 'en' },
+      },
     });
   }
 
   return {
     query,
     functions,
-    boost_mode: 'multiply' as QueryDslFunctionBoostMode,
-    score_mode: 'multiply' as QueryDslFunctionScoreMode,
+    boost_mode: 'sum' as QueryDslFunctionBoostMode,
+    score_mode: 'sum' as QueryDslFunctionScoreMode,
   };
 }
 
@@ -337,7 +320,7 @@ export function buildMultiMatchQuery(
 
   const exactMatchBoost = 1000;
   const phraseMatchBoost = 100;
-  const termMatchBoost = 10;
+  const termMatchBoost = 5;
 
   let shouldClauses: QueryDslQueryContainer[] = [
     // Phrase match (high priority)
@@ -359,7 +342,7 @@ export function buildMultiMatchQuery(
         boost: termMatchBoost * 2,
       },
     },
-    // Term match with minimum should match (medium priority)
+    // Term match with minimum should match term threshold (medium priority)
     {
       bool: {
         should: fields.map((field) => ({
@@ -367,7 +350,7 @@ export function buildMultiMatchQuery(
             [field]: {
               query: query,
               operator: 'or',
-              minimum_should_match: Math.min(3, Math.ceil(termCount * 0.75)),
+              minimum_should_match: Math.min(3, Math.ceil(termCount * 0.7)),
               boost: termMatchBoost,
             },
           },

From 349aa1be368aaa416f5de0b04a1fe35ba215e33f Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Wed, 2 Oct 2024 11:37:30 +0000
Subject: [PATCH 60/81] fix querying other indexes besides works (for single
 entity autocompletion)

---
 .../src/services/ElasticSearchService.ts      | 87 +++++++++----------
 1 file changed, 43 insertions(+), 44 deletions(-)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 558c1e53f..435459d93 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -30,7 +30,7 @@ export const VALID_ENTITIES = [
  */
 export const RELEVANT_FIELDS = {
   works: ['title', 'abstract'],
-  authors: ['display_name', 'orcid', 'last_known_institution', 'authors.affiliation'],
+  authors: ['display_name', 'orcid', 'last_known_institution'],
   topics: ['display_name'],
   fields: ['subfield_display_name'],
   concepts: ['display_name'],
@@ -322,58 +322,57 @@ export function buildMultiMatchQuery(
   const phraseMatchBoost = 100;
   const termMatchBoost = 5;
 
-  let shouldClauses: QueryDslQueryContainer[] = [
-    // Phrase match (high priority)
-    {
-      multi_match: {
-        query: query,
-        fields: fields.map((field) => `${field}^${phraseMatchBoost}`),
-        type: 'phrase' as QueryDslTextQueryType,
-        slop: 1,
-        boost: phraseMatchBoost,
-      },
+  const shouldClauses: QueryDslQueryContainer[] = [];
+
+  // Exact match on keyword fields
+  shouldClauses.push({
+    multi_match: {
+      query: query,
+      fields: fields.map((field) => `${field}.keyword^${exactMatchBoost}`),
+      type: 'best_fields' as QueryDslTextQueryType,
+      boost: exactMatchBoost,
     },
-    // Phrase prefix match (medium-high priority)
-    {
-      multi_match: {
-        query: query,
-        fields: fields.map((field) => `${field}^${termMatchBoost * 2}`),
-        type: 'phrase_prefix' as QueryDslTextQueryType,
-        boost: termMatchBoost * 2,
-      },
+  });
+
+  // Phrase match on text fields
+  shouldClauses.push({
+    multi_match: {
+      query: query,
+      fields: fields.map((field) => `${field}^${phraseMatchBoost}`),
+      type: 'phrase' as QueryDslTextQueryType,
+      slop: 1,
+      boost: phraseMatchBoost,
     },
-    // Term match with minimum should match term threshold (medium priority)
-    {
-      bool: {
-        should: fields.map((field) => ({
-          match: {
-            [field]: {
-              query: query,
-              operator: 'or',
-              minimum_should_match: Math.min(3, Math.ceil(termCount * 0.7)),
-              boost: termMatchBoost,
-            },
+  });
+
+  // Term match with minimum should match
+  shouldClauses.push({
+    bool: {
+      should: fields.map((field) => ({
+        match: {
+          [field]: {
+            query: query,
+            operator: 'or',
+            minimum_should_match: Math.min(3, Math.ceil(termCount * 0.7)),
+            boost: termMatchBoost,
           },
-        })),
-        minimum_should_match: 1,
-      },
+        },
+      })),
+      minimum_should_match: 1,
     },
-  ];
+  });
 
   // Special handling for 'works' and 'works_single' entities
   if (entity === 'works' || entity === 'works_single') {
-    shouldClauses = [
-      {
-        match_phrase: {
-          title: {
-            query: query,
-            boost: exactMatchBoost * 2, // Double boost for title exact match
-            slop: 0,
-          },
+    shouldClauses.unshift({
+      match_phrase: {
+        title: {
+          query: query,
+          boost: exactMatchBoost * 2, // Double boost for title exact match
+          slop: 0,
         },
       },
-      ...shouldClauses,
-    ];
+    });
   }
 
   const multiMatchQuery: QueryDslQueryContainer = {

From 021b29fbfa014f137d207415815033d1a64b3b89 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Wed, 2 Oct 2024 06:37:41 -0500
Subject: [PATCH 61/81] add node version to dpid prefix in comment publish

---
 desci-server/src/controllers/nodes/publish.ts | 11 +++++++----
 desci-server/src/services/Attestation.ts      |  6 ++----
 desci-server/src/services/fixDpid.ts          |  1 +
 desci-server/src/theGraph.ts                  |  2 +-
 4 files changed, 11 insertions(+), 9 deletions(-)

diff --git a/desci-server/src/controllers/nodes/publish.ts b/desci-server/src/controllers/nodes/publish.ts
index a63b08815..382d38c92 100644
--- a/desci-server/src/controllers/nodes/publish.ts
+++ b/desci-server/src/controllers/nodes/publish.ts
@@ -16,6 +16,7 @@ import {
   setDpidAlias,
 } from '../../services/nodeManager.js';
 import { publishServices } from '../../services/PublishServices.js';
+import { getIndexedResearchObjects } from '../../theGraph.js';
 import { discordNotify } from '../../utils/discordUtils.js';
 import { ensureUuidEndsWithDot } from '../../utils.js';
 
@@ -70,7 +71,6 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
     body: req.body,
     uuid,
     cid,
-    manifest,
     transactionId,
     ceramicStream,
     commitId,
@@ -165,15 +165,18 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
       where: { nodeId: node.id, root: true, userId: owner.id },
       orderBy: { updatedAt: 'desc' },
     });
-    logger.info({ root }, 'publishDraftComments::Root');
+    const result = await getIndexedResearchObjects([ensureUuidEndsWithDot(uuid)]);
+    // if node is being published for the first time default to 1
+    const version = result ? result.researchObjects?.[0]?.versions.length : 1;
+    logger.info({ root, result, version }, 'publishDraftComments::Root');
+
     // publish draft comments
     await attestationService.publishDraftComments({
       node,
       userId: owner.id,
       dpidAlias: dpidAlias ?? parseInt(manifest.dpid?.id),
       rootCid: root.rootCid,
-      // todo: get version number
-      version: 0,
+      version,
     });
 
     return res.send({
diff --git a/desci-server/src/services/Attestation.ts b/desci-server/src/services/Attestation.ts
index f7002350f..15d4a48a1 100644
--- a/desci-server/src/services/Attestation.ts
+++ b/desci-server/src/services/Attestation.ts
@@ -679,10 +679,10 @@ export class AttestationService {
     rootCid: string;
   }) {
     const dpidUrl = process.env.DPID_URL_OVERRIDE ?? 'https://beta.dpid.org';
-    // todo: specify version here
-    const dpidPrefix = `${dpidUrl}/${dpidAlias}`;
+    const dpidPrefix = `${dpidUrl}/${dpidAlias}/v${version}`;
 
     const comments = await prisma.annotation.findMany({ where: { uuid: node.uuid, visible: false } });
+    logger.info({ dpidPrefix, comments }, 'publishDraftComments');
     const publishedComments = await asyncMap(comments, async (comment) => {
       const highlights = (comment.highlights.map((h) => JSON.parse(h as string)) ?? []) as HighlightBlock[];
 
@@ -702,8 +702,6 @@ export class AttestationService {
         return { ...highlight, path: transformedPath };
       });
 
-      logger.info({ highlights }, 'publishDraftComments::Highlights');
-      logger.info({ transformed }, 'publishDraftComments::Transformed');
       return {
         id: comment.id,
         highlights: transformed.map((h) => JSON.stringify(h)),
diff --git a/desci-server/src/services/fixDpid.ts b/desci-server/src/services/fixDpid.ts
index 4de297940..a3ee5690f 100644
--- a/desci-server/src/services/fixDpid.ts
+++ b/desci-server/src/services/fixDpid.ts
@@ -20,6 +20,7 @@ export const getTargetDpidUrl = () => {
   const TARGET_DPID_URL_BY_SERVER_URL = {
     'https://nodes-api-dev.desci.com': 'https://dev-beta.dpid.org',
     'https://nodes-api.desci.com': 'https://beta.dpid.org',
+    'http://localhost:5420': 'http://host.docker.internal:5460',
   };
   const targetDpidUrl = TARGET_DPID_URL_BY_SERVER_URL[process.env.SERVER_URL];
   return targetDpidUrl;
diff --git a/desci-server/src/theGraph.ts b/desci-server/src/theGraph.ts
index 6fef11a88..a9e7ec8e9 100644
--- a/desci-server/src/theGraph.ts
+++ b/desci-server/src/theGraph.ts
@@ -10,7 +10,7 @@ const logger = parentLogger.child({
   module: 'GetIndexedResearchObjects',
 });
 
-const RESOLVER_URL = process.env.DPID_URL_OVERRIDE || getTargetDpidUrl();
+const RESOLVER_URL = getTargetDpidUrl();
 
 export type IndexedResearchObject = {
   /** Hex: Node UUID */

From 9cff31fec67259b9f5658a5fa2620f3f953d1144 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Wed, 2 Oct 2024 21:17:06 +0000
Subject: [PATCH 62/81] overwrite authors index with authors_with_institutions
 index

---
 desci-server/src/controllers/search/query.ts | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/desci-server/src/controllers/search/query.ts b/desci-server/src/controllers/search/query.ts
index 5bbfb05ac..e2f42a6cb 100644
--- a/desci-server/src/controllers/search/query.ts
+++ b/desci-server/src/controllers/search/query.ts
@@ -79,6 +79,14 @@ export const singleQuery = async (
       `Entity provided is '${entity}', overwriting with '${searchEntity}' because ${entity} is accessible in that index.`,
     );
   }
+
+  if (entity === 'authors') {
+    searchEntity = 'authors_with_institutions'; // Overwrite as fields are accessible via 'subfields' index
+    logger.info(
+      { entity, searchEntity },
+      `Entity provided is '${entity}', overwriting with '${searchEntity}' because its a more complete index containing institution data`,
+    );
+  }
   const finalQuery = {
     index: searchEntity,
     body: {

From 8996ad1fe437b8bcd77fefeee2f7107c0c685be7 Mon Sep 17 00:00:00 2001
From: kadami <86646883+kadamidev@users.noreply.github.com>
Date: Wed, 2 Oct 2024 21:17:36 +0000
Subject: [PATCH 63/81] rank autocomplete results by citation/works counts

---
 .../src/services/ElasticSearchService.ts      | 74 +++++++++++++++++++
 1 file changed, 74 insertions(+)

diff --git a/desci-server/src/services/ElasticSearchService.ts b/desci-server/src/services/ElasticSearchService.ts
index 435459d93..0fb2b15c6 100644
--- a/desci-server/src/services/ElasticSearchService.ts
+++ b/desci-server/src/services/ElasticSearchService.ts
@@ -145,6 +145,76 @@ export function createFunctionScoreQuery(query: QueryDslQueryContainer, entity:
   };
 }
 
+export function createAutocompleteFunctionScoreQuery(query: string): QueryDslQueryContainer {
+  const functions: QueryDslFunctionScoreContainer[] = [
+    // Citation count
+    {
+      filter: { range: { cited_by_count: { gte: 1 } } },
+      field_value_factor: {
+        field: 'cited_by_count',
+        factor: 0.01,
+        modifier: 'log1p',
+      },
+      weight: 10,
+    },
+    // Works count
+    {
+      filter: { range: { works_count: { gte: 1 } } },
+      field_value_factor: {
+        field: 'works_count',
+        factor: 0.005,
+        modifier: 'log1p',
+      },
+      weight: 5,
+    },
+  ];
+
+  const shouldClauses: QueryDslQueryContainer[] = [
+    // Exact match on keyword fields
+    {
+      multi_match: {
+        query: query,
+        fields: [
+          'title.keyword^10',
+          'primary_id.keyword^10',
+          'entity_type.keyword^5',
+          'publisher.keyword^5',
+          'issn.keyword^5',
+          'id.keyword^5',
+        ],
+        type: 'best_fields',
+      },
+    },
+    // match on text fields
+    {
+      multi_match: {
+        query: query,
+        fields: [
+          'title^3',
+          'description^2',
+          'publisher^2',
+          'subfield_display_name^2',
+          'institution_data.display_name^2',
+        ],
+      },
+    },
+  ];
+
+  const boolQuery: QueryDslBoolQuery = {
+    should: shouldClauses,
+    minimum_should_match: 1,
+  };
+
+  const functionScoreQuery: QueryDslFunctionScoreQuery = {
+    query: { bool: boolQuery },
+    functions,
+    boost_mode: 'multiply' as QueryDslFunctionBoostMode,
+    score_mode: 'sum' as QueryDslFunctionScoreMode,
+  };
+
+  return { function_score: functionScoreQuery };
+}
+
 export function buildSimpleStringQuery(query: string, entity: string, fuzzy?: number) {
   return {
     simple_query_string: {
@@ -314,6 +384,10 @@ export function buildMultiMatchQuery(
   entity: string,
   fuzzy: string | number = 0,
 ): QueryDslQueryContainer {
+  if (entity === 'autocomplete_full') {
+    return createAutocompleteFunctionScoreQuery(query);
+  }
+
   const fields = getRelevantFields(entity);
   const terms = query.split(/\s+/);
   const termCount = terms.length;

From 364e6e5646f17d16d71b24cbccbefc030ffb79fa Mon Sep 17 00:00:00 2001
From: m0ar <edvard@hubinette.me>
Date: Mon, 7 Oct 2024 16:04:22 +0200
Subject: [PATCH 64/81] server: use /readyz for probes and squelch logging on
 that route

---
 desci-server/kubernetes/deployment_dev.yaml     |  6 +++---
 desci-server/kubernetes/deployment_prod.yaml    |  6 +++---
 desci-server/kubernetes/deployment_staging.yaml |  6 +++---
 desci-server/src/server.ts                      | 13 +++++++++----
 4 files changed, 18 insertions(+), 13 deletions(-)

diff --git a/desci-server/kubernetes/deployment_dev.yaml b/desci-server/kubernetes/deployment_dev.yaml
index 8c5ea447c..1703430a3 100644
--- a/desci-server/kubernetes/deployment_dev.yaml
+++ b/desci-server/kubernetes/deployment_dev.yaml
@@ -122,21 +122,21 @@ spec:
           # restart pod after failureThreshold*periodSeconds total seconds
           livenessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 80
             periodSeconds: 3
           # temporarily stop sending traffic to pod after failureThreshold*periodSeconds total seconds
           readinessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 3
             periodSeconds: 1
           # wait for pod to start for failureThreshold*periodSeconds total seconds
           startupProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 200
             periodSeconds: 1
diff --git a/desci-server/kubernetes/deployment_prod.yaml b/desci-server/kubernetes/deployment_prod.yaml
index 12bb1f955..0cfe2e829 100755
--- a/desci-server/kubernetes/deployment_prod.yaml
+++ b/desci-server/kubernetes/deployment_prod.yaml
@@ -121,21 +121,21 @@ spec:
           # restart pod after failureThreshold*periodSeconds total seconds
           livenessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 80
             periodSeconds: 3
           # temporarily stop sending traffic to pod after failureThreshold*periodSeconds total seconds
           readinessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 3
             periodSeconds: 1
           # wait for pod to start for failureThreshold*periodSeconds total seconds
           startupProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 200
             periodSeconds: 1
diff --git a/desci-server/kubernetes/deployment_staging.yaml b/desci-server/kubernetes/deployment_staging.yaml
index 74bdb2aba..d94eca4fc 100644
--- a/desci-server/kubernetes/deployment_staging.yaml
+++ b/desci-server/kubernetes/deployment_staging.yaml
@@ -132,21 +132,21 @@ spec:
           # restart pod after failureThreshold*periodSeconds total seconds
           livenessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 80
             periodSeconds: 3
           # temporarily stop sending traffic to pod after failureThreshold*periodSeconds total seconds
           readinessProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 3
             periodSeconds: 1
           # wait for pod to start for failureThreshold*periodSeconds total seconds
           startupProbe:
             httpGet:
-              path: /
+              path: /readyz
               port: server-api
             failureThreshold: 200
             periodSeconds: 1
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 172964d54..9e9ec8f2e 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -89,7 +89,12 @@ class AppServer {
       next();
     });
 
-    // // attach user info to every request
+    // Respond to probes before we do any other work on the request
+    this.app.get('/readyz', (_, res) => {
+      res.status(200).json({ status: 'ok' });
+    });
+
+    // attach user info to every request
     this.app.use(async (req: RequestWithUser, res, next) => {
       const token = await extractAuthToken(req);
 
@@ -155,9 +160,6 @@ class AppServer {
   }
 
   #attachRouteHandlers() {
-    this.app.get('/readyz', (_, res) => {
-      res.status(200).json({ status: 'ok' });
-    });
     this.app.get('/version', (req, res) => {
       const revision = child.execSync('git rev-parse HEAD').toString().trim();
       // const sha256 = child.execSync('find /app/desci-server/dist -type f -exec sha256sum \\;').toString().trim();
@@ -185,6 +187,9 @@ class AppServer {
     this.app.use(
       pinoHttp({
         logger,
+        autoLogging: {
+          ignore: (req) => req.url === "/readyz"
+        },
         customProps: (req: RequestWithUser, res) => ({
           userAuth: req.userAuth,
           traceId: (als.getStore() as any)?.traceId,

From 7c9bf4b52237652dce88ddb76252d26637d96eee Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 7 Oct 2024 10:31:05 -0500
Subject: [PATCH 65/81] distributed trace id support on desci-repo, better log
 messages for debugging

---
 desci-repo/package.json                       |   4 +-
 desci-repo/src/controllers/nodes/documents.ts |  62 ++-
 desci-repo/src/logger.ts                      |  68 +++
 desci-repo/src/middleware/ensureApiKey.ts     |   2 +-
 desci-repo/src/middleware/guard.ts            |   2 +
 desci-repo/src/repo.ts                        |   2 +-
 desci-repo/src/server.ts                      |  44 +-
 desci-repo/src/services/manifestRepo.ts       |   7 +
 desci-repo/yarn.lock                          | 509 +++++++++++++++++-
 .../src/controllers/nodes/documents.ts        |   8 +-
 .../src/controllers/nodes/draftCreate.ts      |   8 +-
 desci-server/src/services/repoService.ts      |  25 +-
 12 files changed, 689 insertions(+), 52 deletions(-)

diff --git a/desci-repo/package.json b/desci-repo/package.json
index 6d8a9ff1c..15fd4ccd0 100644
--- a/desci-repo/package.json
+++ b/desci-repo/package.json
@@ -69,8 +69,10 @@
   },
   "dependencies": {
     "@desci-labs/desci-models": "0.2.11",
-    "@sentry/node": "^7.84.0",
+    "@sentry/node": "^8.29.0",
+    "@sentry/profiling-node": "^8.32.0",
     "@sentry/tracing": "^7.84.0",
+    "async_hooks": "^1.0.0",
     "axios": "^1.6.2",
     "cors": "^2.8.5",
     "deep-equal": "^2.2.3",
diff --git a/desci-repo/src/controllers/nodes/documents.ts b/desci-repo/src/controllers/nodes/documents.ts
index 0292f664c..3d23f3e6e 100644
--- a/desci-repo/src/controllers/nodes/documents.ts
+++ b/desci-repo/src/controllers/nodes/documents.ts
@@ -1,6 +1,6 @@
 import { Request, Response } from 'express';
 import { ResearchObjectDocument } from '../../types.js';
-import { logger } from '../../logger.js';
+import { logger as parentLogger } from '../../logger.js';
 import { AutomergeUrl, DocumentId } from '@automerge/automerge-repo';
 import { RequestWithNode } from '../../middleware/guard.js';
 import { backendRepo } from '../../repo.js';
@@ -13,7 +13,9 @@ import { ensureUuidEndsWithDot } from './utils.js';
 import { ManifestActions } from '@desci-labs/desci-models';
 
 export const createNodeDocument = async function (req: Request, res: Response) {
-  logger.info('START [CreateNodeDocument]', req.body, req.params);
+  const logger = parentLogger.child({ module: 'createNodeDocument', body: req.body, param: req.params });
+  logger.trace('createNodeDocument');
+
   try {
     if (!(req.body.uuid && req.body.manifest)) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
@@ -21,10 +23,8 @@ export const createNodeDocument = async function (req: Request, res: Response) {
     }
 
     let { uuid, manifest } = req.body;
-
-    logger.info('[Backend REPO]:', backendRepo.networkSubsystem.peerId);
-
     uuid = ensureUuidEndsWithDot(uuid);
+    logger.info({ peerId: backendRepo.networkSubsystem.peerId, uuid }, '[Backend REPO]:');
     const handle = backendRepo.create<ResearchObjectDocument>();
     handle.change(
       (d) => {
@@ -35,62 +35,80 @@ export const createNodeDocument = async function (req: Request, res: Response) {
       { message: 'Init Document', time: Date.now() },
     );
 
+    logger.info({ peerId: backendRepo.networkSubsystem.peerId, uuid }, 'Document Created');
+
     const document = await handle.doc();
 
+    logger.trace({ document: !!document }, 'Document Retrieved');
+
     const node = await findNodeByUuid(uuid);
+    logger.trace({ node }, 'Node Retrieved');
     // await prisma.node.update({ where: { id: node.id }, data: { manifestDocumentId: handle.documentId } });
     const result = await query('UPDATE "Node" SET "manifestDocumentId" = $1 WHERE uuid = $2', [
       handle.documentId,
       uuid,
     ]);
 
-    logger.info({ node, result }, '[createNodeDocument] UPDATE DOCUMENT ID');
-    logger.info('[AUTOMERGE]::[HANDLE NEW CHANGED]', handle.url, handle.isReady(), document);
+    logger.trace(
+      { node, uuid, documentId: handle.documentId, url: handle.url, isReady: handle.isReady() },
+      'Node Updated',
+    );
+
+    logger.info({ result }, 'UPDATE DOCUMENT ID');
 
     res.status(200).send({ ok: true, documentId: handle.documentId, document });
-    logger.info('END [CreateNodeDocument]', { documentId: handle.documentId, document });
+
+    logger.info({ documentId: handle.documentId, document }, 'END');
   } catch (err) {
-    console.error('Error [CreateNodeDocument]', err);
-    logger.error('END [CreateNodeDocument]', err);
+    logger.error({ err }, 'Error');
     res.status(500).send({ ok: false, message: JSON.stringify(err) });
   }
 };
 
 export const getLatestNodeManifest = async function (req: Request, res: Response) {
-  logger.info({ params: req.params }, 'START [getLatestNodeManifest]');
+  const logger = parentLogger.child({ module: 'getLatestNodeManifest', params: req.params });
+  logger.trace('getLatestNodeManifest');
+
   try {
-    logger.info({ params: req.params }, '[getLatestNodeManifest]');
     if (!req.params.uuid) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
+      logger.trace('No UUID FOUND');
       return;
     }
 
     const { uuid } = req.params;
-    const node = await findNodeByUuid(uuid);
-    logger.trace('[getLatestNodeManifest::node]', { node });
+    const node = await findNodeByUuid(ensureUuidEndsWithDot(uuid));
+    logger.trace({ node }, 'Retrieve Node');
 
     if (!node) {
-      logger.warn('[getLatestNodeManifest]', `Node with uuid ${uuid} not found!`);
+      logger.warn({ uuid }, `Node with uuid ${uuid} not found!`);
       res.status(400).send({ ok: false, message: `Node with uuid ${uuid} not found!` });
       return;
     }
 
+    logger.info(
+      { manifestDocumentId: node.manifestDocumentId, url: getAutomergeUrl(node.manifestDocumentId) },
+      'Node manifestDocumentId',
+    );
+
     const automergeUrl = getAutomergeUrl(node.manifestDocumentId as DocumentId);
     const handle = backendRepo.find<ResearchObjectDocument>(automergeUrl as AutomergeUrl);
+    logger.trace({ uuid, automergeUrl }, 'Document Handle retrieved');
 
+    logger.trace({ uuid, automergeUrl }, 'Get DOCUMENT');
     const document = await handle.doc();
+    logger.trace({ uuid, automergeUrl }, 'DOCUMENT Retrieved');
 
     logger.info({ manifest: document?.manifest, automergeUrl }, '[getLatestNodeManifest::END]');
     res.status(200).send({ ok: true, document });
   } catch (err) {
-    console.error('Error [getLatestNodeManifest]', err);
-    logger.error(err, 'Error [getLatestNodeManifest]');
+    logger.error({ err }, 'Error');
     res.status(500).send({ ok: false, message: JSON.stringify(err) });
   }
 };
 
 export const dispatchDocumentChange = async function (req: RequestWithNode, res: Response) {
-  logger.info({ params: req.params }, 'START [dispatchDocumentChange]');
+  const logger = parentLogger.child({ module: 'dispatchDocumentChange', body: req.body, params: req.params });
   try {
     if (!(req.body.uuid && req.body.documentId && req.body.actions)) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
@@ -109,8 +127,8 @@ export const dispatchDocumentChange = async function (req: RequestWithNode, res:
 
     const dispatchChange = getDocumentUpdater(documentId);
 
+    logger.info({ actions }, 'Actions');
     for (const action of actions) {
-      logger.info({ action }, '[AUTOMERGE]::[dispatch Update]');
       document = await dispatchChange(action);
     }
 
@@ -119,16 +137,16 @@ export const dispatchDocumentChange = async function (req: RequestWithNode, res:
       return;
     }
 
-    logger.info('END [dispatchDocumentChange]', { document });
     res.status(200).send({ ok: true, document });
+    logger.trace('END');
   } catch (err) {
-    logger.error(err, 'Error [dispatchDocumentChange]');
-
+    logger.error({ err }, 'Error [dispatchDocumentChange]');
     res.status(500).send({ ok: false, message: JSON.stringify(err) });
   }
 };
 
 export const dispatchDocumentActions = async function (req: RequestWithNode, res: Response) {
+  const logger = parentLogger.child({ module: 'dispatchDocumentActions' });
   logger.info({ body: req.body }, 'START [dispatchDocumentActions]');
   try {
     if (!(req.body.uuid && req.body.documentId && req.body.actions)) {
diff --git a/desci-repo/src/logger.ts b/desci-repo/src/logger.ts
index 6767b59ab..d00ad9d6b 100644
--- a/desci-repo/src/logger.ts
+++ b/desci-repo/src/logger.ts
@@ -2,6 +2,9 @@ import { pino } from 'pino';
 import { fileURLToPath } from 'url';
 import path from 'path';
 import { pool } from './db/index.js';
+import { AsyncLocalStorage } from 'async_hooks';
+
+export const als = new AsyncLocalStorage();
 
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
@@ -24,11 +27,76 @@ const fileTransport = {
 
 console.log('[DIR NAME]::', __dirname, __filename, logLevel);
 
+function logMethodHooks(inputArgs, method) {
+  try {
+    //get caller
+    const stack = new Error()?.stack?.split('\n') ?? [];
+    // find first line that is not from this file
+
+    let callerFilePath;
+    try {
+      const intermediate = stack.filter(
+        (a) => a.includes('file:///') && !(a.includes('/dist/logger.') || a.includes('/src/logger.')),
+      )[0];
+
+      if (intermediate) {
+        callerFilePath = intermediate
+          .split('(')[1]
+          .split(')')[0]
+          .replace('file:///app/desci-server/src/', '')
+          .replace('file:///app/dist/', '');
+      }
+    } catch (err) {
+      // callerFilePath = '-unknown-';
+    }
+
+    let target = typeof inputArgs[0] == 'string' ? 1 : 0;
+    let newInputArgs = [...inputArgs];
+
+    if (!newInputArgs[target]) {
+      newInputArgs[target] = {};
+    } else if (typeof newInputArgs[target] !== 'object') {
+      const rawValue = {};
+      rawValue['stringLogs'] = inputArgs;
+
+      rawValue['error'] =
+        'this means your pino log statement is incorrectly formatted, check the order of the arguments';
+      target = 0;
+      newInputArgs[target] = { rawValue };
+      newInputArgs = [newInputArgs[0], inputArgs[0]];
+    }
+
+    newInputArgs[target]['caller'] = callerFilePath;
+
+    const traceId = (als.getStore() as any)?.traceId;
+    const callerTraceId = (als.getStore() as any)?.callerTraceId;
+    if (traceId) {
+      newInputArgs[target]['traceId'] = traceId;
+      newInputArgs[target]['callerTraceId'] = callerTraceId || '';
+
+      const timingArray = (als.getStore() as any)?.timing;
+      if (timingArray) {
+        newInputArgs[target]['traceIndex'] = timingArray.length;
+        newInputArgs[target]['traceDelta'] = Date.now() - timingArray[timingArray.length - 1];
+      }
+      (als.getStore() as any)?.timing.push(Date.now());
+    }
+
+    return method.apply(this, [...newInputArgs]);
+  } catch (err) {
+    // logger.error({ err }, 'error in logMethod hook');
+    return method.apply(this, inputArgs);
+  }
+}
+
 export const logger = pino({
   level: logLevel,
   serializers: {
     files: omitBuffer,
   },
+  hooks: {
+    logMethod: logMethodHooks,
+  },
   transport:
     process.env.NODE_ENV === 'production'
       ? { targets: [] }
diff --git a/desci-repo/src/middleware/ensureApiKey.ts b/desci-repo/src/middleware/ensureApiKey.ts
index 042389c64..b538037bf 100644
--- a/desci-repo/src/middleware/ensureApiKey.ts
+++ b/desci-repo/src/middleware/ensureApiKey.ts
@@ -5,7 +5,7 @@ const REPO_SERVICE_API_KEY = process.env.REPO_SERVICE_SECRET_KEY;
 
 export const ensureApiKey = async (req: Request, res: Response, next: NextFunction) => {
   const apiKey = req.headers['x-api-key'];
-  logger.info({ module: 'EnsureApiKey', apiKeyLength: apiKey?.length }, 'VERIFY API KEY from', req.hostname);
+  logger.info({ module: 'EnsureApiKey', apiKeyLength: apiKey?.length, hostname: req.hostname }, 'VERIFY API KEY from');
   if (!apiKey || apiKey !== REPO_SERVICE_API_KEY) {
     res.sendStatus(401);
     return;
diff --git a/desci-repo/src/middleware/guard.ts b/desci-repo/src/middleware/guard.ts
index b5df98e9b..b10576409 100644
--- a/desci-repo/src/middleware/guard.ts
+++ b/desci-repo/src/middleware/guard.ts
@@ -20,6 +20,8 @@ export type Node = {
 
 export interface RequestWithUser extends Request {
   user: { email: string; id: number };
+  traceId?: string;
+  callerTraceId?: string;
 }
 
 export interface RequestWithNode extends RequestWithUser {
diff --git a/desci-repo/src/repo.ts b/desci-repo/src/repo.ts
index 9699a2d0f..ca6ea0c83 100644
--- a/desci-repo/src/repo.ts
+++ b/desci-repo/src/repo.ts
@@ -42,7 +42,7 @@ const config: RepoConfig = {
 
       const userId = peerId.split(':')?.[0]?.split('-')?.[1];
       const isAuthorised = await verifyNodeDocumentAccess(Number(userId), documentId);
-      logger.info({ peerId, userId, documentId, isAuthorised }, '[SHARE POLICY CALLED]::');
+      logger.trace({ peerId, userId, documentId, isAuthorised }, '[SHARE POLICY CALLED]::');
       return isAuthorised;
     } catch (err) {
       logger.error({ err }, 'Error in share policy');
diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 17d3c7cfb..354e960cb 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -17,9 +17,11 @@ import routes from './routes/index.js';
 
 import { fileURLToPath } from 'url';
 import { socket as wsSocket } from './repo.js';
-import { logger } from './logger.js';
+import { als, logger } from './logger.js';
 import { extractAuthToken, extractUserFromToken } from './middleware/permissions.js';
 import { pinoHttp } from 'pino-http';
+import { RequestWithUser } from './middleware/guard.js';
+import { nodeProfilingIntegration } from '@sentry/profiling-node';
 
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
@@ -47,6 +49,17 @@ const allowlist = [
   'loca.lt' /** NOT SECURE */,
   'vercel.app' /** NOT SECURE */,
 ];
+
+function getRemoteAddress(req: Request) {
+  let xForwardedFor = req.headers['x-forwarded-for'];
+  xForwardedFor = Array.isArray(xForwardedFor) ? xForwardedFor.join(',') : xForwardedFor;
+  if (xForwardedFor) {
+    return xForwardedFor.split(',')[0].trim();
+  } else {
+    return req.socket.remoteAddress;
+  }
+}
+
 class AppServer {
   #readyResolvers: ((value: any) => void)[] = [];
 
@@ -80,6 +93,19 @@ class AppServer {
       next();
     });
 
+    // attach trace id to every request
+    this.app.use((req: RequestWithUser, res, next) => {
+      req.traceId = v4();
+      req.callerTraceId = req.headers['x-api-remote-traceid'] as string;
+
+      res.header('X-Desci-Trace-Id', req.traceId);
+      res.header('X-Desci-Request-Trace-Id', req.headers['x-api-remote-traceid']);
+
+      als.run({ traceId: req.traceId, callerTraceId: req.callerTraceId, timing: [new Date()] }, () => {
+        next();
+      });
+    });
+
     this.#initTelemetry();
 
     this.app.use(bodyParser.json({ limit: '100mb' }));
@@ -138,6 +164,12 @@ class AppServer {
     this.app.use(
       pinoHttp({
         logger,
+        customProps: (req: RequestWithUser) => ({
+          traceId: (als.getStore() as any)?.traceId,
+          callerTraceId: req.headers['x-api-remote-traceid'],
+          http: 1,
+          remoteAddress: getRemoteAddress(req),
+        }),
         serializers: {
           res: (res) => {
             if (IS_DEV) {
@@ -172,15 +204,17 @@ class AppServer {
       Sentry.init({
         dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
         release: 'desci-nodes-repo@' + process.env.npm_package_version,
-        integrations: [],
+        integrations: [nodeProfilingIntegration()],
         // Set tracesSampleRate to 1.0 to capture 100%
         // of transactions for performance monitoring.
         // We recommend adjusting this value in production
         tracesSampleRate: 1.0,
+        profilesSampleRate: 1.0,
       });
-      this.app.use(Sentry.Handlers.requestHandler());
-      this.app.use(Sentry.Handlers.tracingHandler());
-      this.app.use(Sentry.Handlers.errorHandler());
+      // this.app.use(Sentry.Handlers.requestHandler());
+      // this.app.use(Sentry.Handlers.tracingHandler());
+      // this.app.use(Sentry.Handlers.errorHandler());
+      Sentry.setupExpressErrorHandler(this.app);
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
     }
diff --git a/desci-repo/src/services/manifestRepo.ts b/desci-repo/src/services/manifestRepo.ts
index 9b795d803..ee7845bc3 100644
--- a/desci-repo/src/services/manifestRepo.ts
+++ b/desci-repo/src/services/manifestRepo.ts
@@ -33,11 +33,15 @@ export function assertNever(value: never) {
 
 export const getDocumentUpdater = (documentId: DocumentId) => {
   const automergeUrl = getAutomergeUrl(documentId);
+  logger.trace({ automergeUrl }, 'Find handle');
   const handle = backendRepo.find<ResearchObjectDocument>(automergeUrl as AutomergeUrl);
+  logger.trace({ automergeUrl }, 'Retrieved handle');
 
   return async (action: ManifestActions) => {
     if (!handle) return;
+    logger.trace({ documentId, action }, 'get doc');
     let latestDocument = await handle.doc();
+    logger.trace({ latestDocument }, 'retrieved doc');
 
     if (!latestDocument) {
       logger.error({ node: documentId }, 'Automerge document not found');
@@ -350,7 +354,10 @@ export const getDocumentUpdater = (documentId: DocumentId) => {
       default:
         assertNever(action);
     }
+
+    logger.trace({ documentId }, 'get updated doc');
     latestDocument = await handle.doc();
+    logger.trace({ action }, 'retrieved updated doc');
 
     if (latestDocument) {
       const updatedHeads = getHeads(latestDocument);
diff --git a/desci-repo/yarn.lock b/desci-repo/yarn.lock
index c9feb1816..f3c217550 100644
--- a/desci-repo/yarn.lock
+++ b/desci-repo/yarn.lock
@@ -260,6 +260,293 @@
     "@nodelib/fs.scandir" "2.1.5"
     fastq "^1.6.0"
 
+"@opentelemetry/api-logs@0.52.1":
+  version "0.52.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.52.1.tgz#52906375da4d64c206b0c4cb8ffa209214654ecc"
+  integrity sha512-qnSqB2DQ9TPP96dl8cDubDvrUyWc0/sK81xHTK8eSUspzDM3bsewX903qclQFvVhgStjRWdC5bLb3kQqMkfV5A==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api-logs@0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.53.0.tgz#c478cbd8120ec2547b64edfa03a552cfe42170be"
+  integrity sha512-8HArjKx+RaAI8uEIgcORbZIPklyh1YLjPSBus8hjRmvLi6DeFzgOcdZ7KwPabKj8mXF8dX0hyfAyGfycz0DbFw==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api@^1.0.0", "@opentelemetry/api@^1.8", "@opentelemetry/api@^1.9.0":
+  version "1.9.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api/-/api-1.9.0.tgz#d03eba68273dc0f7509e2a3d5cba21eae10379fe"
+  integrity sha512-3giAOQvZiH5F9bMlMiv8+GSPMeqg0dbaeo58/0SlA9sxSqZhnUtxzX9/2FzyhS9sWQf5S0GJE0AKBrFqjpeYcg==
+
+"@opentelemetry/context-async-hooks@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/context-async-hooks/-/context-async-hooks-1.26.0.tgz#fa92f722cf685685334bba95f258d3ef9fce60f6"
+  integrity sha512-HedpXXYzzbaoutw6DFLWLDket2FwLkLpil4hGCZ1xYEIMTcivdfwEOISgdbLEWyG3HW52gTq2V9mOVJrONgiwg==
+
+"@opentelemetry/core@1.26.0", "@opentelemetry/core@^1.1.0", "@opentelemetry/core@^1.25.1", "@opentelemetry/core@^1.8.0":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/core/-/core-1.26.0.tgz#7d84265aaa850ed0ca5813f97d831155be42b328"
+  integrity sha512-1iKxXXE8415Cdv0yjG3G6hQnB5eVEsJce3QaawX8SjDn0mAS0ZM8fAbZZJD4ajvhC15cePvosSCut404KrIIvQ==
+  dependencies:
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
+"@opentelemetry/instrumentation-amqplib@^0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-amqplib/-/instrumentation-amqplib-0.42.0.tgz#b3cab5a7207736a30d769962eed3af3838f986c4"
+  integrity sha512-fiuU6OKsqHJiydHWgTRQ7MnIrJ2lEqsdgFtNIH4LbAUJl/5XmrIeoDzDnox+hfkgWK65jsleFuQDtYb5hW1koQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-connect@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-connect/-/instrumentation-connect-0.39.0.tgz#32bdbaac464cba061c95df6c850ee81efdd86f8b"
+  integrity sha512-pGBiKevLq7NNglMgqzmeKczF4XQMTOUOTkK8afRHMZMnrK3fcETyTH7lVaSozwiOM3Ws+SuEmXZT7DYrrhxGlg==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@types/connect" "3.4.36"
+
+"@opentelemetry/instrumentation-dataloader@0.12.0":
+  version "0.12.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-dataloader/-/instrumentation-dataloader-0.12.0.tgz#de03a3948dec4f15fed80aa424d6bd5d6a8d10c7"
+  integrity sha512-pnPxatoFE0OXIZDQhL2okF//dmbiWFzcSc8pUg9TqofCLYZySSxDCgQc69CJBo5JnI3Gz1KP+mOjS4WAeRIH4g==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation-express@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-express/-/instrumentation-express-0.42.0.tgz#279f195aa66baee2b98623a16666c6229c8e7564"
+  integrity sha512-YNcy7ZfGnLsVEqGXQPT+S0G1AE46N21ORY7i7yUQyfhGAL4RBjnZUqefMI0NwqIl6nGbr1IpF0rZGoN8Q7x12Q==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
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   version "0.11.0"
   resolved "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz"
@@ -270,6 +557,15 @@
   resolved "https://registry.npmjs.org/@pkgr/core/-/core-0.1.1.tgz"
   integrity sha512-cq8o4cWH0ibXh9VGi5P20Tu9XF/0fFXl9EUinr9QfTM7a7p0oTA4iJRCQWppXR1Pg8dSM0UCItCkPwsk9qWWYA==
 
+"@prisma/instrumentation@5.19.1":
+  version "5.19.1"
+  resolved "https://registry.yarnpkg.com/@prisma/instrumentation/-/instrumentation-5.19.1.tgz#146319cf85f22b7a43296f0f40cfeac55516e66e"
+  integrity sha512-VLnzMQq7CWroL5AeaW0Py2huiNKeoMfCH3SUxstdzPrlWQi6UQ9UrfcbUkNHlVFqOMacqy8X/8YtE0kuKDpD9w==
+  dependencies:
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+    "@opentelemetry/sdk-trace-base" "^1.22"
+
 "@sentry-internal/tracing@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry-internal/tracing/-/tracing-7.99.0.tgz"
@@ -287,15 +583,75 @@
     "@sentry/types" "7.99.0"
     "@sentry/utils" "7.99.0"
 
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+    "@sentry/utils" "8.33.1"
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+    "@sentry/core" "8.33.1"
+    "@sentry/opentelemetry" "8.33.1"
+    "@sentry/types" "8.33.1"
+    "@sentry/utils" "8.33.1"
+    import-in-the-middle "^1.11.0"
+
+"@sentry/opentelemetry@8.33.1":
+  version "8.33.1"
+  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.33.1.tgz#c7419a14ca00f8326a32673f19016098eaf9ff9a"
+  integrity sha512-D2aE2G0DUHLLnfbOXrTjiNJKAs/RZfOBJMidI4fC2AIwqCmrp55Aex4dRq4hxd8MPLR92Kt/ikHeJxlzWB15KA==
+  dependencies:
+    "@sentry/core" "8.33.1"
+    "@sentry/types" "8.33.1"
+    "@sentry/utils" "8.33.1"
+
+"@sentry/profiling-node@^8.32.0":
+  version "8.33.1"
+  resolved "https://registry.yarnpkg.com/@sentry/profiling-node/-/profiling-node-8.33.1.tgz#13143360b7adf3d35d2e701191378cde0a6cb419"
+  integrity sha512-mpgcqT/yUyWiRKjHFJ6UMjNmMgAYK4aeaMQDL7P61y5mrVxfK9vRQbKuXdP9XiyiZe06j1PSskiBEA2S1cDVJQ==
+  dependencies:
+    "@sentry/core" "8.33.1"
+    "@sentry/node" "8.33.1"
+    "@sentry/types" "8.33.1"
+    "@sentry/utils" "8.33.1"
+    detect-libc "^2.0.2"
+    node-abi "^3.61.0"
 
 "@sentry/tracing@^7.84.0":
   version "7.99.0"
@@ -309,6 +665,11 @@
   resolved "https://registry.npmjs.org/@sentry/types/-/types-7.99.0.tgz"
   integrity sha512-94qwOw4w40sAs5mCmzcGyj8ZUu/KhnWnuMZARRq96k+SjRW/tHFAOlIdnFSrt3BLPvSOK7R3bVAskZQ0N4FTmA==
 
+"@sentry/types@8.33.1":
+  version "8.33.1"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.33.1.tgz#3c519f974c3c3f3ea8b4e6f930b676f954c26f87"
+  integrity sha512-GjoAMvwtpIemoF/IiwZ7A60g4nQv3qwzR21GvJqDVUoKD0e8pv9OLX+HyXoUat4wEDGSuDUcUyUKD2G+od73QA==
+
 "@sentry/utils@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry/utils/-/utils-7.99.0.tgz"
@@ -316,6 +677,13 @@
   dependencies:
     "@sentry/types" "7.99.0"
 
+"@sentry/utils@8.33.1":
+  version "8.33.1"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.33.1.tgz#8cfc56b7dbc27135028e77aa5d553b15f4ba0466"
+  integrity sha512-uzuYpiiJuFY3N4WNHMBWUQX5oNv2t/TbG0OHRp3Rr7yeu+HSfD542TIp9/gMZ+G0Cxd8AmVO3wkKIFbk0TL4Qg==
+  dependencies:
+    "@sentry/types" "8.33.1"
+
 "@tsconfig/node10@^1.0.7":
   version "1.0.9"
   resolved "https://registry.npmjs.org/@tsconfig/node10/-/node10-1.0.9.tgz"
@@ -356,6 +724,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/connect@3.4.36":
+  version "3.4.36"
+  resolved "https://registry.yarnpkg.com/@types/connect/-/connect-3.4.36.tgz#e511558c15a39cb29bd5357eebb57bd1459cd1ab"
+  integrity sha512-P63Zd/JUGq+PdrM1lv0Wv5SBYeA2+CORvbrXbngriYY0jzLUWfQMQQxOhjONEz/wlHOAxOdY7CY65rgQdTjq2w==
+  dependencies:
+    "@types/node" "*"
+
 "@types/cors@^2.8.17":
   version "2.8.17"
   resolved "https://registry.npmjs.org/@types/cors/-/cors-2.8.17.tgz"
@@ -427,6 +802,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/mysql@2.15.26":
+  version "2.15.26"
+  resolved "https://registry.yarnpkg.com/@types/mysql/-/mysql-2.15.26.tgz#f0de1484b9e2354d587e7d2bd17a873cc8300836"
+  integrity sha512-DSLCOXhkvfS5WNNPbfn2KdICAmk8lLc+/PNvnPnF7gOdMZCxopXduqv0OQ13y/yA/zXTSikZZqVgybUxOEg6YQ==
+  dependencies:
+    "@types/node" "*"
+
 "@types/node@*":
   version "20.11.13"
   resolved "https://registry.npmjs.org/@types/node/-/node-20.11.13.tgz"
@@ -439,6 +821,31 @@
   resolved "https://registry.npmjs.org/@types/parse-json/-/parse-json-4.0.2.tgz"
   integrity sha512-dISoDXWWQwUquiKsyZ4Ng+HX2KsPL7LyHKHQwgGFEA3IaKac4Obd+h2a/a6waisAoepJlBcx9paWqjA8/HVjCw==
 
+"@types/pg-pool@2.0.6":
+  version "2.0.6"
+  resolved "https://registry.yarnpkg.com/@types/pg-pool/-/pg-pool-2.0.6.tgz#1376d9dc5aec4bb2ec67ce28d7e9858227403c77"
+  integrity sha512-TaAUE5rq2VQYxab5Ts7WZhKNmuN78Q6PiFonTDdpbx8a1H0M1vhy3rhiMjl+e2iHmogyMw7jZF4FrE6eJUy5HQ==
+  dependencies:
+    "@types/pg" "*"
+
+"@types/pg@*":
+  version "8.11.10"
+  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.11.10.tgz#b8fb2b2b759d452fe3ec182beadd382563b63291"
+  integrity sha512-LczQUW4dbOQzsH2RQ5qoeJ6qJPdrcM/DcMLoqWQkMLMsq83J5lAX3LXjdkWdpscFy67JSOWDnh7Ny/sPFykmkg==
+  dependencies:
+    "@types/node" "*"
+    pg-protocol "*"
+    pg-types "^4.0.1"
+
+"@types/pg@8.6.1":
+  version "8.6.1"
+  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.6.1.tgz#099450b8dc977e8197a44f5229cedef95c8747f9"
+  integrity sha512-1Kc4oAGzAl7uqUStZCDvaLFqZrW9qWSjXOmBfdgyBP5La7Us6Mg4GBvRlSoaZMhQF/zSj1C8CtKMBkoiT8eL8w==
+  dependencies:
+    "@types/node" "*"
+    pg-protocol "*"
+    pg-types "^2.2.0"
+
 "@types/pg@^8.10.9":
   version "8.11.0"
   resolved "https://registry.npmjs.org/@types/pg/-/pg-8.11.0.tgz"
@@ -480,6 +887,11 @@
     "@types/mime" "*"
     "@types/node" "*"
 
+"@types/shimmer@^1.0.2", "@types/shimmer@^1.2.0":
+  version "1.2.0"
+  resolved "https://registry.yarnpkg.com/@types/shimmer/-/shimmer-1.2.0.tgz#9b706af96fa06416828842397a70dfbbf1c14ded"
+  integrity sha512-UE7oxhQLLd9gub6JKIAhDq06T0F6FnztwMNRvYgjeQSBeMc1ZG/tA47EwfduvkuQS8apbkM/lpLpWsaCeYsXVg==
+
 "@types/strip-bom@^3.0.0":
   version "3.0.0"
   resolved "https://registry.npmjs.org/@types/strip-bom/-/strip-bom-3.0.0.tgz"
@@ -597,6 +1009,11 @@ accepts@~1.3.8:
     mime-types "~2.1.34"
     negotiator "0.6.3"
 
+acorn-import-attributes@^1.9.5:
+  version "1.9.5"
+  resolved "https://registry.yarnpkg.com/acorn-import-attributes/-/acorn-import-attributes-1.9.5.tgz#7eb1557b1ba05ef18b5ed0ec67591bfab04688ef"
+  integrity sha512-n02Vykv5uA3eHGM/Z2dQrcD56kL8TyDb2p1+0P83PClMnC/nc+anbQRhIOWnSq4Ke/KvDPrY3C9hDtC/A3eHnQ==
+
 acorn-jsx@^5.3.2:
   version "5.3.2"
   resolved "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.3.2.tgz"
@@ -612,6 +1029,11 @@ acorn@^8.4.1, acorn@^8.9.0:
   resolved "https://registry.npmjs.org/acorn/-/acorn-8.11.3.tgz"
   integrity sha512-Y9rRfJG5jcKOE0CLisYbojUjIrIEE7AGMzA/Sm4BslANhbS+cDMpgBdcPT91oJ7OuJ9hYJBx59RjbhxVnrF8Xg==
 
+acorn@^8.8.2:
+  version "8.12.1"
+  resolved "https://registry.yarnpkg.com/acorn/-/acorn-8.12.1.tgz#71616bdccbe25e27a54439e0046e89ca76df2248"
+  integrity sha512-tcpGyI9zbizT9JbV6oYE477V6mTlXvvi0T0G3SNIYE2apm/G5huBa1+K89VGeovbg+jycCrfhl3ADxErOuO6Jg==
+
 aggregate-error@^3.0.0:
   version "3.1.0"
   resolved "https://registry.npmjs.org/aggregate-error/-/aggregate-error-3.1.0.tgz"
@@ -777,6 +1199,11 @@ astral-regex@^2.0.0:
   resolved "https://registry.npmjs.org/astral-regex/-/astral-regex-2.0.0.tgz"
   integrity sha512-Z7tMw1ytTXt5jqMcOP+OQteU1VuNK9Y02uuJtKQ1Sv69jXQKKg5cibLwGJow8yzZP+eAc18EmLGPal0bp36rvQ==
 
+async_hooks@^1.0.0:
+  version "1.0.0"
+  resolved "https://registry.yarnpkg.com/async_hooks/-/async_hooks-1.0.0.tgz#815f5e861fe73f64eb29fd942c32e95c8064052f"
+  integrity sha512-t4BSJgx48V3e7U6Ll3/WOUNmxIRPzmPdxVfgbyzcnRItEnn4iKp4F//b0sV3L9hzbdr5qxWdNWzOF7t+rjYSfA==
+
 asynckit@^0.4.0:
   version "0.4.0"
   resolved "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz"
@@ -1012,6 +1439,11 @@ chokidar@3.5.3, chokidar@^3.5.1, chokidar@^3.5.2:
   optionalDependencies:
     fsevents "~2.3.2"
 
+cjs-module-lexer@^1.2.2:
+  version "1.4.1"
+  resolved "https://registry.yarnpkg.com/cjs-module-lexer/-/cjs-module-lexer-1.4.1.tgz#707413784dbb3a72aa11c2f2b042a0bef4004170"
+  integrity sha512-cuSVIHi9/9E/+821Qjdvngor+xpnlwnuwIyZOaLmHBVdXL+gP+I6QQB9VkO7RI77YIcTV+S1W9AreJ5eN63JBA==
+
 clean-stack@^2.0.0:
   version "2.2.0"
   resolved "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz"
@@ -1184,6 +1616,13 @@ debug@^3.2.7:
   dependencies:
     ms "^2.1.1"
 
+debug@^4.3.5:
+  version "4.3.7"
+  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
+  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
+  dependencies:
+    ms "^2.1.3"
+
 decamelize@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/decamelize/-/decamelize-4.0.0.tgz"
@@ -1263,6 +1702,11 @@ detect-libc@^2.0.1:
   resolved "https://registry.npmjs.org/detect-libc/-/detect-libc-2.0.2.tgz"
   integrity sha512-UX6sGumvvqSaXgdKGUsgZWqcUyIXZ/vZTrlRT/iobiKhGL0zL4d3osHj3uqllWJK+i+sixDS/3COVEOFbupFyw==
 
+detect-libc@^2.0.2:
+  version "2.0.3"
+  resolved "https://registry.yarnpkg.com/detect-libc/-/detect-libc-2.0.3.tgz#f0cd503b40f9939b894697d19ad50895e30cf700"
+  integrity sha512-bwy0MGW55bG41VqxxypOsdSdGqLwXPI/focwgTYCFMbdUiBAxLg9CFzG08sz2aqzknwiX7Hkl0bQENjg8iLByw==
+
 diff@5.0.0:
   version "5.0.0"
   resolved "https://registry.npmjs.org/diff/-/diff-5.0.0.tgz"
@@ -2167,6 +2611,16 @@ import-fresh@^3.2.1:
     parent-module "^1.0.0"
     resolve-from "^4.0.0"
 
+import-in-the-middle@^1.11.0, import-in-the-middle@^1.8.1:
+  version "1.11.2"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.2.tgz#dd848e72b63ca6cd7c34df8b8d97fc9baee6174f"
+  integrity sha512-gK6Rr6EykBcc6cVWRSBR5TWf8nn6hZMYSRYqCcHa0l0d1fPK7JSYo6+Mlmck76jIX9aL/IZ71c06U2VpFwl1zA==
+  dependencies:
+    acorn "^8.8.2"
+    acorn-import-attributes "^1.9.5"
+    cjs-module-lexer "^1.2.2"
+    module-details-from-path "^1.0.3"
+
 imurmurhash@^0.1.4:
   version "0.1.4"
   resolved "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz"
@@ -2802,6 +3256,11 @@ mocha@^10.2.0:
     yargs-parser "20.2.4"
     yargs-unparser "2.0.0"
 
+module-details-from-path@^1.0.3:
+  version "1.0.3"
+  resolved "https://registry.yarnpkg.com/module-details-from-path/-/module-details-from-path-1.0.3.tgz#114c949673e2a8a35e9d35788527aa37b679da2b"
+  integrity sha512-ySViT69/76t8VhE1xXHK6Ch4NcDd26gx0MzKXLO+F7NOtnqH68d9zF94nT8ZWSxXh8ELOERsnJO/sWt1xZYw5A==
+
 morgan@^1.10.0:
   version "1.10.0"
   resolved "https://registry.npmjs.org/morgan/-/morgan-1.10.0.tgz"
@@ -2828,7 +3287,7 @@ ms@2.1.2:
   resolved "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz"
   integrity sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w==
 
-ms@2.1.3, ms@^2.1.1:
+ms@2.1.3, ms@^2.1.1, ms@^2.1.3:
   version "2.1.3"
   resolved "https://registry.npmjs.org/ms/-/ms-2.1.3.tgz"
   integrity sha512-6FlzubTLZG3J2a/NVCAleEhjzq5oxgHyaCU9yYXvcLsvoVaHJq/s5xXI6/XXP6tz7R9xAOtHnSO/tXtF3WRTlA==
@@ -2853,6 +3312,13 @@ nice-try@^1.0.4:
   resolved "https://registry.npmjs.org/nice-try/-/nice-try-1.0.5.tgz"
   integrity sha512-1nh45deeb5olNY7eX82BkPO7SSxR5SSYJiPTrTdFUVYwAl8CKMA5N9PjTYkHiRjisVcxcQ1HXdLhx2qxxJzLNQ==
 
+node-abi@^3.61.0:
+  version "3.68.0"
+  resolved "https://registry.yarnpkg.com/node-abi/-/node-abi-3.68.0.tgz#8f37fb02ecf4f43ebe694090dcb52e0c4cc4ba25"
+  integrity sha512-7vbj10trelExNjFSBm5kTvZXXa7pZyKWx9RCKIyqe6I9Ev3IzGpQoqBP3a+cOdxY+pWj6VkP28n/2wWysBHD/A==
+  dependencies:
+    semver "^7.3.5"
+
 node-domexception@^1.0.0:
   version "1.0.0"
   resolved "https://registry.yarnpkg.com/node-domexception/-/node-domexception-1.0.0.tgz#6888db46a1f71c0b76b3f7555016b63fe64766e5"
@@ -3210,7 +3676,7 @@ pg-protocol@*, pg-protocol@^1.6.0:
   resolved "https://registry.npmjs.org/pg-protocol/-/pg-protocol-1.6.0.tgz"
   integrity sha512-M+PDm637OY5WM307051+bsDia5Xej6d9IR4GwJse1qA1DIhiKlksvrneZOYQq42OM+spubpcNYEo2FcKQrDk+Q==
 
-pg-types@^2.1.0:
+pg-types@^2.1.0, pg-types@^2.2.0:
   version "2.2.0"
   resolved "https://registry.npmjs.org/pg-types/-/pg-types-2.2.0.tgz"
   integrity sha512-qTAAlrEsl8s4OiEQY69wDvcMIdQN6wdz5ojQiOy6YRMuynxenON0O5oCpJI6lshc6scgAY8qvJ2On/p+CXY0GA==
@@ -3570,12 +4036,21 @@ require-directory@^2.1.1:
   resolved "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz"
   integrity sha512-fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q==
 
+require-in-the-middle@^7.1.1:
+  version "7.4.0"
+  resolved "https://registry.yarnpkg.com/require-in-the-middle/-/require-in-the-middle-7.4.0.tgz#606977820d4b5f9be75e5a108ce34cfed25b3bb4"
+  integrity sha512-X34iHADNbNDfr6OTStIAHWSAvvKQRYgLO6duASaVf7J2VA3lvmNYboAHOuLC2huav1IwgZJtyEcJCKVzFxOSMQ==
+  dependencies:
+    debug "^4.3.5"
+    module-details-from-path "^1.0.3"
+    resolve "^1.22.8"
+
 resolve-from@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/resolve-from/-/resolve-from-4.0.0.tgz"
   integrity sha512-pb/MYmXstAkysRFx8piNI1tGFNQIFA3vkE3Gq4EuA1dF6gHp/+vgZqsCGJapvy8N3Q+4o7FwvquPJcnZ7RYy4g==
 
-resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4:
+resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4, resolve@^1.22.8:
   version "1.22.8"
   resolved "https://registry.npmjs.org/resolve/-/resolve-1.22.8.tgz"
   integrity sha512-oKWePCxqpd6FlLvGV1VU0x7bkPmmCNolxzjMf4NczoDnQcIWrAF+cPtZn5i6n+RfD2d9i0tzpKnG6Yk168yIyw==
@@ -3701,6 +4176,11 @@ semver@^6.3.1:
   resolved "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz"
   integrity sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==
 
+semver@^7.3.5, semver@^7.5.2:
+  version "7.6.3"
+  resolved "https://registry.yarnpkg.com/semver/-/semver-7.6.3.tgz#980f7b5550bc175fb4dc09403085627f9eb33143"
+  integrity sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==
+
 semver@^7.5.3, semver@^7.5.4:
   version "7.5.4"
   resolved "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz"
@@ -3803,6 +4283,11 @@ shell-quote@^1.6.1:
   resolved "https://registry.npmjs.org/shell-quote/-/shell-quote-1.8.1.tgz"
   integrity sha512-6j1W9l1iAs/4xYBI1SYOVZyFcCis9b4KCLQ8fgAGG07QvzaRLVVRQvAy85yNmmZSjYjg4MWh4gNvlPujU/5LpA==
 
+shimmer@^1.2.1:
+  version "1.2.1"
+  resolved "https://registry.yarnpkg.com/shimmer/-/shimmer-1.2.1.tgz#610859f7de327b587efebf501fb43117f9aff337"
+  integrity sha512-sQTKC1Re/rM6XyFM6fIAGHRPVGvyXfgzIDvzoq608vM+jeyVD0Tu1E6Np0Kc2zAIFWIj963V2800iF/9LPieQw==
+
 side-channel@^1.0.4:
   version "1.0.4"
   resolved "https://registry.npmjs.org/side-channel/-/side-channel-1.0.4.tgz"
diff --git a/desci-server/src/controllers/nodes/documents.ts b/desci-server/src/controllers/nodes/documents.ts
index be54cefde..f8715a5c4 100644
--- a/desci-server/src/controllers/nodes/documents.ts
+++ b/desci-server/src/controllers/nodes/documents.ts
@@ -1,14 +1,16 @@
 import { DocumentId } from '@automerge/automerge-repo';
+import { ManifestActions } from '@desci-labs/desci-models';
 import { Response } from 'express';
-import { ManifestActions } from "@desci-labs/desci-models";
+
 import { prisma } from '../../client.js';
-import { logger } from '../../logger.js';
+import { logger as parentLogger } from '../../logger.js';
 import { RequestWithNode } from '../../middleware/authorisation.js';
 import { NodeUuid } from '../../services/manifestRepo.js';
 import repoService from '../../services/repoService.js';
 import { getLatestManifest } from '../data/utils.js';
 
 export const getNodeDocument = async function (req: RequestWithNode, response: Response) {
+  const logger = parentLogger.child({ module: 'getNodeDocument' });
   try {
     logger.info({ userId: req.user.id, uuid: req.node.uuid }, '[START] GetNodeDocument');
 
@@ -45,8 +47,8 @@ export const getNodeDocument = async function (req: RequestWithNode, response: R
 };
 
 export const dispatchDocumentChange = async function (req: RequestWithNode, response: Response) {
+  const logger = parentLogger.child({ module: 'dispatchDocumentChange', userId: req.user.id, uuid: req.node.uuid });
   try {
-    logger.info({ userId: req.user.id, uuid: req.node.uuid }, '[START] GetNodeDocument');
     const node = req.node;
     const actions = req.body.actions as ManifestActions[];
 
diff --git a/desci-server/src/controllers/nodes/draftCreate.ts b/desci-server/src/controllers/nodes/draftCreate.ts
index ec6691bcb..cc013a0a0 100755
--- a/desci-server/src/controllers/nodes/draftCreate.ts
+++ b/desci-server/src/controllers/nodes/draftCreate.ts
@@ -1,4 +1,4 @@
-import { DocumentId } from '@automerge/automerge-repo';
+// import { DocumentId } from '@automerge/automerge-repo';
 import {
   ExternalLinkComponent,
   PdfComponent,
@@ -12,7 +12,7 @@ import { Request, Response, NextFunction } from 'express';
 
 import { prisma } from '../../client.js';
 import { logger as parentLogger } from '../../logger.js';
-import { getDataUsageForUserBytes, hasAvailableDataUsageForUpload } from '../../services/dataService.js';
+import { hasAvailableDataUsageForUpload } from '../../services/dataService.js';
 import {
   addBufferToIpfs,
   downloadFilesAndMakeManifest,
@@ -76,7 +76,7 @@ export const draftCreate = async (req: Request, res: Response, next: NextFunctio
       },
     });
 
-    const dataConsumptionBytes = await getDataUsageForUserBytes(owner);
+    // const dataConsumptionBytes = await getDataUsageForUserBytes(owner);
 
     const uploadSizeBytes = files.map((f) => f.size).reduce((total, size) => total + size, 0);
 
@@ -267,7 +267,7 @@ export const draftAddComponent = async (req: Request, res: Response, next: NextF
         subtype: componentSubtype,
         payload: {
           url: componentUrl,
-          path: DRIVE_NODE_ROOT_PATH + `/${name}`
+          path: DRIVE_NODE_ROOT_PATH + `/${name}`,
         },
       };
       manifestParsed.components.push(linkComponent);
diff --git a/desci-server/src/services/repoService.ts b/desci-server/src/services/repoService.ts
index 9a6cdcb7c..ea29138ca 100644
--- a/desci-server/src/services/repoService.ts
+++ b/desci-server/src/services/repoService.ts
@@ -2,9 +2,8 @@ import { DocumentId } from '@automerge/automerge-repo';
 import { ResearchObjectV1, ManifestActions } from '@desci-labs/desci-models';
 import axios, { AxiosInstance } from 'axios';
 
-import { logger as parentLogger } from '../logger.js';
+import { als, logger as parentLogger } from '../logger.js';
 import { ResearchObjectDocument } from '../types/documents.js';
-import { ensureUuidEndsWithDot } from '../utils.js';
 
 import { NodeUuid } from './manifestRepo.js';
 
@@ -38,6 +37,11 @@ class RepoService {
     const response = await this.#client.post<{ ok: boolean; document: ResearchObjectDocument }>(
       `${this.baseUrl}/v1/nodes/documents/dispatch`,
       arg,
+      {
+        headers: {
+          'x-api-remote-traceid': (als.getStore() as any)?.traceId,
+        },
+      },
     );
     logger.info({ arg, ok: response.data.ok }, 'Disatch Changes Response');
     if (response.status === 200 && response.data.ok) {
@@ -54,6 +58,11 @@ class RepoService {
       const response = await this.#client.post<{ ok: boolean; document: ResearchObjectDocument }>(
         `${this.baseUrl}/v1/nodes/documents/actions`,
         arg,
+        {
+          headers: {
+            'x-api-remote-traceid': (als.getStore() as any)?.traceId,
+          },
+        },
       );
       logger.info({ arg, response: response.data }, 'Disatch Actions Response');
       if (response.status === 200 && response.data.ok) {
@@ -71,7 +80,11 @@ class RepoService {
     try {
       const response = await this.#client.post<
         ApiResponse<{ documentId: DocumentId; document: ResearchObjectDocument }>
-      >(`${this.baseUrl}/v1/nodes/documents`, arg);
+      >(`${this.baseUrl}/v1/nodes/documents`, arg, {
+        headers: {
+          'x-api-remote-traceid': (als.getStore() as any)?.traceId,
+        },
+      });
       logger.info({ response: response.data }, 'Create Draft Response');
       if (response.status === 200 && response.data.ok) {
         return response.data;
@@ -93,6 +106,11 @@ class RepoService {
     try {
       const response = await this.#client.get<ApiResponse<{ document: ResearchObjectDocument }>>(
         `${this.baseUrl}/v1/nodes/documents/draft/${arg.uuid}`,
+        {
+          headers: {
+            'x-api-remote-traceid': (als.getStore() as any)?.traceId,
+          },
+        },
       );
       if (response.status === 200 && response.data.ok) {
         return response.data.document;
@@ -104,6 +122,7 @@ class RepoService {
       return null;
     }
   }
+
   async getDraftManifest(uuid: NodeUuid) {
     logger.info({ uuid }, 'Retrieve Draft Document');
     // try {} catch (err) {}

From b30850ce783eb5e85f382c5b0270eac2bef880a7 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Mon, 7 Oct 2024 15:33:20 -0500
Subject: [PATCH 66/81] repo sentry config

---
 desci-repo/src/server.ts   | 11 +++++++----
 desci-server/src/server.ts | 11 ++++++++---
 2 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 354e960cb..5418f19ff 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -71,6 +71,7 @@ class AppServer {
 
   constructor() {
     this.app = express();
+
     this.#initSerialiser();
 
     this.app.use(function (req, res, next) {
@@ -106,8 +107,6 @@ class AppServer {
       });
     });
 
-    this.#initTelemetry();
-
     this.app.use(bodyParser.json({ limit: '100mb' }));
     this.app.use(bodyParser.urlencoded({ extended: false }));
 
@@ -124,6 +123,9 @@ class AppServer {
       res.status(200).json({ id: serverUuid });
     });
 
+    // init telementry
+    this.#initTelemetry();
+
     this.port = process.env.PORT ? parseInt(process.env.PORT) : 5484;
     logger.info(`Server starting on port ${this.port}`);
     this.server = this.app.listen(this.port, () => {
@@ -212,9 +214,10 @@ class AppServer {
         profilesSampleRate: 1.0,
       });
       // this.app.use(Sentry.Handlers.requestHandler());
-      // this.app.use(Sentry.Handlers.tracingHandler());
-      // this.app.use(Sentry.Handlers.errorHandler());
+      Sentry.addIntegration(Sentry.expressIntegration);
       Sentry.setupExpressErrorHandler(this.app);
+      // this.app.use(Sentry.expressIntegration);
+      // this.app.use(Sentry.expressErrorHandler);
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
     }
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 172964d54..1f77b29d7 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -67,6 +67,7 @@ class AppServer {
 
   constructor() {
     this.app = express();
+
     this.#initSerialiser();
 
     this.app.use(function (req, res, next) {
@@ -113,9 +114,15 @@ class AppServer {
       });
     });
 
-    this.#attachProxies();
+    // attach all app routes
+    this.#attachRouteHandlers();
+
+    // init telementry
     this.#initTelemetry();
 
+    // attach proxy routes
+    this.#attachProxies();
+
     this.app.use(helmet());
     this.app.use(bodyParser.json({ limit: '100mb' }));
     this.app.use(bodyParser.urlencoded({ extended: false }));
@@ -123,8 +130,6 @@ class AppServer {
     this.app.use(cookieParser());
     this.app.set('trust proxy', 2); // detect AWS ELB IP + cloudflare
 
-    this.#attachRouteHandlers();
-
     // catch 404 errors and forward to error handler
     this.app.use((_req, _res, next) => next(new NotFoundError()));
     this.app.use(errorHandler);

From 57bfe5fc056722dd20b24f880ec8ef9d657edc03 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Mon, 7 Oct 2024 16:37:50 -0500
Subject: [PATCH 67/81] fix: attach routes after necessary middlewares

---
 .../src/routes/v1/admin/communities/index.ts       |  4 ++--
 desci-server/src/server.ts                         | 14 +++++++-------
 docker-compose.test.yml                            |  1 -
 3 files changed, 9 insertions(+), 10 deletions(-)

diff --git a/desci-server/src/routes/v1/admin/communities/index.ts b/desci-server/src/routes/v1/admin/communities/index.ts
index d6acaa0bb..e96b9d210 100644
--- a/desci-server/src/routes/v1/admin/communities/index.ts
+++ b/desci-server/src/routes/v1/admin/communities/index.ts
@@ -72,8 +72,8 @@ const wrappedHandler = (req: Request, res: Response, next: NextFunction) => {
 
 const sanitizeBody = async (req: Request, _res: Response, next: NextFunction) => {
   logger.info({ body: req.body }, 'sanitizeBody');
-  req.body?.keywords ? (req.body.keywords = JSON.parse(req.body.keywords)) : null;
-  req.body?.links ? (req.body.links = JSON.parse(req.body.links)) : null;
+  typeof req.body?.keywords === 'string' ? (req.body.keywords = JSON.parse(req.body.keywords)) : null;
+  typeof req.body?.links === 'string' ? (req.body.links = JSON.parse(req.body.links)) : null;
   next();
 };
 
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 1f77b29d7..276ad56ef 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -114,6 +114,13 @@ class AppServer {
       });
     });
 
+    this.app.use(helmet());
+    this.app.use(bodyParser.json({ limit: '100mb' }));
+    this.app.use(bodyParser.urlencoded({ extended: false }));
+
+    this.app.use(cookieParser());
+    this.app.set('trust proxy', 2); // detect AWS ELB IP + cloudflare
+
     // attach all app routes
     this.#attachRouteHandlers();
 
@@ -123,13 +130,6 @@ class AppServer {
     // attach proxy routes
     this.#attachProxies();
 
-    this.app.use(helmet());
-    this.app.use(bodyParser.json({ limit: '100mb' }));
-    this.app.use(bodyParser.urlencoded({ extended: false }));
-
-    this.app.use(cookieParser());
-    this.app.set('trust proxy', 2); // detect AWS ELB IP + cloudflare
-
     // catch 404 errors and forward to error handler
     this.app.use((_req, _res, next) => next(new NotFoundError()));
     this.app.use(errorHandler);
diff --git a/docker-compose.test.yml b/docker-compose.test.yml
index accf5c451..46036157a 100755
--- a/docker-compose.test.yml
+++ b/docker-compose.test.yml
@@ -1,4 +1,3 @@
-version: "3"
 name: test
 services:
   nodes_test_db:

From ac6b4e638129891b34a0102d94d822e87d0f1d2b Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 05:26:21 -0500
Subject: [PATCH 68/81] init sentry before import

---
 desci-repo/src/server.ts | 61 +++++++++++++++++++++++++---------------
 package-lock.json        |  6 ----
 2 files changed, 38 insertions(+), 29 deletions(-)
 delete mode 100644 package-lock.json

diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 5418f19ff..08ea4f76c 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,14 +1,36 @@
 // @ts-check
-import express from 'express';
-import type { Express, Request } from 'express';
-import cors from 'cors';
-import bodyParser from 'body-parser';
-
 import 'dotenv/config';
 import 'reflect-metadata';
 import path from 'path';
 
 import * as Sentry from '@sentry/node';
+import { als, logger } from './logger.js';
+
+const ENABLE_TELEMETRY = true; // process.env.NODE_ENV === 'production';
+const IS_DEV = !ENABLE_TELEMETRY;
+
+if (ENABLE_TELEMETRY) {
+  logger.info('[DeSci Repo] Telemetry enabled');
+  Sentry.init({
+    dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
+    release: 'desci-nodes-repo@' + process.env.npm_package_version,
+    integrations: [nodeProfilingIntegration()],
+    // Set tracesSampleRate to 1.0 to capture 100%
+    // of transactions for performance monitoring.
+    // We recommend adjusting this value in production
+    tracesSampleRate: 1.0,
+    profilesSampleRate: 1.0,
+  });
+  // Sentry.setupExpressErrorHandler(this.app);
+} else {
+  logger.info('[DeSci Repo] Telemetry disabled');
+}
+
+import express from 'express';
+import type { Express, Request } from 'express';
+import cors from 'cors';
+import bodyParser from 'body-parser';
+
 import type { Server as HttpServer } from 'http';
 import { v4 } from 'uuid';
 
@@ -17,7 +39,7 @@ import routes from './routes/index.js';
 
 import { fileURLToPath } from 'url';
 import { socket as wsSocket } from './repo.js';
-import { als, logger } from './logger.js';
+
 import { extractAuthToken, extractUserFromToken } from './middleware/permissions.js';
 import { pinoHttp } from 'pino-http';
 import { RequestWithUser } from './middleware/guard.js';
@@ -26,9 +48,6 @@ import { nodeProfilingIntegration } from '@sentry/profiling-node';
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
 
-const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
-const IS_DEV = !ENABLE_TELEMETRY;
-
 const serverUuid = v4();
 
 const allowlist = [
@@ -203,21 +222,17 @@ class AppServer {
   #initTelemetry() {
     if (ENABLE_TELEMETRY) {
       logger.info('[DeSci Repo] Telemetry enabled');
-      Sentry.init({
-        dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
-        release: 'desci-nodes-repo@' + process.env.npm_package_version,
-        integrations: [nodeProfilingIntegration()],
-        // Set tracesSampleRate to 1.0 to capture 100%
-        // of transactions for performance monitoring.
-        // We recommend adjusting this value in production
-        tracesSampleRate: 1.0,
-        profilesSampleRate: 1.0,
-      });
-      // this.app.use(Sentry.Handlers.requestHandler());
-      Sentry.addIntegration(Sentry.expressIntegration);
+      // Sentry.init({
+      //   dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
+      //   release: 'desci-nodes-repo@' + process.env.npm_package_version,
+      //   integrations: [nodeProfilingIntegration()],
+      //   // Set tracesSampleRate to 1.0 to capture 100%
+      //   // of transactions for performance monitoring.
+      //   // We recommend adjusting this value in production
+      //   tracesSampleRate: 1.0,
+      //   profilesSampleRate: 1.0,
+      // });
       Sentry.setupExpressErrorHandler(this.app);
-      // this.app.use(Sentry.expressIntegration);
-      // this.app.use(Sentry.expressErrorHandler);
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
     }
diff --git a/package-lock.json b/package-lock.json
deleted file mode 100644
index 29ca7076e..000000000
--- a/package-lock.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
-  "name": "nodes",
-  "lockfileVersion": 3,
-  "requires": true,
-  "packages": {}
-}

From 1ac4c7ba33e79f739be71df2915f18bf19cb2805 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 06:11:15 -0500
Subject: [PATCH 69/81] test import order

---
 desci-repo/src/index.ts      |  1 -
 desci-repo/src/instrument.ts | 17 ++++++++++++++
 desci-repo/src/server.ts     | 43 +++++++-----------------------------
 desci-server/src/server.ts   |  4 ++--
 4 files changed, 27 insertions(+), 38 deletions(-)
 create mode 100644 desci-repo/src/instrument.ts

diff --git a/desci-repo/src/index.ts b/desci-repo/src/index.ts
index 2db1093ea..f27c2b6d9 100644
--- a/desci-repo/src/index.ts
+++ b/desci-repo/src/index.ts
@@ -1,6 +1,5 @@
 import { logger } from './logger.js';
 import { server } from './server.js';
-// import * as db from './dbs/index.js';
 
 server.ready().then(async (_) => {
   logger.info('server is ready');
diff --git a/desci-repo/src/instrument.ts b/desci-repo/src/instrument.ts
new file mode 100644
index 000000000..fb4a64602
--- /dev/null
+++ b/desci-repo/src/instrument.ts
@@ -0,0 +1,17 @@
+import * as Sentry from '@sentry/node';
+import { nodeProfilingIntegration } from '@sentry/profiling-node';
+
+const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
+
+if (ENABLE_TELEMETRY) {
+  Sentry.init({
+    dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
+    release: 'desci-nodes-repo@' + process.env.npm_package_version,
+    integrations: [nodeProfilingIntegration()],
+    // Set tracesSampleRate to 1.0 to capture 100%
+    // of transactions for performance monitoring.
+    // We recommend adjusting this value in production
+    tracesSampleRate: 1.0,
+    profilesSampleRate: 1.0,
+  });
+}
diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 08ea4f76c..9072b7f48 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,30 +1,13 @@
-// @ts-check
-import 'dotenv/config';
-import 'reflect-metadata';
-import path from 'path';
-
+import './instrument.js';
 import * as Sentry from '@sentry/node';
-import { als, logger } from './logger.js';
 
-const ENABLE_TELEMETRY = true; // process.env.NODE_ENV === 'production';
+const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
 const IS_DEV = !ENABLE_TELEMETRY;
 
-if (ENABLE_TELEMETRY) {
-  logger.info('[DeSci Repo] Telemetry enabled');
-  Sentry.init({
-    dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
-    release: 'desci-nodes-repo@' + process.env.npm_package_version,
-    integrations: [nodeProfilingIntegration()],
-    // Set tracesSampleRate to 1.0 to capture 100%
-    // of transactions for performance monitoring.
-    // We recommend adjusting this value in production
-    tracesSampleRate: 1.0,
-    profilesSampleRate: 1.0,
-  });
-  // Sentry.setupExpressErrorHandler(this.app);
-} else {
-  logger.info('[DeSci Repo] Telemetry disabled');
-}
+// @ts-check
+import 'dotenv/config';
+import 'reflect-metadata';
+import path from 'path';
 
 import express from 'express';
 import type { Express, Request } from 'express';
@@ -34,6 +17,7 @@ import bodyParser from 'body-parser';
 import type { Server as HttpServer } from 'http';
 import { v4 } from 'uuid';
 
+import { als, logger } from './logger.js';
 import routes from './routes/index.js';
 // import SocketServer from './wsServer.js';
 
@@ -43,7 +27,6 @@ import { socket as wsSocket } from './repo.js';
 import { extractAuthToken, extractUserFromToken } from './middleware/permissions.js';
 import { pinoHttp } from 'pino-http';
 import { RequestWithUser } from './middleware/guard.js';
-import { nodeProfilingIntegration } from '@sentry/profiling-node';
 
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
@@ -219,19 +202,9 @@ class AppServer {
     );
   }
 
-  #initTelemetry() {
+  async #initTelemetry() {
     if (ENABLE_TELEMETRY) {
       logger.info('[DeSci Repo] Telemetry enabled');
-      // Sentry.init({
-      //   dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
-      //   release: 'desci-nodes-repo@' + process.env.npm_package_version,
-      //   integrations: [nodeProfilingIntegration()],
-      //   // Set tracesSampleRate to 1.0 to capture 100%
-      //   // of transactions for performance monitoring.
-      //   // We recommend adjusting this value in production
-      //   tracesSampleRate: 1.0,
-      //   profilesSampleRate: 1.0,
-      // });
       Sentry.setupExpressErrorHandler(this.app);
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 3d32484b9..5a4569ac3 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -8,7 +8,7 @@ import type { Server as HttpServer } from 'http';
 
 import * as Sentry from '@sentry/node';
 import { nodeProfilingIntegration } from '@sentry/profiling-node';
-import * as Tracing from '@sentry/tracing';
+// import * as Tracing from '@sentry/tracing';
 import bodyParser from 'body-parser';
 import cookieParser from 'cookie-parser';
 import express from 'express';
@@ -193,7 +193,7 @@ class AppServer {
       pinoHttp({
         logger,
         autoLogging: {
-          ignore: (req) => req.url === "/readyz"
+          ignore: (req) => req.url === '/readyz',
         },
         customProps: (req: RequestWithUser, res) => ({
           userAuth: req.userAuth,

From e0a153414282f228abb538a931381767e808a83b Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 07:21:32 -0500
Subject: [PATCH 70/81] downgrade

---
 desci-repo/package.json      |   4 +-
 desci-repo/src/instrument.ts |  17 -
 desci-repo/src/server.ts     |  14 +-
 desci-repo/yarn.lock         | 582 ++++++-----------------------------
 desci-server/package.json    |   4 +-
 desci-server/yarn.lock       |  64 ++--
 6 files changed, 134 insertions(+), 551 deletions(-)
 delete mode 100644 desci-repo/src/instrument.ts

diff --git a/desci-repo/package.json b/desci-repo/package.json
index 15fd4ccd0..4ee7e0a47 100644
--- a/desci-repo/package.json
+++ b/desci-repo/package.json
@@ -69,10 +69,8 @@
   },
   "dependencies": {
     "@desci-labs/desci-models": "0.2.11",
-    "@sentry/node": "^8.29.0",
-    "@sentry/profiling-node": "^8.32.0",
+    "@sentry/node": "7.84.0",
     "@sentry/tracing": "^7.84.0",
-    "async_hooks": "^1.0.0",
     "axios": "^1.6.2",
     "cors": "^2.8.5",
     "deep-equal": "^2.2.3",
diff --git a/desci-repo/src/instrument.ts b/desci-repo/src/instrument.ts
deleted file mode 100644
index fb4a64602..000000000
--- a/desci-repo/src/instrument.ts
+++ /dev/null
@@ -1,17 +0,0 @@
-import * as Sentry from '@sentry/node';
-import { nodeProfilingIntegration } from '@sentry/profiling-node';
-
-const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
-
-if (ENABLE_TELEMETRY) {
-  Sentry.init({
-    dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
-    release: 'desci-nodes-repo@' + process.env.npm_package_version,
-    integrations: [nodeProfilingIntegration()],
-    // Set tracesSampleRate to 1.0 to capture 100%
-    // of transactions for performance monitoring.
-    // We recommend adjusting this value in production
-    tracesSampleRate: 1.0,
-    profilesSampleRate: 1.0,
-  });
-}
diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 9072b7f48..f06957745 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,4 +1,3 @@
-import './instrument.js';
 import * as Sentry from '@sentry/node';
 
 const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
@@ -205,7 +204,18 @@ class AppServer {
   async #initTelemetry() {
     if (ENABLE_TELEMETRY) {
       logger.info('[DeSci Repo] Telemetry enabled');
-      Sentry.setupExpressErrorHandler(this.app);
+      Sentry.init({
+        dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
+        release: 'desci-nodes-repo@' + process.env.npm_package_version,
+        integrations: [],
+        // Set tracesSampleRate to 1.0 to capture 100%
+        // of transactions for performance monitoring.
+        // We recommend adjusting this value in production
+        tracesSampleRate: 1.0,
+      });
+      this.app.use(Sentry.Handlers.requestHandler());
+      this.app.use(Sentry.Handlers.tracingHandler());
+      this.app.use(Sentry.Handlers.errorHandler());
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
     }
diff --git a/desci-repo/yarn.lock b/desci-repo/yarn.lock
index f3c217550..da3a880c0 100644
--- a/desci-repo/yarn.lock
+++ b/desci-repo/yarn.lock
@@ -260,293 +260,6 @@
     "@nodelib/fs.scandir" "2.1.5"
     fastq "^1.6.0"
 
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-  integrity sha512-olWQldtvbK4v22ymrKLbIcBi9L2SpMO84sCPY54IVsJhP9fRsxJT194C/AVaAuJzLE30EdhhM1VmvVYR7az+cw==
-  dependencies:
-    "@opentelemetry/core" "1.26.0"
-    "@opentelemetry/resources" "1.26.0"
-    "@opentelemetry/semantic-conventions" "1.27.0"
-
-"@opentelemetry/semantic-conventions@1.27.0", "@opentelemetry/semantic-conventions@^1.27.0":
-  version "1.27.0"
-  resolved "https://registry.yarnpkg.com/@opentelemetry/semantic-conventions/-/semantic-conventions-1.27.0.tgz#1a857dcc95a5ab30122e04417148211e6f945e6c"
-  integrity sha512-sAay1RrB+ONOem0OZanAR1ZI/k7yDpnOQSQmTMuGImUQb2y8EbSaCJ94FQluM74xoU03vlb2d2U90hZluL6nQg==
-
-"@opentelemetry/sql-common@^0.40.1":
-  version "0.40.1"
-  resolved "https://registry.yarnpkg.com/@opentelemetry/sql-common/-/sql-common-0.40.1.tgz#93fbc48d8017449f5b3c3274f2268a08af2b83b6"
-  integrity sha512-nSDlnHSqzC3pXn/wZEZVLuAuJ1MYMXPBwtv2qAbCa3847SaHItdE7SzUq/Jtb0KZmh1zfAbNi3AAMjztTT4Ugg==
-  dependencies:
-    "@opentelemetry/core" "^1.1.0"
-
 "@pkgjs/parseargs@^0.11.0":
   version "0.11.0"
   resolved "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz"
@@ -557,14 +270,14 @@
   resolved "https://registry.npmjs.org/@pkgr/core/-/core-0.1.1.tgz"
   integrity sha512-cq8o4cWH0ibXh9VGi5P20Tu9XF/0fFXl9EUinr9QfTM7a7p0oTA4iJRCQWppXR1Pg8dSM0UCItCkPwsk9qWWYA==
 
-"@prisma/instrumentation@5.19.1":
-  version "5.19.1"
-  resolved "https://registry.yarnpkg.com/@prisma/instrumentation/-/instrumentation-5.19.1.tgz#146319cf85f22b7a43296f0f40cfeac55516e66e"
-  integrity sha512-VLnzMQq7CWroL5AeaW0Py2huiNKeoMfCH3SUxstdzPrlWQi6UQ9UrfcbUkNHlVFqOMacqy8X/8YtE0kuKDpD9w==
+"@sentry-internal/tracing@7.84.0":
+  version "7.84.0"
+  resolved "https://registry.yarnpkg.com/@sentry-internal/tracing/-/tracing-7.84.0.tgz#430da253ee5b075be4ef57f20ea842c0208bc6b0"
+  integrity sha512-y9bGYA0OM6PEREfd+nk4UURZy29tpIw+7vQwpxWfEVs2fqq0/5TBFX/tKFb8AKUI9lVM8v0bcF0bNSCnuPQZHQ==
   dependencies:
-    "@opentelemetry/api" "^1.8"
-    "@opentelemetry/instrumentation" "^0.49 || ^0.50 || ^0.51 || ^0.52.0"
-    "@opentelemetry/sdk-trace-base" "^1.22"
+    "@sentry/core" "7.84.0"
+    "@sentry/types" "7.84.0"
+    "@sentry/utils" "7.84.0"
 
 "@sentry-internal/tracing@7.99.0":
   version "7.99.0"
@@ -575,6 +288,14 @@
     "@sentry/types" "7.99.0"
     "@sentry/utils" "7.99.0"
 
+"@sentry/core@7.84.0":
+  version "7.84.0"
+  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-7.84.0.tgz#01d33fc452044ffd8ea57b20f60304b9cfa2b9e1"
+  integrity sha512-tbuwunbBx2kSex15IHCqHDnrMfIlqPc6w/76fwkGqokz3oh9GSEGlLICwmBWL8AypWimUg13IDtFpD0TJTriWA==
+  dependencies:
+    "@sentry/types" "7.84.0"
+    "@sentry/utils" "7.84.0"
+
 "@sentry/core@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry/core/-/core-7.99.0.tgz"
@@ -583,75 +304,16 @@
     "@sentry/types" "7.99.0"
     "@sentry/utils" "7.99.0"
 
-"@sentry/core@8.33.1":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-8.33.1.tgz#dc59f73b93e6f78f15c897ac47e48008680d9c04"
-  integrity sha512-3SS41suXLFzxL3OQvTMZ6q92ZapELVq2l2SoWlZopcamWhog2Ru0dp2vkunq97kFHb2TzKRTlFH4+4gbT8SJug==
-  dependencies:
-    "@sentry/types" "8.33.1"
-    "@sentry/utils" "8.33.1"
-
-"@sentry/node@8.33.1", "@sentry/node@^8.29.0":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.33.1.tgz#1f45d13e59b86e9572e3f7764a8c9e5fe4ece0a7"
-  integrity sha512-0Xmlrl5nU5Bx6YybaIfztyOIiIXW5X64vcK0u94Sg4uHcDO7YvEbhflKjp669ds2I6ZQ/czqxnaAY8gM6P2SCA==
-  dependencies:
-    "@opentelemetry/api" "^1.9.0"
-    "@opentelemetry/context-async-hooks" "^1.25.1"
-    "@opentelemetry/core" "^1.25.1"
-    "@opentelemetry/instrumentation" "^0.53.0"
-    "@opentelemetry/instrumentation-amqplib" "^0.42.0"
-    "@opentelemetry/instrumentation-connect" "0.39.0"
-    "@opentelemetry/instrumentation-dataloader" "0.12.0"
-    "@opentelemetry/instrumentation-express" "0.42.0"
-    "@opentelemetry/instrumentation-fastify" "0.39.0"
-    "@opentelemetry/instrumentation-fs" "0.15.0"
-    "@opentelemetry/instrumentation-generic-pool" "0.39.0"
-    "@opentelemetry/instrumentation-graphql" "0.43.0"
-    "@opentelemetry/instrumentation-hapi" "0.41.0"
-    "@opentelemetry/instrumentation-http" "0.53.0"
-    "@opentelemetry/instrumentation-ioredis" "0.43.0"
-    "@opentelemetry/instrumentation-kafkajs" "0.3.0"
-    "@opentelemetry/instrumentation-koa" "0.43.0"
-    "@opentelemetry/instrumentation-lru-memoizer" "0.40.0"
-    "@opentelemetry/instrumentation-mongodb" "0.47.0"
-    "@opentelemetry/instrumentation-mongoose" "0.42.0"
-    "@opentelemetry/instrumentation-mysql" "0.41.0"
-    "@opentelemetry/instrumentation-mysql2" "0.41.0"
-    "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
-    "@opentelemetry/instrumentation-pg" "0.44.0"
-    "@opentelemetry/instrumentation-redis-4" "0.42.0"
-    "@opentelemetry/instrumentation-undici" "0.6.0"
-    "@opentelemetry/resources" "^1.26.0"
-    "@opentelemetry/sdk-trace-base" "^1.26.0"
-    "@opentelemetry/semantic-conventions" "^1.27.0"
-    "@prisma/instrumentation" "5.19.1"
-    "@sentry/core" "8.33.1"
-    "@sentry/opentelemetry" "8.33.1"
-    "@sentry/types" "8.33.1"
-    "@sentry/utils" "8.33.1"
-    import-in-the-middle "^1.11.0"
-
-"@sentry/opentelemetry@8.33.1":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.33.1.tgz#c7419a14ca00f8326a32673f19016098eaf9ff9a"
-  integrity sha512-D2aE2G0DUHLLnfbOXrTjiNJKAs/RZfOBJMidI4fC2AIwqCmrp55Aex4dRq4hxd8MPLR92Kt/ikHeJxlzWB15KA==
-  dependencies:
-    "@sentry/core" "8.33.1"
-    "@sentry/types" "8.33.1"
-    "@sentry/utils" "8.33.1"
-
-"@sentry/profiling-node@^8.32.0":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/profiling-node/-/profiling-node-8.33.1.tgz#13143360b7adf3d35d2e701191378cde0a6cb419"
-  integrity sha512-mpgcqT/yUyWiRKjHFJ6UMjNmMgAYK4aeaMQDL7P61y5mrVxfK9vRQbKuXdP9XiyiZe06j1PSskiBEA2S1cDVJQ==
-  dependencies:
-    "@sentry/core" "8.33.1"
-    "@sentry/node" "8.33.1"
-    "@sentry/types" "8.33.1"
-    "@sentry/utils" "8.33.1"
-    detect-libc "^2.0.2"
-    node-abi "^3.61.0"
+"@sentry/node@7.84.0":
+  version "7.84.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-7.84.0.tgz#c06167106796b2b83c0a9b52fa56f8ca820034ca"
+  integrity sha512-Xm3fIXT3TZOQi+6uQBavI8iOehD3PkY7v0y3hog0d4lQTH88vQK9BBsI+jZEq81Em+RG/u7vZNiFo6YMTnWF7Q==
+  dependencies:
+    "@sentry-internal/tracing" "7.84.0"
+    "@sentry/core" "7.84.0"
+    "@sentry/types" "7.84.0"
+    "@sentry/utils" "7.84.0"
+    https-proxy-agent "^5.0.0"
 
 "@sentry/tracing@^7.84.0":
   version "7.99.0"
@@ -660,15 +322,22 @@
   dependencies:
     "@sentry-internal/tracing" "7.99.0"
 
+"@sentry/types@7.84.0":
+  version "7.84.0"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-7.84.0.tgz#e8db86c36c61659c3b2558f0aa8b6a073a756117"
+  integrity sha512-VqGLIF3JOUrk7yIXjLXJvAORkZL1e3dDX0Q1okRehwyt/5CRE+mdUTeJZkBo9P9mBwgMyvtwklzOGGrzjb4eMA==
+
 "@sentry/types@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry/types/-/types-7.99.0.tgz"
   integrity sha512-94qwOw4w40sAs5mCmzcGyj8ZUu/KhnWnuMZARRq96k+SjRW/tHFAOlIdnFSrt3BLPvSOK7R3bVAskZQ0N4FTmA==
 
-"@sentry/types@8.33.1":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.33.1.tgz#3c519f974c3c3f3ea8b4e6f930b676f954c26f87"
-  integrity sha512-GjoAMvwtpIemoF/IiwZ7A60g4nQv3qwzR21GvJqDVUoKD0e8pv9OLX+HyXoUat4wEDGSuDUcUyUKD2G+od73QA==
+"@sentry/utils@7.84.0":
+  version "7.84.0"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-7.84.0.tgz#32861d922fa31e86dd2863a1d9dfc5a369e98952"
+  integrity sha512-qdUVuxnRBvaf05AU+28R+xYtZmi/Ymf8os3Njq9g4XuA+QEkZLbzmIpRK5W9Ja7vUtjOeg29Xgg43A8znde9LQ==
+  dependencies:
+    "@sentry/types" "7.84.0"
 
 "@sentry/utils@7.99.0":
   version "7.99.0"
@@ -677,13 +346,6 @@
   dependencies:
     "@sentry/types" "7.99.0"
 
-"@sentry/utils@8.33.1":
-  version "8.33.1"
-  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.33.1.tgz#8cfc56b7dbc27135028e77aa5d553b15f4ba0466"
-  integrity sha512-uzuYpiiJuFY3N4WNHMBWUQX5oNv2t/TbG0OHRp3Rr7yeu+HSfD542TIp9/gMZ+G0Cxd8AmVO3wkKIFbk0TL4Qg==
-  dependencies:
-    "@sentry/types" "8.33.1"
-
 "@tsconfig/node10@^1.0.7":
   version "1.0.9"
   resolved "https://registry.npmjs.org/@tsconfig/node10/-/node10-1.0.9.tgz"
@@ -724,13 +386,6 @@
   dependencies:
     "@types/node" "*"
 
-"@types/connect@3.4.36":
-  version "3.4.36"
-  resolved "https://registry.yarnpkg.com/@types/connect/-/connect-3.4.36.tgz#e511558c15a39cb29bd5357eebb57bd1459cd1ab"
-  integrity sha512-P63Zd/JUGq+PdrM1lv0Wv5SBYeA2+CORvbrXbngriYY0jzLUWfQMQQxOhjONEz/wlHOAxOdY7CY65rgQdTjq2w==
-  dependencies:
-    "@types/node" "*"
-
 "@types/cors@^2.8.17":
   version "2.8.17"
   resolved "https://registry.npmjs.org/@types/cors/-/cors-2.8.17.tgz"
@@ -802,13 +457,6 @@
   dependencies:
     "@types/node" "*"
 
-"@types/mysql@2.15.26":
-  version "2.15.26"
-  resolved "https://registry.yarnpkg.com/@types/mysql/-/mysql-2.15.26.tgz#f0de1484b9e2354d587e7d2bd17a873cc8300836"
-  integrity sha512-DSLCOXhkvfS5WNNPbfn2KdICAmk8lLc+/PNvnPnF7gOdMZCxopXduqv0OQ13y/yA/zXTSikZZqVgybUxOEg6YQ==
-  dependencies:
-    "@types/node" "*"
-
 "@types/node@*":
   version "20.11.13"
   resolved "https://registry.npmjs.org/@types/node/-/node-20.11.13.tgz"
@@ -821,31 +469,6 @@
   resolved "https://registry.npmjs.org/@types/parse-json/-/parse-json-4.0.2.tgz"
   integrity sha512-dISoDXWWQwUquiKsyZ4Ng+HX2KsPL7LyHKHQwgGFEA3IaKac4Obd+h2a/a6waisAoepJlBcx9paWqjA8/HVjCw==
 
-"@types/pg-pool@2.0.6":
-  version "2.0.6"
-  resolved "https://registry.yarnpkg.com/@types/pg-pool/-/pg-pool-2.0.6.tgz#1376d9dc5aec4bb2ec67ce28d7e9858227403c77"
-  integrity sha512-TaAUE5rq2VQYxab5Ts7WZhKNmuN78Q6PiFonTDdpbx8a1H0M1vhy3rhiMjl+e2iHmogyMw7jZF4FrE6eJUy5HQ==
-  dependencies:
-    "@types/pg" "*"
-
-"@types/pg@*":
-  version "8.11.10"
-  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.11.10.tgz#b8fb2b2b759d452fe3ec182beadd382563b63291"
-  integrity sha512-LczQUW4dbOQzsH2RQ5qoeJ6qJPdrcM/DcMLoqWQkMLMsq83J5lAX3LXjdkWdpscFy67JSOWDnh7Ny/sPFykmkg==
-  dependencies:
-    "@types/node" "*"
-    pg-protocol "*"
-    pg-types "^4.0.1"
-
-"@types/pg@8.6.1":
-  version "8.6.1"
-  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.6.1.tgz#099450b8dc977e8197a44f5229cedef95c8747f9"
-  integrity sha512-1Kc4oAGzAl7uqUStZCDvaLFqZrW9qWSjXOmBfdgyBP5La7Us6Mg4GBvRlSoaZMhQF/zSj1C8CtKMBkoiT8eL8w==
-  dependencies:
-    "@types/node" "*"
-    pg-protocol "*"
-    pg-types "^2.2.0"
-
 "@types/pg@^8.10.9":
   version "8.11.0"
   resolved "https://registry.npmjs.org/@types/pg/-/pg-8.11.0.tgz"
@@ -887,11 +510,6 @@
     "@types/mime" "*"
     "@types/node" "*"
 
-"@types/shimmer@^1.0.2", "@types/shimmer@^1.2.0":
-  version "1.2.0"
-  resolved "https://registry.yarnpkg.com/@types/shimmer/-/shimmer-1.2.0.tgz#9b706af96fa06416828842397a70dfbbf1c14ded"
-  integrity sha512-UE7oxhQLLd9gub6JKIAhDq06T0F6FnztwMNRvYgjeQSBeMc1ZG/tA47EwfduvkuQS8apbkM/lpLpWsaCeYsXVg==
-
 "@types/strip-bom@^3.0.0":
   version "3.0.0"
   resolved "https://registry.npmjs.org/@types/strip-bom/-/strip-bom-3.0.0.tgz"
@@ -1009,11 +627,6 @@ accepts@~1.3.8:
     mime-types "~2.1.34"
     negotiator "0.6.3"
 
-acorn-import-attributes@^1.9.5:
-  version "1.9.5"
-  resolved "https://registry.yarnpkg.com/acorn-import-attributes/-/acorn-import-attributes-1.9.5.tgz#7eb1557b1ba05ef18b5ed0ec67591bfab04688ef"
-  integrity sha512-n02Vykv5uA3eHGM/Z2dQrcD56kL8TyDb2p1+0P83PClMnC/nc+anbQRhIOWnSq4Ke/KvDPrY3C9hDtC/A3eHnQ==
-
 acorn-jsx@^5.3.2:
   version "5.3.2"
   resolved "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.3.2.tgz"
@@ -1029,10 +642,12 @@ acorn@^8.4.1, acorn@^8.9.0:
   resolved "https://registry.npmjs.org/acorn/-/acorn-8.11.3.tgz"
   integrity sha512-Y9rRfJG5jcKOE0CLisYbojUjIrIEE7AGMzA/Sm4BslANhbS+cDMpgBdcPT91oJ7OuJ9hYJBx59RjbhxVnrF8Xg==
 
-acorn@^8.8.2:
-  version "8.12.1"
-  resolved "https://registry.yarnpkg.com/acorn/-/acorn-8.12.1.tgz#71616bdccbe25e27a54439e0046e89ca76df2248"
-  integrity sha512-tcpGyI9zbizT9JbV6oYE477V6mTlXvvi0T0G3SNIYE2apm/G5huBa1+K89VGeovbg+jycCrfhl3ADxErOuO6Jg==
+agent-base@6:
+  version "6.0.2"
+  resolved "https://registry.yarnpkg.com/agent-base/-/agent-base-6.0.2.tgz#49fff58577cfee3f37176feab4c22e00f86d7f77"
+  integrity sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==
+  dependencies:
+    debug "4"
 
 aggregate-error@^3.0.0:
   version "3.1.0"
@@ -1199,11 +814,6 @@ astral-regex@^2.0.0:
   resolved "https://registry.npmjs.org/astral-regex/-/astral-regex-2.0.0.tgz"
   integrity sha512-Z7tMw1ytTXt5jqMcOP+OQteU1VuNK9Y02uuJtKQ1Sv69jXQKKg5cibLwGJow8yzZP+eAc18EmLGPal0bp36rvQ==
 
-async_hooks@^1.0.0:
-  version "1.0.0"
-  resolved "https://registry.yarnpkg.com/async_hooks/-/async_hooks-1.0.0.tgz#815f5e861fe73f64eb29fd942c32e95c8064052f"
-  integrity sha512-t4BSJgx48V3e7U6Ll3/WOUNmxIRPzmPdxVfgbyzcnRItEnn4iKp4F//b0sV3L9hzbdr5qxWdNWzOF7t+rjYSfA==
-
 asynckit@^0.4.0:
   version "0.4.0"
   resolved "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz"
@@ -1439,11 +1049,6 @@ chokidar@3.5.3, chokidar@^3.5.1, chokidar@^3.5.2:
   optionalDependencies:
     fsevents "~2.3.2"
 
-cjs-module-lexer@^1.2.2:
-  version "1.4.1"
-  resolved "https://registry.yarnpkg.com/cjs-module-lexer/-/cjs-module-lexer-1.4.1.tgz#707413784dbb3a72aa11c2f2b042a0bef4004170"
-  integrity sha512-cuSVIHi9/9E/+821Qjdvngor+xpnlwnuwIyZOaLmHBVdXL+gP+I6QQB9VkO7RI77YIcTV+S1W9AreJ5eN63JBA==
-
 clean-stack@^2.0.0:
   version "2.2.0"
   resolved "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz"
@@ -1602,6 +1207,13 @@ debug@2.6.9:
   dependencies:
     ms "2.0.0"
 
+debug@4:
+  version "4.3.7"
+  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
+  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
+  dependencies:
+    ms "^2.1.3"
+
 debug@4.3.4, debug@^4, debug@^4.3.1, debug@^4.3.2, debug@^4.3.4:
   version "4.3.4"
   resolved "https://registry.npmjs.org/debug/-/debug-4.3.4.tgz"
@@ -1616,13 +1228,6 @@ debug@^3.2.7:
   dependencies:
     ms "^2.1.1"
 
-debug@^4.3.5:
-  version "4.3.7"
-  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
-  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
-  dependencies:
-    ms "^2.1.3"
-
 decamelize@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/decamelize/-/decamelize-4.0.0.tgz"
@@ -1702,11 +1307,6 @@ detect-libc@^2.0.1:
   resolved "https://registry.npmjs.org/detect-libc/-/detect-libc-2.0.2.tgz"
   integrity sha512-UX6sGumvvqSaXgdKGUsgZWqcUyIXZ/vZTrlRT/iobiKhGL0zL4d3osHj3uqllWJK+i+sixDS/3COVEOFbupFyw==
 
-detect-libc@^2.0.2:
-  version "2.0.3"
-  resolved "https://registry.yarnpkg.com/detect-libc/-/detect-libc-2.0.3.tgz#f0cd503b40f9939b894697d19ad50895e30cf700"
-  integrity sha512-bwy0MGW55bG41VqxxypOsdSdGqLwXPI/focwgTYCFMbdUiBAxLg9CFzG08sz2aqzknwiX7Hkl0bQENjg8iLByw==
-
 diff@5.0.0:
   version "5.0.0"
   resolved "https://registry.npmjs.org/diff/-/diff-5.0.0.tgz"
@@ -2571,6 +2171,14 @@ http-errors@2.0.0:
     statuses "2.0.1"
     toidentifier "1.0.1"
 
+https-proxy-agent@^5.0.0:
+  version "5.0.1"
+  resolved "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-5.0.1.tgz#c59ef224a04fe8b754f3db0063a25ea30d0005d6"
+  integrity sha512-dFcAjpTQFgoLMzC2VwU+C/CbS7uRL0lWmxDITmqm7C+7F0Odmj6s9l6alZc6AELXhrnggM2CeWSXHGOdX2YtwA==
+  dependencies:
+    agent-base "6"
+    debug "4"
+
 human-signals@^1.1.1:
   version "1.1.1"
   resolved "https://registry.npmjs.org/human-signals/-/human-signals-1.1.1.tgz"
@@ -2611,16 +2219,6 @@ import-fresh@^3.2.1:
     parent-module "^1.0.0"
     resolve-from "^4.0.0"
 
-import-in-the-middle@^1.11.0, import-in-the-middle@^1.8.1:
-  version "1.11.2"
-  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.2.tgz#dd848e72b63ca6cd7c34df8b8d97fc9baee6174f"
-  integrity sha512-gK6Rr6EykBcc6cVWRSBR5TWf8nn6hZMYSRYqCcHa0l0d1fPK7JSYo6+Mlmck76jIX9aL/IZ71c06U2VpFwl1zA==
-  dependencies:
-    acorn "^8.8.2"
-    acorn-import-attributes "^1.9.5"
-    cjs-module-lexer "^1.2.2"
-    module-details-from-path "^1.0.3"
-
 imurmurhash@^0.1.4:
   version "0.1.4"
   resolved "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz"
@@ -3256,11 +2854,6 @@ mocha@^10.2.0:
     yargs-parser "20.2.4"
     yargs-unparser "2.0.0"
 
-module-details-from-path@^1.0.3:
-  version "1.0.3"
-  resolved "https://registry.yarnpkg.com/module-details-from-path/-/module-details-from-path-1.0.3.tgz#114c949673e2a8a35e9d35788527aa37b679da2b"
-  integrity sha512-ySViT69/76t8VhE1xXHK6Ch4NcDd26gx0MzKXLO+F7NOtnqH68d9zF94nT8ZWSxXh8ELOERsnJO/sWt1xZYw5A==
-
 morgan@^1.10.0:
   version "1.10.0"
   resolved "https://registry.npmjs.org/morgan/-/morgan-1.10.0.tgz"
@@ -3312,13 +2905,6 @@ nice-try@^1.0.4:
   resolved "https://registry.npmjs.org/nice-try/-/nice-try-1.0.5.tgz"
   integrity sha512-1nh45deeb5olNY7eX82BkPO7SSxR5SSYJiPTrTdFUVYwAl8CKMA5N9PjTYkHiRjisVcxcQ1HXdLhx2qxxJzLNQ==
 
-node-abi@^3.61.0:
-  version "3.68.0"
-  resolved "https://registry.yarnpkg.com/node-abi/-/node-abi-3.68.0.tgz#8f37fb02ecf4f43ebe694090dcb52e0c4cc4ba25"
-  integrity sha512-7vbj10trelExNjFSBm5kTvZXXa7pZyKWx9RCKIyqe6I9Ev3IzGpQoqBP3a+cOdxY+pWj6VkP28n/2wWysBHD/A==
-  dependencies:
-    semver "^7.3.5"
-
 node-domexception@^1.0.0:
   version "1.0.0"
   resolved "https://registry.yarnpkg.com/node-domexception/-/node-domexception-1.0.0.tgz#6888db46a1f71c0b76b3f7555016b63fe64766e5"
@@ -3676,7 +3262,7 @@ pg-protocol@*, pg-protocol@^1.6.0:
   resolved "https://registry.npmjs.org/pg-protocol/-/pg-protocol-1.6.0.tgz"
   integrity sha512-M+PDm637OY5WM307051+bsDia5Xej6d9IR4GwJse1qA1DIhiKlksvrneZOYQq42OM+spubpcNYEo2FcKQrDk+Q==
 
-pg-types@^2.1.0, pg-types@^2.2.0:
+pg-types@^2.1.0:
   version "2.2.0"
   resolved "https://registry.npmjs.org/pg-types/-/pg-types-2.2.0.tgz"
   integrity sha512-qTAAlrEsl8s4OiEQY69wDvcMIdQN6wdz5ojQiOy6YRMuynxenON0O5oCpJI6lshc6scgAY8qvJ2On/p+CXY0GA==
@@ -4036,21 +3622,12 @@ require-directory@^2.1.1:
   resolved "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz"
   integrity sha512-fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q==
 
-require-in-the-middle@^7.1.1:
-  version "7.4.0"
-  resolved "https://registry.yarnpkg.com/require-in-the-middle/-/require-in-the-middle-7.4.0.tgz#606977820d4b5f9be75e5a108ce34cfed25b3bb4"
-  integrity sha512-X34iHADNbNDfr6OTStIAHWSAvvKQRYgLO6duASaVf7J2VA3lvmNYboAHOuLC2huav1IwgZJtyEcJCKVzFxOSMQ==
-  dependencies:
-    debug "^4.3.5"
-    module-details-from-path "^1.0.3"
-    resolve "^1.22.8"
-
 resolve-from@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/resolve-from/-/resolve-from-4.0.0.tgz"
   integrity sha512-pb/MYmXstAkysRFx8piNI1tGFNQIFA3vkE3Gq4EuA1dF6gHp/+vgZqsCGJapvy8N3Q+4o7FwvquPJcnZ7RYy4g==
 
-resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4, resolve@^1.22.8:
+resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4:
   version "1.22.8"
   resolved "https://registry.npmjs.org/resolve/-/resolve-1.22.8.tgz"
   integrity sha512-oKWePCxqpd6FlLvGV1VU0x7bkPmmCNolxzjMf4NczoDnQcIWrAF+cPtZn5i6n+RfD2d9i0tzpKnG6Yk168yIyw==
@@ -4176,11 +3753,6 @@ semver@^6.3.1:
   resolved "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz"
   integrity sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==
 
-semver@^7.3.5, semver@^7.5.2:
-  version "7.6.3"
-  resolved "https://registry.yarnpkg.com/semver/-/semver-7.6.3.tgz#980f7b5550bc175fb4dc09403085627f9eb33143"
-  integrity sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==
-
 semver@^7.5.3, semver@^7.5.4:
   version "7.5.4"
   resolved "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz"
@@ -4283,11 +3855,6 @@ shell-quote@^1.6.1:
   resolved "https://registry.npmjs.org/shell-quote/-/shell-quote-1.8.1.tgz"
   integrity sha512-6j1W9l1iAs/4xYBI1SYOVZyFcCis9b4KCLQ8fgAGG07QvzaRLVVRQvAy85yNmmZSjYjg4MWh4gNvlPujU/5LpA==
 
-shimmer@^1.2.1:
-  version "1.2.1"
-  resolved "https://registry.yarnpkg.com/shimmer/-/shimmer-1.2.1.tgz#610859f7de327b587efebf501fb43117f9aff337"
-  integrity sha512-sQTKC1Re/rM6XyFM6fIAGHRPVGvyXfgzIDvzoq608vM+jeyVD0Tu1E6Np0Kc2zAIFWIj963V2800iF/9LPieQw==
-
 side-channel@^1.0.4:
   version "1.0.4"
   resolved "https://registry.npmjs.org/side-channel/-/side-channel-1.0.4.tgz"
@@ -4405,7 +3972,16 @@ string-argv@0.3.1:
   resolved "https://registry.npmjs.org/string-argv/-/string-argv-0.3.1.tgz"
   integrity sha512-a1uQGz7IyVy9YwhqjZIZu1c8JO8dNIe20xBmSS6qu9kv++k3JGzCVmprbNN5Kn+BgzD5E7YYwg1CcjuJMRNsvg==
 
-"string-width-cjs@npm:string-width@^4.2.0", string-width@^4.1.0, string-width@^4.2.0:
+"string-width-cjs@npm:string-width@^4.2.0":
+  version "4.2.3"
+  resolved "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz"
+  integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
+  dependencies:
+    emoji-regex "^8.0.0"
+    is-fullwidth-code-point "^3.0.0"
+    strip-ansi "^6.0.1"
+
+string-width@^4.1.0, string-width@^4.2.0:
   version "4.2.3"
   resolved "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz"
   integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
@@ -4475,7 +4051,14 @@ stringify-object@^3.3.0:
     is-obj "^1.0.1"
     is-regexp "^1.0.0"
 
-"strip-ansi-cjs@npm:strip-ansi@^6.0.1", strip-ansi@^6.0.0, strip-ansi@^6.0.1:
+"strip-ansi-cjs@npm:strip-ansi@^6.0.1":
+  version "6.0.1"
+  resolved "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz"
+  integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
+  dependencies:
+    ansi-regex "^5.0.1"
+
+strip-ansi@^6.0.0, strip-ansi@^6.0.1:
   version "6.0.1"
   resolved "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz"
   integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
@@ -4870,7 +4453,7 @@ workerpool@6.2.1:
   resolved "https://registry.npmjs.org/workerpool/-/workerpool-6.2.1.tgz"
   integrity sha512-ILEIE97kDZvF9Wb9f6h5aXK4swSlKGUcOEGiIYb2OOu/IrDU9iwj0fD//SsA6E5ibwJxpEvhullJY4Sl4GcpAw==
 
-"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
+"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0":
   version "7.0.0"
   resolved "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz"
   integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
@@ -4888,6 +4471,15 @@ wrap-ansi@^6.2.0:
     string-width "^4.1.0"
     strip-ansi "^6.0.0"
 
+wrap-ansi@^7.0.0:
+  version "7.0.0"
+  resolved "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz"
+  integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
+  dependencies:
+    ansi-styles "^4.0.0"
+    string-width "^4.1.0"
+    strip-ansi "^6.0.0"
+
 wrap-ansi@^8.1.0:
   version "8.1.0"
   resolved "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz"
diff --git a/desci-server/package.json b/desci-server/package.json
index 470a8a218..ec8c73380 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -70,8 +70,8 @@
     "@react-email/components": "0.0.15",
     "@sendgrid/mail": "^7.7.0",
     "@sentry/cli": "^2.35.0",
-    "@sentry/node": "^8.29.0",
-    "@sentry/profiling-node": "^8.32.0",
+    "@sentry/node": "8.29.0",
+    "@sentry/profiling-node": "8.32.0",
     "@sentry/tracing": "^7.12.0",
     "@types/lodash-es": "^4.17.12",
     "@types/mkdirp": "^1.0.2",
diff --git a/desci-server/yarn.lock b/desci-server/yarn.lock
index 73dfed96f..c45cfcd68 100644
--- a/desci-server/yarn.lock
+++ b/desci-server/yarn.lock
@@ -5725,18 +5725,16 @@
     "@sentry/types" "8.32.0"
     "@sentry/utils" "8.32.0"
 
-"@sentry/node@8.32.0":
-  version "8.32.0"
-  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.32.0.tgz#68822b3246fb2ed7418f21795ed539a18058cfa8"
-  integrity sha512-a2PoFA9j/HmJVGF/zXJhLP6QhRHGye/2EznQdHOELsH1BkeMgBaXl7D52r2E/b7qki647lXrdbspB6jid8NycA==
+"@sentry/node@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.29.0.tgz#6e462b8802356a630c56733dc795a4035464c4ab"
+  integrity sha512-RCKpWR6DUWmlxtms10MRXwJZRrFt1a2P38FjwEEahcdcK1R6wB8GPf0GO4JnJAiw6oeM0MERSqLIcSLT8+FxtA==
   dependencies:
     "@opentelemetry/api" "^1.9.0"
     "@opentelemetry/context-async-hooks" "^1.25.1"
     "@opentelemetry/core" "^1.25.1"
     "@opentelemetry/instrumentation" "^0.53.0"
-    "@opentelemetry/instrumentation-amqplib" "^0.42.0"
     "@opentelemetry/instrumentation-connect" "0.39.0"
-    "@opentelemetry/instrumentation-dataloader" "0.12.0"
     "@opentelemetry/instrumentation-express" "0.42.0"
     "@opentelemetry/instrumentation-fastify" "0.39.0"
     "@opentelemetry/instrumentation-fs" "0.15.0"
@@ -5745,7 +5743,6 @@
     "@opentelemetry/instrumentation-hapi" "0.41.0"
     "@opentelemetry/instrumentation-http" "0.53.0"
     "@opentelemetry/instrumentation-ioredis" "0.43.0"
-    "@opentelemetry/instrumentation-kafkajs" "0.3.0"
     "@opentelemetry/instrumentation-koa" "0.43.0"
     "@opentelemetry/instrumentation-mongodb" "0.47.0"
     "@opentelemetry/instrumentation-mongoose" "0.42.0"
@@ -5754,27 +5751,30 @@
     "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
     "@opentelemetry/instrumentation-pg" "0.44.0"
     "@opentelemetry/instrumentation-redis-4" "0.42.0"
-    "@opentelemetry/instrumentation-undici" "0.6.0"
-    "@opentelemetry/resources" "^1.26.0"
-    "@opentelemetry/sdk-trace-base" "^1.26.0"
-    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@opentelemetry/resources" "^1.25.1"
+    "@opentelemetry/sdk-trace-base" "^1.25.1"
+    "@opentelemetry/semantic-conventions" "^1.25.1"
     "@prisma/instrumentation" "5.19.1"
-    "@sentry/core" "8.32.0"
-    "@sentry/opentelemetry" "8.32.0"
-    "@sentry/types" "8.32.0"
-    "@sentry/utils" "8.32.0"
+    "@sentry/core" "8.29.0"
+    "@sentry/opentelemetry" "8.29.0"
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
     import-in-the-middle "^1.11.0"
+  optionalDependencies:
+    opentelemetry-instrumentation-fetch-node "1.2.3"
 
-"@sentry/node@^8.29.0":
-  version "8.29.0"
-  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.29.0.tgz#6e462b8802356a630c56733dc795a4035464c4ab"
-  integrity sha512-RCKpWR6DUWmlxtms10MRXwJZRrFt1a2P38FjwEEahcdcK1R6wB8GPf0GO4JnJAiw6oeM0MERSqLIcSLT8+FxtA==
+"@sentry/node@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.32.0.tgz#68822b3246fb2ed7418f21795ed539a18058cfa8"
+  integrity sha512-a2PoFA9j/HmJVGF/zXJhLP6QhRHGye/2EznQdHOELsH1BkeMgBaXl7D52r2E/b7qki647lXrdbspB6jid8NycA==
   dependencies:
     "@opentelemetry/api" "^1.9.0"
     "@opentelemetry/context-async-hooks" "^1.25.1"
     "@opentelemetry/core" "^1.25.1"
     "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/instrumentation-amqplib" "^0.42.0"
     "@opentelemetry/instrumentation-connect" "0.39.0"
+    "@opentelemetry/instrumentation-dataloader" "0.12.0"
     "@opentelemetry/instrumentation-express" "0.42.0"
     "@opentelemetry/instrumentation-fastify" "0.39.0"
     "@opentelemetry/instrumentation-fs" "0.15.0"
@@ -5783,6 +5783,7 @@
     "@opentelemetry/instrumentation-hapi" "0.41.0"
     "@opentelemetry/instrumentation-http" "0.53.0"
     "@opentelemetry/instrumentation-ioredis" "0.43.0"
+    "@opentelemetry/instrumentation-kafkajs" "0.3.0"
     "@opentelemetry/instrumentation-koa" "0.43.0"
     "@opentelemetry/instrumentation-mongodb" "0.47.0"
     "@opentelemetry/instrumentation-mongoose" "0.42.0"
@@ -5791,17 +5792,16 @@
     "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
     "@opentelemetry/instrumentation-pg" "0.44.0"
     "@opentelemetry/instrumentation-redis-4" "0.42.0"
-    "@opentelemetry/resources" "^1.25.1"
-    "@opentelemetry/sdk-trace-base" "^1.25.1"
-    "@opentelemetry/semantic-conventions" "^1.25.1"
+    "@opentelemetry/instrumentation-undici" "0.6.0"
+    "@opentelemetry/resources" "^1.26.0"
+    "@opentelemetry/sdk-trace-base" "^1.26.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
     "@prisma/instrumentation" "5.19.1"
-    "@sentry/core" "8.29.0"
-    "@sentry/opentelemetry" "8.29.0"
-    "@sentry/types" "8.29.0"
-    "@sentry/utils" "8.29.0"
+    "@sentry/core" "8.32.0"
+    "@sentry/opentelemetry" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
     import-in-the-middle "^1.11.0"
-  optionalDependencies:
-    opentelemetry-instrumentation-fetch-node "1.2.3"
 
 "@sentry/opentelemetry@8.29.0":
   version "8.29.0"
@@ -5821,7 +5821,7 @@
     "@sentry/types" "8.32.0"
     "@sentry/utils" "8.32.0"
 
-"@sentry/profiling-node@^8.32.0":
+"@sentry/profiling-node@8.32.0":
   version "8.32.0"
   resolved "https://registry.yarnpkg.com/@sentry/profiling-node/-/profiling-node-8.32.0.tgz#cb4bf0512dc7a6f0a9058529f3c4dbb8963a597d"
   integrity sha512-wKE2JAvDM3DjVNFKd2YLzwhXFS3SurLxDPpvA1EjMQ9Me7sR5ssO9jFn3e6et5oT3e3EzGDyTfbrJ81BNQuZhQ==
@@ -12071,9 +12071,9 @@ import-in-the-middle@1.7.1:
     module-details-from-path "^1.0.3"
 
 import-in-the-middle@^1.11.0, import-in-the-middle@^1.8.1:
-  version "1.11.0"
-  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.0.tgz#a94c4925b8da18256cde3b3b7b38253e6ca5e708"
-  integrity sha512-5DimNQGoe0pLUHbR9qK84iWaWjjbsxiqXnw6Qz64+azRgleqv9k2kTt5fw7QsOpmaGYtuxxursnPPsnTKEx10Q==
+  version "1.11.2"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.2.tgz#dd848e72b63ca6cd7c34df8b8d97fc9baee6174f"
+  integrity sha512-gK6Rr6EykBcc6cVWRSBR5TWf8nn6hZMYSRYqCcHa0l0d1fPK7JSYo6+Mlmck76jIX9aL/IZ71c06U2VpFwl1zA==
   dependencies:
     acorn "^8.8.2"
     acorn-import-attributes "^1.9.5"

From 39594d0eb3323c46dfe2f8aaa441e61317ee8419 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 08:46:22 -0500
Subject: [PATCH 71/81] test sentrrry

---
 desci-repo/src/instrument.ts |  4 ++--
 desci-repo/src/server.ts     | 26 +++++++++++++++++++-------
 2 files changed, 21 insertions(+), 9 deletions(-)

diff --git a/desci-repo/src/instrument.ts b/desci-repo/src/instrument.ts
index fb4a64602..45c4ce46d 100644
--- a/desci-repo/src/instrument.ts
+++ b/desci-repo/src/instrument.ts
@@ -1,13 +1,13 @@
 import * as Sentry from '@sentry/node';
 import { nodeProfilingIntegration } from '@sentry/profiling-node';
 
-const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
+const ENABLE_TELEMETRY = true; // process.env.NODE_ENV === 'production';
 
 if (ENABLE_TELEMETRY) {
   Sentry.init({
     dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
     release: 'desci-nodes-repo@' + process.env.npm_package_version,
-    integrations: [nodeProfilingIntegration()],
+    integrations: [],
     // Set tracesSampleRate to 1.0 to capture 100%
     // of transactions for performance monitoring.
     // We recommend adjusting this value in production
diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 9072b7f48..9ab9fd0f6 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,7 +1,8 @@
-import './instrument.js';
+// import './instrument.js';
 import * as Sentry from '@sentry/node';
+import { nodeProfilingIntegration } from '@sentry/profiling-node';
 
-const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
+const ENABLE_TELEMETRY = true; //process.env.NODE_ENV === 'production';
 const IS_DEV = !ENABLE_TELEMETRY;
 
 // @ts-check
@@ -109,6 +110,9 @@ class AppServer {
       });
     });
 
+    // init telementry
+    this.#initTelemetry();
+
     this.app.use(bodyParser.json({ limit: '100mb' }));
     this.app.use(bodyParser.urlencoded({ extended: false }));
 
@@ -125,9 +129,6 @@ class AppServer {
       res.status(200).json({ id: serverUuid });
     });
 
-    // init telementry
-    this.#initTelemetry();
-
     this.port = process.env.PORT ? parseInt(process.env.PORT) : 5484;
     logger.info(`Server starting on port ${this.port}`);
     this.server = this.app.listen(this.port, () => {
@@ -202,10 +203,21 @@ class AppServer {
     );
   }
 
-  async #initTelemetry() {
+  #initTelemetry() {
     if (ENABLE_TELEMETRY) {
       logger.info('[DeSci Repo] Telemetry enabled');
-      Sentry.setupExpressErrorHandler(this.app);
+      Sentry.init({
+        dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
+        release: 'desci-nodes-repo@' + process.env.npm_package_version,
+        integrations: [nodeProfilingIntegration()],
+        // Set tracesSampleRate to 1.0 to capture 100%
+        // of transactions for performance monitoring.
+        // We recommend adjusting this value in production
+        tracesSampleRate: 1.0,
+        profilesSampleRate: 1.0,
+      });
+      // Sentry.setupExpressErrorHandler(this.app);
+      this.app.use(Sentry.expressErrorHandler());
     } else {
       logger.info('[DeSci Repo] Telemetry disabled');
     }

From 0925f38537e98f15efb5450af8ab5b38d52d24db Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 08:47:12 -0500
Subject: [PATCH 72/81] remove trash

---
 desci-repo/src/instrument.ts | 17 -----------------
 desci-repo/src/server.ts     |  1 -
 2 files changed, 18 deletions(-)
 delete mode 100644 desci-repo/src/instrument.ts

diff --git a/desci-repo/src/instrument.ts b/desci-repo/src/instrument.ts
deleted file mode 100644
index 45c4ce46d..000000000
--- a/desci-repo/src/instrument.ts
+++ /dev/null
@@ -1,17 +0,0 @@
-import * as Sentry from '@sentry/node';
-import { nodeProfilingIntegration } from '@sentry/profiling-node';
-
-const ENABLE_TELEMETRY = true; // process.env.NODE_ENV === 'production';
-
-if (ENABLE_TELEMETRY) {
-  Sentry.init({
-    dsn: 'https://d508a5c408f34b919ccd94aac093e076@o1330109.ingest.sentry.io/6619754',
-    release: 'desci-nodes-repo@' + process.env.npm_package_version,
-    integrations: [],
-    // Set tracesSampleRate to 1.0 to capture 100%
-    // of transactions for performance monitoring.
-    // We recommend adjusting this value in production
-    tracesSampleRate: 1.0,
-    profilesSampleRate: 1.0,
-  });
-}
diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 9ab9fd0f6..1035756a1 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,4 +1,3 @@
-// import './instrument.js';
 import * as Sentry from '@sentry/node';
 import { nodeProfilingIntegration } from '@sentry/profiling-node';
 

From e3a53baba5400181f1d641b65e1cb4ec97e0d8c4 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 08:50:14 -0500
Subject: [PATCH 73/81] remove static flag

---
 desci-repo/src/server.ts | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/desci-repo/src/server.ts b/desci-repo/src/server.ts
index 1035756a1..f8b95d724 100644
--- a/desci-repo/src/server.ts
+++ b/desci-repo/src/server.ts
@@ -1,7 +1,7 @@
 import * as Sentry from '@sentry/node';
 import { nodeProfilingIntegration } from '@sentry/profiling-node';
 
-const ENABLE_TELEMETRY = true; //process.env.NODE_ENV === 'production';
+const ENABLE_TELEMETRY = process.env.NODE_ENV === 'production';
 const IS_DEV = !ENABLE_TELEMETRY;
 
 // @ts-check

From cc05ff20210a288a429917c446efcdf528e79ff1 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 08:55:48 -0500
Subject: [PATCH 74/81] fix deps

---
 desci-repo/package.json |   3 +-
 desci-repo/yarn.lock    | 643 ++++++++++++++++++++++++++++++++++++----
 2 files changed, 584 insertions(+), 62 deletions(-)

diff --git a/desci-repo/package.json b/desci-repo/package.json
index 4ee7e0a47..740c5882e 100644
--- a/desci-repo/package.json
+++ b/desci-repo/package.json
@@ -69,7 +69,8 @@
   },
   "dependencies": {
     "@desci-labs/desci-models": "0.2.11",
-    "@sentry/node": "7.84.0",
+    "@sentry/node": "8.29.0",
+    "@sentry/profiling-node": "8.32.0",
     "@sentry/tracing": "^7.84.0",
     "axios": "^1.6.2",
     "cors": "^2.8.5",
diff --git a/desci-repo/yarn.lock b/desci-repo/yarn.lock
index da3a880c0..e6744e445 100644
--- a/desci-repo/yarn.lock
+++ b/desci-repo/yarn.lock
@@ -260,6 +260,297 @@
     "@nodelib/fs.scandir" "2.1.5"
     fastq "^1.6.0"
 
+"@opentelemetry/api-logs@0.52.1":
+  version "0.52.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.52.1.tgz#52906375da4d64c206b0c4cb8ffa209214654ecc"
+  integrity sha512-qnSqB2DQ9TPP96dl8cDubDvrUyWc0/sK81xHTK8eSUspzDM3bsewX903qclQFvVhgStjRWdC5bLb3kQqMkfV5A==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api-logs@0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api-logs/-/api-logs-0.53.0.tgz#c478cbd8120ec2547b64edfa03a552cfe42170be"
+  integrity sha512-8HArjKx+RaAI8uEIgcORbZIPklyh1YLjPSBus8hjRmvLi6DeFzgOcdZ7KwPabKj8mXF8dX0hyfAyGfycz0DbFw==
+  dependencies:
+    "@opentelemetry/api" "^1.0.0"
+
+"@opentelemetry/api@^1.0.0", "@opentelemetry/api@^1.8", "@opentelemetry/api@^1.9.0":
+  version "1.9.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/api/-/api-1.9.0.tgz#d03eba68273dc0f7509e2a3d5cba21eae10379fe"
+  integrity sha512-3giAOQvZiH5F9bMlMiv8+GSPMeqg0dbaeo58/0SlA9sxSqZhnUtxzX9/2FzyhS9sWQf5S0GJE0AKBrFqjpeYcg==
+
+"@opentelemetry/context-async-hooks@^1.25.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/context-async-hooks/-/context-async-hooks-1.26.0.tgz#fa92f722cf685685334bba95f258d3ef9fce60f6"
+  integrity sha512-HedpXXYzzbaoutw6DFLWLDket2FwLkLpil4hGCZ1xYEIMTcivdfwEOISgdbLEWyG3HW52gTq2V9mOVJrONgiwg==
+
+"@opentelemetry/core@1.26.0", "@opentelemetry/core@^1.1.0", "@opentelemetry/core@^1.25.1", "@opentelemetry/core@^1.8.0":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/core/-/core-1.26.0.tgz#7d84265aaa850ed0ca5813f97d831155be42b328"
+  integrity sha512-1iKxXXE8415Cdv0yjG3G6hQnB5eVEsJce3QaawX8SjDn0mAS0ZM8fAbZZJD4ajvhC15cePvosSCut404KrIIvQ==
+  dependencies:
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
+"@opentelemetry/instrumentation-amqplib@^0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-amqplib/-/instrumentation-amqplib-0.42.0.tgz#b3cab5a7207736a30d769962eed3af3838f986c4"
+  integrity sha512-fiuU6OKsqHJiydHWgTRQ7MnIrJ2lEqsdgFtNIH4LbAUJl/5XmrIeoDzDnox+hfkgWK65jsleFuQDtYb5hW1koQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-connect@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-connect/-/instrumentation-connect-0.39.0.tgz#32bdbaac464cba061c95df6c850ee81efdd86f8b"
+  integrity sha512-pGBiKevLq7NNglMgqzmeKczF4XQMTOUOTkK8afRHMZMnrK3fcETyTH7lVaSozwiOM3Ws+SuEmXZT7DYrrhxGlg==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@types/connect" "3.4.36"
+
+"@opentelemetry/instrumentation-dataloader@0.12.0":
+  version "0.12.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-dataloader/-/instrumentation-dataloader-0.12.0.tgz#de03a3948dec4f15fed80aa424d6bd5d6a8d10c7"
+  integrity sha512-pnPxatoFE0OXIZDQhL2okF//dmbiWFzcSc8pUg9TqofCLYZySSxDCgQc69CJBo5JnI3Gz1KP+mOjS4WAeRIH4g==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation-express@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-express/-/instrumentation-express-0.42.0.tgz#279f195aa66baee2b98623a16666c6229c8e7564"
+  integrity sha512-YNcy7ZfGnLsVEqGXQPT+S0G1AE46N21ORY7i7yUQyfhGAL4RBjnZUqefMI0NwqIl6nGbr1IpF0rZGoN8Q7x12Q==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-fastify@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fastify/-/instrumentation-fastify-0.39.0.tgz#96a040e4944daf77c53a8fe5a128bc3b2568e4aa"
+  integrity sha512-SS9uSlKcsWZabhBp2szErkeuuBDgxOUlllwkS92dVaWRnMmwysPhcEgHKB8rUe3BHg/GnZC1eo1hbTZv4YhfoA==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-fs@0.15.0":
+  version "0.15.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-fs/-/instrumentation-fs-0.15.0.tgz#41658507860f39fee5209bca961cea8d24ca2a83"
+  integrity sha512-JWVKdNLpu1skqZQA//jKOcKdJC66TWKqa2FUFq70rKohvaSq47pmXlnabNO+B/BvLfmidfiaN35XakT5RyMl2Q==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation-generic-pool@0.39.0":
+  version "0.39.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-generic-pool/-/instrumentation-generic-pool-0.39.0.tgz#2b9af16ad82d5cbe67125c0125753cecd162a728"
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+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation-graphql@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-graphql/-/instrumentation-graphql-0.43.0.tgz#71bb94ea775c70dbd388c739b397ec1418f3f170"
+  integrity sha512-aI3YMmC2McGd8KW5du1a2gBA0iOMOGLqg4s9YjzwbjFwjlmMNFSK1P3AIg374GWg823RPUGfVTIgZ/juk9CVOA==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation-hapi@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-hapi/-/instrumentation-hapi-0.41.0.tgz#de8711907256d8fae1b5faf71fc825cef4a7ddbb"
+  integrity sha512-jKDrxPNXDByPlYcMdZjNPYCvw0SQJjN+B1A+QH+sx+sAHsKSAf9hwFiJSrI6C4XdOls43V/f/fkp9ITkHhKFbQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-http@0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-http/-/instrumentation-http-0.53.0.tgz#0d806adf1b3aba036bc46e16162e3c0dbb8a6b60"
+  integrity sha512-H74ErMeDuZfj7KgYCTOFGWF5W9AfaPnqLQQxeFq85+D29wwV2yqHbz2IKLYpkOh7EI6QwDEl7rZCIxjJLyc/CQ==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/instrumentation" "0.53.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+    semver "^7.5.2"
+
+"@opentelemetry/instrumentation-ioredis@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-ioredis/-/instrumentation-ioredis-0.43.0.tgz#dbadabaeefc4cb47c406f878444f1bcac774fa89"
+  integrity sha512-i3Dke/LdhZbiUAEImmRG3i7Dimm/BD7t8pDDzwepSvIQ6s2X6FPia7561gw+64w+nx0+G9X14D7rEfaMEmmjig==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/redis-common" "^0.36.2"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-kafkajs@0.3.0":
+  version "0.3.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-kafkajs/-/instrumentation-kafkajs-0.3.0.tgz#6687bce4dac8b90ef8ccbf1b662d5d1e95a34414"
+  integrity sha512-UnkZueYK1ise8FXQeKlpBd7YYUtC7mM8J0wzUSccEfc/G8UqHQqAzIyYCUOUPUKp8GsjLnWOOK/3hJc4owb7Jg==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-koa@0.43.0":
+  version "0.43.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-koa/-/instrumentation-koa-0.43.0.tgz#963fd192a1b5f6cbae5dabf4ec82e3105cbb23b1"
+  integrity sha512-lDAhSnmoTIN6ELKmLJBplXzT/Jqs5jGZehuG22EdSMaTwgjMpxMDI1YtlKEhiWPWkrz5LUsd0aOO0ZRc9vn3AQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-mongodb@0.47.0":
+  version "0.47.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongodb/-/instrumentation-mongodb-0.47.0.tgz#f8107d878281433905e717f223fb4c0f10356a7b"
+  integrity sha512-yqyXRx2SulEURjgOQyJzhCECSh5i1uM49NUaq9TqLd6fA7g26OahyJfsr9NE38HFqGRHpi4loyrnfYGdrsoVjQ==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/sdk-metrics" "^1.9.1"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-mongoose@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mongoose/-/instrumentation-mongoose-0.42.0.tgz#375afd21adfcd897a8f521c1ffd2d91e6a428705"
+  integrity sha512-AnWv+RaR86uG3qNEMwt3plKX1ueRM7AspfszJYVkvkehiicC3bHQA6vWdb6Zvy5HAE14RyFbu9+2hUUjR2NSyg==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-mysql2@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql2/-/instrumentation-mysql2-0.41.0.tgz#6377b6e2d2487fd88e1d79aa03658db6c8d51651"
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+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@opentelemetry/sql-common" "^0.40.1"
+
+"@opentelemetry/instrumentation-mysql@0.41.0":
+  version "0.41.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-mysql/-/instrumentation-mysql-0.41.0.tgz#2d50691ead5219774bd36d66c35d5b4681485dd7"
+  integrity sha512-jnvrV6BsQWyHS2qb2fkfbfSb1R/lmYwqEZITwufuRl37apTopswu9izc0b1CYRp/34tUG/4k/V39PND6eyiNvw==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@types/mysql" "2.15.26"
+
+"@opentelemetry/instrumentation-nestjs-core@0.40.0":
+  version "0.40.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-nestjs-core/-/instrumentation-nestjs-core-0.40.0.tgz#2c0e6405b56caaec32747d55c57ff9a034668ea8"
+  integrity sha512-WF1hCUed07vKmf5BzEkL0wSPinqJgH7kGzOjjMAiTGacofNXjb/y4KQ8loj2sNsh5C/NN7s1zxQuCgbWbVTGKg==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-pg@0.44.0":
+  version "0.44.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-pg/-/instrumentation-pg-0.44.0.tgz#1e97a0aeb2dca068ee23ce75884a0a0063a7ce3f"
+  integrity sha512-oTWVyzKqXud1BYEGX1loo2o4k4vaU1elr3vPO8NZolrBtFvQ34nx4HgUaexUDuEog00qQt+MLR5gws/p+JXMLQ==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@opentelemetry/sql-common" "^0.40.1"
+    "@types/pg" "8.6.1"
+    "@types/pg-pool" "2.0.6"
+
+"@opentelemetry/instrumentation-redis-4@0.42.0":
+  version "0.42.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-redis-4/-/instrumentation-redis-4-0.42.0.tgz#fc01104cfe884c7546385eaae03c57a47edd19d1"
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+  dependencies:
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/redis-common" "^0.36.2"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+
+"@opentelemetry/instrumentation-undici@0.6.0":
+  version "0.6.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation-undici/-/instrumentation-undici-0.6.0.tgz#9436ee155c8dcb0b760b66947c0e0f347688a5ef"
+  integrity sha512-ABJBhm5OdhGmbh0S/fOTE4N69IZ00CsHC5ijMYfzbw3E5NwLgpQk5xsljaECrJ8wz1SfXbO03FiSuu5AyRAkvQ==
+  dependencies:
+    "@opentelemetry/core" "^1.8.0"
+    "@opentelemetry/instrumentation" "^0.53.0"
+
+"@opentelemetry/instrumentation@0.53.0", "@opentelemetry/instrumentation@^0.53.0":
+  version "0.53.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.53.0.tgz#e6369e4015eb5112468a4d45d38dcada7dad892d"
+  integrity sha512-DMwg0hy4wzf7K73JJtl95m/e0boSoWhH07rfvHvYzQtBD3Bmv0Wc1x733vyZBqmFm8OjJD0/pfiUg1W3JjFX0A==
+  dependencies:
+    "@opentelemetry/api-logs" "0.53.0"
+    "@types/shimmer" "^1.2.0"
+    import-in-the-middle "^1.8.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
+"@opentelemetry/instrumentation@^0.46.0":
+  version "0.46.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.46.0.tgz#a8a252306f82e2eace489312798592a14eb9830e"
+  integrity sha512-a9TijXZZbk0vI5TGLZl+0kxyFfrXHhX6Svtz7Pp2/VBlCSKrazuULEyoJQrOknJyFWNMEmbbJgOciHCCpQcisw==
+  dependencies:
+    "@types/shimmer" "^1.0.2"
+    import-in-the-middle "1.7.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
+"@opentelemetry/instrumentation@^0.49 || ^0.50 || ^0.51 || ^0.52.0":
+  version "0.52.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/instrumentation/-/instrumentation-0.52.1.tgz#2e7e46a38bd7afbf03cf688c862b0b43418b7f48"
+  integrity sha512-uXJbYU/5/MBHjMp1FqrILLRuiJCs3Ofk0MeRDk8g1S1gD47U8X3JnSwcMO1rtRo1x1a7zKaQHaoYu49p/4eSKw==
+  dependencies:
+    "@opentelemetry/api-logs" "0.52.1"
+    "@types/shimmer" "^1.0.2"
+    import-in-the-middle "^1.8.1"
+    require-in-the-middle "^7.1.1"
+    semver "^7.5.2"
+    shimmer "^1.2.1"
+
+"@opentelemetry/redis-common@^0.36.2":
+  version "0.36.2"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/redis-common/-/redis-common-0.36.2.tgz#906ac8e4d804d4109f3ebd5c224ac988276fdc47"
+  integrity sha512-faYX1N0gpLhej/6nyp6bgRjzAKXn5GOEMYY7YhciSfCoITAktLUtQ36d24QEWNA1/WA1y6qQunCe0OhHRkVl9g==
+
+"@opentelemetry/resources@1.26.0", "@opentelemetry/resources@^1.25.1", "@opentelemetry/resources@^1.26.0":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/resources/-/resources-1.26.0.tgz#da4c7366018bd8add1f3aa9c91c6ac59fd503cef"
+  integrity sha512-CPNYchBE7MBecCSVy0HKpUISEeJOniWqcHaAHpmasZ3j9o6V3AyBzhRc90jdmemq0HOxDr6ylhUbDhBqqPpeNw==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
+"@opentelemetry/sdk-metrics@^1.9.1":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/sdk-metrics/-/sdk-metrics-1.26.0.tgz#37bb0afb1d4447f50aab9cdd05db6f2d8b86103e"
+  integrity sha512-0SvDXmou/JjzSDOjUmetAAvcKQW6ZrvosU0rkbDGpXvvZN+pQF6JbK/Kd4hNdK4q/22yeruqvukXEJyySTzyTQ==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/resources" "1.26.0"
+
+"@opentelemetry/sdk-trace-base@^1.22", "@opentelemetry/sdk-trace-base@^1.25.1", "@opentelemetry/sdk-trace-base@^1.26.0":
+  version "1.26.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/sdk-trace-base/-/sdk-trace-base-1.26.0.tgz#0c913bc6d2cfafd901de330e4540952269ae579c"
+  integrity sha512-olWQldtvbK4v22ymrKLbIcBi9L2SpMO84sCPY54IVsJhP9fRsxJT194C/AVaAuJzLE30EdhhM1VmvVYR7az+cw==
+  dependencies:
+    "@opentelemetry/core" "1.26.0"
+    "@opentelemetry/resources" "1.26.0"
+    "@opentelemetry/semantic-conventions" "1.27.0"
+
+"@opentelemetry/semantic-conventions@1.27.0", "@opentelemetry/semantic-conventions@^1.17.0", "@opentelemetry/semantic-conventions@^1.25.1", "@opentelemetry/semantic-conventions@^1.27.0":
+  version "1.27.0"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/semantic-conventions/-/semantic-conventions-1.27.0.tgz#1a857dcc95a5ab30122e04417148211e6f945e6c"
+  integrity sha512-sAay1RrB+ONOem0OZanAR1ZI/k7yDpnOQSQmTMuGImUQb2y8EbSaCJ94FQluM74xoU03vlb2d2U90hZluL6nQg==
+
+"@opentelemetry/sql-common@^0.40.1":
+  version "0.40.1"
+  resolved "https://registry.yarnpkg.com/@opentelemetry/sql-common/-/sql-common-0.40.1.tgz#93fbc48d8017449f5b3c3274f2268a08af2b83b6"
+  integrity sha512-nSDlnHSqzC3pXn/wZEZVLuAuJ1MYMXPBwtv2qAbCa3847SaHItdE7SzUq/Jtb0KZmh1zfAbNi3AAMjztTT4Ugg==
+  dependencies:
+    "@opentelemetry/core" "^1.1.0"
+
 "@pkgjs/parseargs@^0.11.0":
   version "0.11.0"
   resolved "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz"
@@ -270,14 +561,14 @@
   resolved "https://registry.npmjs.org/@pkgr/core/-/core-0.1.1.tgz"
   integrity sha512-cq8o4cWH0ibXh9VGi5P20Tu9XF/0fFXl9EUinr9QfTM7a7p0oTA4iJRCQWppXR1Pg8dSM0UCItCkPwsk9qWWYA==
 
-"@sentry-internal/tracing@7.84.0":
-  version "7.84.0"
-  resolved "https://registry.yarnpkg.com/@sentry-internal/tracing/-/tracing-7.84.0.tgz#430da253ee5b075be4ef57f20ea842c0208bc6b0"
-  integrity sha512-y9bGYA0OM6PEREfd+nk4UURZy29tpIw+7vQwpxWfEVs2fqq0/5TBFX/tKFb8AKUI9lVM8v0bcF0bNSCnuPQZHQ==
+"@prisma/instrumentation@5.19.1":
+  version "5.19.1"
+  resolved "https://registry.yarnpkg.com/@prisma/instrumentation/-/instrumentation-5.19.1.tgz#146319cf85f22b7a43296f0f40cfeac55516e66e"
+  integrity sha512-VLnzMQq7CWroL5AeaW0Py2huiNKeoMfCH3SUxstdzPrlWQi6UQ9UrfcbUkNHlVFqOMacqy8X/8YtE0kuKDpD9w==
   dependencies:
-    "@sentry/core" "7.84.0"
-    "@sentry/types" "7.84.0"
-    "@sentry/utils" "7.84.0"
+    "@opentelemetry/api" "^1.8"
+    "@opentelemetry/instrumentation" "^0.49 || ^0.50 || ^0.51 || ^0.52.0"
+    "@opentelemetry/sdk-trace-base" "^1.22"
 
 "@sentry-internal/tracing@7.99.0":
   version "7.99.0"
@@ -288,14 +579,6 @@
     "@sentry/types" "7.99.0"
     "@sentry/utils" "7.99.0"
 
-"@sentry/core@7.84.0":
-  version "7.84.0"
-  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-7.84.0.tgz#01d33fc452044ffd8ea57b20f60304b9cfa2b9e1"
-  integrity sha512-tbuwunbBx2kSex15IHCqHDnrMfIlqPc6w/76fwkGqokz3oh9GSEGlLICwmBWL8AypWimUg13IDtFpD0TJTriWA==
-  dependencies:
-    "@sentry/types" "7.84.0"
-    "@sentry/utils" "7.84.0"
-
 "@sentry/core@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry/core/-/core-7.99.0.tgz"
@@ -304,16 +587,129 @@
     "@sentry/types" "7.99.0"
     "@sentry/utils" "7.99.0"
 
-"@sentry/node@7.84.0":
-  version "7.84.0"
-  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-7.84.0.tgz#c06167106796b2b83c0a9b52fa56f8ca820034ca"
-  integrity sha512-Xm3fIXT3TZOQi+6uQBavI8iOehD3PkY7v0y3hog0d4lQTH88vQK9BBsI+jZEq81Em+RG/u7vZNiFo6YMTnWF7Q==
-  dependencies:
-    "@sentry-internal/tracing" "7.84.0"
-    "@sentry/core" "7.84.0"
-    "@sentry/types" "7.84.0"
-    "@sentry/utils" "7.84.0"
-    https-proxy-agent "^5.0.0"
+"@sentry/core@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-8.29.0.tgz#52032ece2d7b60f3775f10189c27e26b1cebdbca"
+  integrity sha512-scMbZaJ0Ov8NPgWn86EdjhyTLrhvRVbTxjg0imJAvhIvRbblH3xyqye/17Qnk2fOp8TNDOl7TBZHi0NCFQ5HUw==
+  dependencies:
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
+
+"@sentry/core@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/core/-/core-8.32.0.tgz#7c4b74afa7a15bd31f5e6881aac82ccfd753e1d6"
+  integrity sha512-+xidTr0lZ0c755tq4k75dXPEb8PA+qvIefW3U9+dQMORLokBrYoKYMf5zZTG2k/OfSJS6OSxatUj36NFuCs3aA==
+  dependencies:
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+
+"@sentry/node@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.29.0.tgz#6e462b8802356a630c56733dc795a4035464c4ab"
+  integrity sha512-RCKpWR6DUWmlxtms10MRXwJZRrFt1a2P38FjwEEahcdcK1R6wB8GPf0GO4JnJAiw6oeM0MERSqLIcSLT8+FxtA==
+  dependencies:
+    "@opentelemetry/api" "^1.9.0"
+    "@opentelemetry/context-async-hooks" "^1.25.1"
+    "@opentelemetry/core" "^1.25.1"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/instrumentation-connect" "0.39.0"
+    "@opentelemetry/instrumentation-express" "0.42.0"
+    "@opentelemetry/instrumentation-fastify" "0.39.0"
+    "@opentelemetry/instrumentation-fs" "0.15.0"
+    "@opentelemetry/instrumentation-generic-pool" "0.39.0"
+    "@opentelemetry/instrumentation-graphql" "0.43.0"
+    "@opentelemetry/instrumentation-hapi" "0.41.0"
+    "@opentelemetry/instrumentation-http" "0.53.0"
+    "@opentelemetry/instrumentation-ioredis" "0.43.0"
+    "@opentelemetry/instrumentation-koa" "0.43.0"
+    "@opentelemetry/instrumentation-mongodb" "0.47.0"
+    "@opentelemetry/instrumentation-mongoose" "0.42.0"
+    "@opentelemetry/instrumentation-mysql" "0.41.0"
+    "@opentelemetry/instrumentation-mysql2" "0.41.0"
+    "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
+    "@opentelemetry/instrumentation-pg" "0.44.0"
+    "@opentelemetry/instrumentation-redis-4" "0.42.0"
+    "@opentelemetry/resources" "^1.25.1"
+    "@opentelemetry/sdk-trace-base" "^1.25.1"
+    "@opentelemetry/semantic-conventions" "^1.25.1"
+    "@prisma/instrumentation" "5.19.1"
+    "@sentry/core" "8.29.0"
+    "@sentry/opentelemetry" "8.29.0"
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
+    import-in-the-middle "^1.11.0"
+  optionalDependencies:
+    opentelemetry-instrumentation-fetch-node "1.2.3"
+
+"@sentry/node@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/node/-/node-8.32.0.tgz#68822b3246fb2ed7418f21795ed539a18058cfa8"
+  integrity sha512-a2PoFA9j/HmJVGF/zXJhLP6QhRHGye/2EznQdHOELsH1BkeMgBaXl7D52r2E/b7qki647lXrdbspB6jid8NycA==
+  dependencies:
+    "@opentelemetry/api" "^1.9.0"
+    "@opentelemetry/context-async-hooks" "^1.25.1"
+    "@opentelemetry/core" "^1.25.1"
+    "@opentelemetry/instrumentation" "^0.53.0"
+    "@opentelemetry/instrumentation-amqplib" "^0.42.0"
+    "@opentelemetry/instrumentation-connect" "0.39.0"
+    "@opentelemetry/instrumentation-dataloader" "0.12.0"
+    "@opentelemetry/instrumentation-express" "0.42.0"
+    "@opentelemetry/instrumentation-fastify" "0.39.0"
+    "@opentelemetry/instrumentation-fs" "0.15.0"
+    "@opentelemetry/instrumentation-generic-pool" "0.39.0"
+    "@opentelemetry/instrumentation-graphql" "0.43.0"
+    "@opentelemetry/instrumentation-hapi" "0.41.0"
+    "@opentelemetry/instrumentation-http" "0.53.0"
+    "@opentelemetry/instrumentation-ioredis" "0.43.0"
+    "@opentelemetry/instrumentation-kafkajs" "0.3.0"
+    "@opentelemetry/instrumentation-koa" "0.43.0"
+    "@opentelemetry/instrumentation-mongodb" "0.47.0"
+    "@opentelemetry/instrumentation-mongoose" "0.42.0"
+    "@opentelemetry/instrumentation-mysql" "0.41.0"
+    "@opentelemetry/instrumentation-mysql2" "0.41.0"
+    "@opentelemetry/instrumentation-nestjs-core" "0.40.0"
+    "@opentelemetry/instrumentation-pg" "0.44.0"
+    "@opentelemetry/instrumentation-redis-4" "0.42.0"
+    "@opentelemetry/instrumentation-undici" "0.6.0"
+    "@opentelemetry/resources" "^1.26.0"
+    "@opentelemetry/sdk-trace-base" "^1.26.0"
+    "@opentelemetry/semantic-conventions" "^1.27.0"
+    "@prisma/instrumentation" "5.19.1"
+    "@sentry/core" "8.32.0"
+    "@sentry/opentelemetry" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+    import-in-the-middle "^1.11.0"
+
+"@sentry/opentelemetry@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.29.0.tgz#6ae54c640155925fc42ac86f37d125f9bb983794"
+  integrity sha512-MtfjDMUuKFYlyw9hZohp9xnphz+6QosyHb2zCV3e/fANoA53FDxmg/Co7haMohUCiOwwJPytUmSQQaP0nyL2Uw==
+  dependencies:
+    "@sentry/core" "8.29.0"
+    "@sentry/types" "8.29.0"
+    "@sentry/utils" "8.29.0"
+
+"@sentry/opentelemetry@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/opentelemetry/-/opentelemetry-8.32.0.tgz#4af02c17102635e4b34942d2e82d3620ddb7d95a"
+  integrity sha512-YCD8EnwJJ2ab3zWWtu5VrvHP/6Ss6GGQH0TYx2cfeGG3c0wTA/5zYx9JR4i3hUtOh1pifN34HlY0yyQHD4yctg==
+  dependencies:
+    "@sentry/core" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+
+"@sentry/profiling-node@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/profiling-node/-/profiling-node-8.32.0.tgz#cb4bf0512dc7a6f0a9058529f3c4dbb8963a597d"
+  integrity sha512-wKE2JAvDM3DjVNFKd2YLzwhXFS3SurLxDPpvA1EjMQ9Me7sR5ssO9jFn3e6et5oT3e3EzGDyTfbrJ81BNQuZhQ==
+  dependencies:
+    "@sentry/core" "8.32.0"
+    "@sentry/node" "8.32.0"
+    "@sentry/types" "8.32.0"
+    "@sentry/utils" "8.32.0"
+    detect-libc "^2.0.2"
+    node-abi "^3.61.0"
 
 "@sentry/tracing@^7.84.0":
   version "7.99.0"
@@ -322,22 +718,20 @@
   dependencies:
     "@sentry-internal/tracing" "7.99.0"
 
-"@sentry/types@7.84.0":
-  version "7.84.0"
-  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-7.84.0.tgz#e8db86c36c61659c3b2558f0aa8b6a073a756117"
-  integrity sha512-VqGLIF3JOUrk7yIXjLXJvAORkZL1e3dDX0Q1okRehwyt/5CRE+mdUTeJZkBo9P9mBwgMyvtwklzOGGrzjb4eMA==
-
 "@sentry/types@7.99.0":
   version "7.99.0"
   resolved "https://registry.npmjs.org/@sentry/types/-/types-7.99.0.tgz"
   integrity sha512-94qwOw4w40sAs5mCmzcGyj8ZUu/KhnWnuMZARRq96k+SjRW/tHFAOlIdnFSrt3BLPvSOK7R3bVAskZQ0N4FTmA==
 
-"@sentry/utils@7.84.0":
-  version "7.84.0"
-  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-7.84.0.tgz#32861d922fa31e86dd2863a1d9dfc5a369e98952"
-  integrity sha512-qdUVuxnRBvaf05AU+28R+xYtZmi/Ymf8os3Njq9g4XuA+QEkZLbzmIpRK5W9Ja7vUtjOeg29Xgg43A8znde9LQ==
-  dependencies:
-    "@sentry/types" "7.84.0"
+"@sentry/types@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.29.0.tgz#c19e43524b8e7766028f4da8f02eddcc33518541"
+  integrity sha512-j4gX3ctzgD4xVWllXAhm6M+kHFEvrFoUPFq60X/pgkjsWCocGuhtNfB0rW43ICG8hCnlz8IYl7O7b8V8qY7SPg==
+
+"@sentry/types@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/types/-/types-8.32.0.tgz#dfd8aa9449a5f793b9c720888819a74a11f1790d"
+  integrity sha512-hxckvN2MzS5SgGDgVQ0/QpZXk13Vrq4BtZLwXhPhyeTmZtUiUfWvcL5TFQqLinfKdTKPe9q2MxeAJ0D4LalhMg==
 
 "@sentry/utils@7.99.0":
   version "7.99.0"
@@ -346,6 +740,20 @@
   dependencies:
     "@sentry/types" "7.99.0"
 
+"@sentry/utils@8.29.0":
+  version "8.29.0"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.29.0.tgz#d4a36643369e30ba62ef8f40f149420a100f64bb"
+  integrity sha512-nb93/m3SjQChQJFqJj3oNW3Rz/12yrT7jypTCire3c2hpYWG2uR5n8VY9UUMTA6HLNvdom6tckK7p3bXGXlF0w==
+  dependencies:
+    "@sentry/types" "8.29.0"
+
+"@sentry/utils@8.32.0":
+  version "8.32.0"
+  resolved "https://registry.yarnpkg.com/@sentry/utils/-/utils-8.32.0.tgz#99a4298ee8fd7208ade470931c19d71c571dfce8"
+  integrity sha512-t1WVERhgmYURxbBj9J4/H2P2X+VKqm7B3ce9iQyrZbdf5NekhcU4jHIecPUWCPHjQkFIqkVTorqeBmDTlg/UmQ==
+  dependencies:
+    "@sentry/types" "8.32.0"
+
 "@tsconfig/node10@^1.0.7":
   version "1.0.9"
   resolved "https://registry.npmjs.org/@tsconfig/node10/-/node10-1.0.9.tgz"
@@ -386,6 +794,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/connect@3.4.36":
+  version "3.4.36"
+  resolved "https://registry.yarnpkg.com/@types/connect/-/connect-3.4.36.tgz#e511558c15a39cb29bd5357eebb57bd1459cd1ab"
+  integrity sha512-P63Zd/JUGq+PdrM1lv0Wv5SBYeA2+CORvbrXbngriYY0jzLUWfQMQQxOhjONEz/wlHOAxOdY7CY65rgQdTjq2w==
+  dependencies:
+    "@types/node" "*"
+
 "@types/cors@^2.8.17":
   version "2.8.17"
   resolved "https://registry.npmjs.org/@types/cors/-/cors-2.8.17.tgz"
@@ -457,6 +872,13 @@
   dependencies:
     "@types/node" "*"
 
+"@types/mysql@2.15.26":
+  version "2.15.26"
+  resolved "https://registry.yarnpkg.com/@types/mysql/-/mysql-2.15.26.tgz#f0de1484b9e2354d587e7d2bd17a873cc8300836"
+  integrity sha512-DSLCOXhkvfS5WNNPbfn2KdICAmk8lLc+/PNvnPnF7gOdMZCxopXduqv0OQ13y/yA/zXTSikZZqVgybUxOEg6YQ==
+  dependencies:
+    "@types/node" "*"
+
 "@types/node@*":
   version "20.11.13"
   resolved "https://registry.npmjs.org/@types/node/-/node-20.11.13.tgz"
@@ -469,6 +891,31 @@
   resolved "https://registry.npmjs.org/@types/parse-json/-/parse-json-4.0.2.tgz"
   integrity sha512-dISoDXWWQwUquiKsyZ4Ng+HX2KsPL7LyHKHQwgGFEA3IaKac4Obd+h2a/a6waisAoepJlBcx9paWqjA8/HVjCw==
 
+"@types/pg-pool@2.0.6":
+  version "2.0.6"
+  resolved "https://registry.yarnpkg.com/@types/pg-pool/-/pg-pool-2.0.6.tgz#1376d9dc5aec4bb2ec67ce28d7e9858227403c77"
+  integrity sha512-TaAUE5rq2VQYxab5Ts7WZhKNmuN78Q6PiFonTDdpbx8a1H0M1vhy3rhiMjl+e2iHmogyMw7jZF4FrE6eJUy5HQ==
+  dependencies:
+    "@types/pg" "*"
+
+"@types/pg@*":
+  version "8.11.10"
+  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.11.10.tgz#b8fb2b2b759d452fe3ec182beadd382563b63291"
+  integrity sha512-LczQUW4dbOQzsH2RQ5qoeJ6qJPdrcM/DcMLoqWQkMLMsq83J5lAX3LXjdkWdpscFy67JSOWDnh7Ny/sPFykmkg==
+  dependencies:
+    "@types/node" "*"
+    pg-protocol "*"
+    pg-types "^4.0.1"
+
+"@types/pg@8.6.1":
+  version "8.6.1"
+  resolved "https://registry.yarnpkg.com/@types/pg/-/pg-8.6.1.tgz#099450b8dc977e8197a44f5229cedef95c8747f9"
+  integrity sha512-1Kc4oAGzAl7uqUStZCDvaLFqZrW9qWSjXOmBfdgyBP5La7Us6Mg4GBvRlSoaZMhQF/zSj1C8CtKMBkoiT8eL8w==
+  dependencies:
+    "@types/node" "*"
+    pg-protocol "*"
+    pg-types "^2.2.0"
+
 "@types/pg@^8.10.9":
   version "8.11.0"
   resolved "https://registry.npmjs.org/@types/pg/-/pg-8.11.0.tgz"
@@ -510,6 +957,11 @@
     "@types/mime" "*"
     "@types/node" "*"
 
+"@types/shimmer@^1.0.2", "@types/shimmer@^1.2.0":
+  version "1.2.0"
+  resolved "https://registry.yarnpkg.com/@types/shimmer/-/shimmer-1.2.0.tgz#9b706af96fa06416828842397a70dfbbf1c14ded"
+  integrity sha512-UE7oxhQLLd9gub6JKIAhDq06T0F6FnztwMNRvYgjeQSBeMc1ZG/tA47EwfduvkuQS8apbkM/lpLpWsaCeYsXVg==
+
 "@types/strip-bom@^3.0.0":
   version "3.0.0"
   resolved "https://registry.npmjs.org/@types/strip-bom/-/strip-bom-3.0.0.tgz"
@@ -627,6 +1079,16 @@ accepts@~1.3.8:
     mime-types "~2.1.34"
     negotiator "0.6.3"
 
+acorn-import-assertions@^1.9.0:
+  version "1.9.0"
+  resolved "https://registry.yarnpkg.com/acorn-import-assertions/-/acorn-import-assertions-1.9.0.tgz#507276249d684797c84e0734ef84860334cfb1ac"
+  integrity sha512-cmMwop9x+8KFhxvKrKfPYmN6/pKTYYHBqLa0DfvVZcKMJWNyWLnaqND7dx/qn66R7ewM1UX5XMaDVP5wlVTaVA==
+
+acorn-import-attributes@^1.9.5:
+  version "1.9.5"
+  resolved "https://registry.yarnpkg.com/acorn-import-attributes/-/acorn-import-attributes-1.9.5.tgz#7eb1557b1ba05ef18b5ed0ec67591bfab04688ef"
+  integrity sha512-n02Vykv5uA3eHGM/Z2dQrcD56kL8TyDb2p1+0P83PClMnC/nc+anbQRhIOWnSq4Ke/KvDPrY3C9hDtC/A3eHnQ==
+
 acorn-jsx@^5.3.2:
   version "5.3.2"
   resolved "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.3.2.tgz"
@@ -642,12 +1104,10 @@ acorn@^8.4.1, acorn@^8.9.0:
   resolved "https://registry.npmjs.org/acorn/-/acorn-8.11.3.tgz"
   integrity sha512-Y9rRfJG5jcKOE0CLisYbojUjIrIEE7AGMzA/Sm4BslANhbS+cDMpgBdcPT91oJ7OuJ9hYJBx59RjbhxVnrF8Xg==
 
-agent-base@6:
-  version "6.0.2"
-  resolved "https://registry.yarnpkg.com/agent-base/-/agent-base-6.0.2.tgz#49fff58577cfee3f37176feab4c22e00f86d7f77"
-  integrity sha512-RZNwNclF7+MS/8bDg70amg32dyeZGZxiDuQmZxKLAlQjr3jGyLx+4Kkk58UO7D2QdgFIQCovuSuZESne6RG6XQ==
-  dependencies:
-    debug "4"
+acorn@^8.8.2:
+  version "8.12.1"
+  resolved "https://registry.yarnpkg.com/acorn/-/acorn-8.12.1.tgz#71616bdccbe25e27a54439e0046e89ca76df2248"
+  integrity sha512-tcpGyI9zbizT9JbV6oYE477V6mTlXvvi0T0G3SNIYE2apm/G5huBa1+K89VGeovbg+jycCrfhl3ADxErOuO6Jg==
 
 aggregate-error@^3.0.0:
   version "3.1.0"
@@ -1049,6 +1509,11 @@ chokidar@3.5.3, chokidar@^3.5.1, chokidar@^3.5.2:
   optionalDependencies:
     fsevents "~2.3.2"
 
+cjs-module-lexer@^1.2.2:
+  version "1.4.1"
+  resolved "https://registry.yarnpkg.com/cjs-module-lexer/-/cjs-module-lexer-1.4.1.tgz#707413784dbb3a72aa11c2f2b042a0bef4004170"
+  integrity sha512-cuSVIHi9/9E/+821Qjdvngor+xpnlwnuwIyZOaLmHBVdXL+gP+I6QQB9VkO7RI77YIcTV+S1W9AreJ5eN63JBA==
+
 clean-stack@^2.0.0:
   version "2.2.0"
   resolved "https://registry.npmjs.org/clean-stack/-/clean-stack-2.2.0.tgz"
@@ -1207,13 +1672,6 @@ debug@2.6.9:
   dependencies:
     ms "2.0.0"
 
-debug@4:
-  version "4.3.7"
-  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
-  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
-  dependencies:
-    ms "^2.1.3"
-
 debug@4.3.4, debug@^4, debug@^4.3.1, debug@^4.3.2, debug@^4.3.4:
   version "4.3.4"
   resolved "https://registry.npmjs.org/debug/-/debug-4.3.4.tgz"
@@ -1228,6 +1686,13 @@ debug@^3.2.7:
   dependencies:
     ms "^2.1.1"
 
+debug@^4.3.5:
+  version "4.3.7"
+  resolved "https://registry.yarnpkg.com/debug/-/debug-4.3.7.tgz#87945b4151a011d76d95a198d7111c865c360a52"
+  integrity sha512-Er2nc/H7RrMXZBFCEim6TCmMk02Z8vLC2Rbi1KEBggpo0fS6l0S1nnapwmIi3yW/+GOJap1Krg4w0Hg80oCqgQ==
+  dependencies:
+    ms "^2.1.3"
+
 decamelize@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/decamelize/-/decamelize-4.0.0.tgz"
@@ -1307,6 +1772,11 @@ detect-libc@^2.0.1:
   resolved "https://registry.npmjs.org/detect-libc/-/detect-libc-2.0.2.tgz"
   integrity sha512-UX6sGumvvqSaXgdKGUsgZWqcUyIXZ/vZTrlRT/iobiKhGL0zL4d3osHj3uqllWJK+i+sixDS/3COVEOFbupFyw==
 
+detect-libc@^2.0.2:
+  version "2.0.3"
+  resolved "https://registry.yarnpkg.com/detect-libc/-/detect-libc-2.0.3.tgz#f0cd503b40f9939b894697d19ad50895e30cf700"
+  integrity sha512-bwy0MGW55bG41VqxxypOsdSdGqLwXPI/focwgTYCFMbdUiBAxLg9CFzG08sz2aqzknwiX7Hkl0bQENjg8iLByw==
+
 diff@5.0.0:
   version "5.0.0"
   resolved "https://registry.npmjs.org/diff/-/diff-5.0.0.tgz"
@@ -2171,14 +2641,6 @@ http-errors@2.0.0:
     statuses "2.0.1"
     toidentifier "1.0.1"
 
-https-proxy-agent@^5.0.0:
-  version "5.0.1"
-  resolved "https://registry.yarnpkg.com/https-proxy-agent/-/https-proxy-agent-5.0.1.tgz#c59ef224a04fe8b754f3db0063a25ea30d0005d6"
-  integrity sha512-dFcAjpTQFgoLMzC2VwU+C/CbS7uRL0lWmxDITmqm7C+7F0Odmj6s9l6alZc6AELXhrnggM2CeWSXHGOdX2YtwA==
-  dependencies:
-    agent-base "6"
-    debug "4"
-
 human-signals@^1.1.1:
   version "1.1.1"
   resolved "https://registry.npmjs.org/human-signals/-/human-signals-1.1.1.tgz"
@@ -2219,6 +2681,26 @@ import-fresh@^3.2.1:
     parent-module "^1.0.0"
     resolve-from "^4.0.0"
 
+import-in-the-middle@1.7.1:
+  version "1.7.1"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.7.1.tgz#3e111ff79c639d0bde459bd7ba29dd9fdf357364"
+  integrity sha512-1LrZPDtW+atAxH42S6288qyDFNQ2YCty+2mxEPRtfazH6Z5QwkaBSTS2ods7hnVJioF6rkRfNoA6A/MstpFXLg==
+  dependencies:
+    acorn "^8.8.2"
+    acorn-import-assertions "^1.9.0"
+    cjs-module-lexer "^1.2.2"
+    module-details-from-path "^1.0.3"
+
+import-in-the-middle@^1.11.0, import-in-the-middle@^1.8.1:
+  version "1.11.2"
+  resolved "https://registry.yarnpkg.com/import-in-the-middle/-/import-in-the-middle-1.11.2.tgz#dd848e72b63ca6cd7c34df8b8d97fc9baee6174f"
+  integrity sha512-gK6Rr6EykBcc6cVWRSBR5TWf8nn6hZMYSRYqCcHa0l0d1fPK7JSYo6+Mlmck76jIX9aL/IZ71c06U2VpFwl1zA==
+  dependencies:
+    acorn "^8.8.2"
+    acorn-import-attributes "^1.9.5"
+    cjs-module-lexer "^1.2.2"
+    module-details-from-path "^1.0.3"
+
 imurmurhash@^0.1.4:
   version "0.1.4"
   resolved "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz"
@@ -2854,6 +3336,11 @@ mocha@^10.2.0:
     yargs-parser "20.2.4"
     yargs-unparser "2.0.0"
 
+module-details-from-path@^1.0.3:
+  version "1.0.3"
+  resolved "https://registry.yarnpkg.com/module-details-from-path/-/module-details-from-path-1.0.3.tgz#114c949673e2a8a35e9d35788527aa37b679da2b"
+  integrity sha512-ySViT69/76t8VhE1xXHK6Ch4NcDd26gx0MzKXLO+F7NOtnqH68d9zF94nT8ZWSxXh8ELOERsnJO/sWt1xZYw5A==
+
 morgan@^1.10.0:
   version "1.10.0"
   resolved "https://registry.npmjs.org/morgan/-/morgan-1.10.0.tgz"
@@ -2905,6 +3392,13 @@ nice-try@^1.0.4:
   resolved "https://registry.npmjs.org/nice-try/-/nice-try-1.0.5.tgz"
   integrity sha512-1nh45deeb5olNY7eX82BkPO7SSxR5SSYJiPTrTdFUVYwAl8CKMA5N9PjTYkHiRjisVcxcQ1HXdLhx2qxxJzLNQ==
 
+node-abi@^3.61.0:
+  version "3.68.0"
+  resolved "https://registry.yarnpkg.com/node-abi/-/node-abi-3.68.0.tgz#8f37fb02ecf4f43ebe694090dcb52e0c4cc4ba25"
+  integrity sha512-7vbj10trelExNjFSBm5kTvZXXa7pZyKWx9RCKIyqe6I9Ev3IzGpQoqBP3a+cOdxY+pWj6VkP28n/2wWysBHD/A==
+  dependencies:
+    semver "^7.3.5"
+
 node-domexception@^1.0.0:
   version "1.0.0"
   resolved "https://registry.yarnpkg.com/node-domexception/-/node-domexception-1.0.0.tgz#6888db46a1f71c0b76b3f7555016b63fe64766e5"
@@ -3090,6 +3584,14 @@ onetime@^5.1.0, onetime@^5.1.2:
   dependencies:
     mimic-fn "^2.1.0"
 
+opentelemetry-instrumentation-fetch-node@1.2.3:
+  version "1.2.3"
+  resolved "https://registry.yarnpkg.com/opentelemetry-instrumentation-fetch-node/-/opentelemetry-instrumentation-fetch-node-1.2.3.tgz#beb24048bdccb1943ba2a5bbadca68020e448ea7"
+  integrity sha512-Qb11T7KvoCevMaSeuamcLsAD+pZnavkhDnlVL0kRozfhl42dKG5Q3anUklAFKJZjY3twLR+BnRa6DlwwkIE/+A==
+  dependencies:
+    "@opentelemetry/instrumentation" "^0.46.0"
+    "@opentelemetry/semantic-conventions" "^1.17.0"
+
 optionator@^0.9.3:
   version "0.9.3"
   resolved "https://registry.npmjs.org/optionator/-/optionator-0.9.3.tgz"
@@ -3262,9 +3764,9 @@ pg-protocol@*, pg-protocol@^1.6.0:
   resolved "https://registry.npmjs.org/pg-protocol/-/pg-protocol-1.6.0.tgz"
   integrity sha512-M+PDm637OY5WM307051+bsDia5Xej6d9IR4GwJse1qA1DIhiKlksvrneZOYQq42OM+spubpcNYEo2FcKQrDk+Q==
 
-pg-types@^2.1.0:
+pg-types@^2.1.0, pg-types@^2.2.0:
   version "2.2.0"
-  resolved "https://registry.npmjs.org/pg-types/-/pg-types-2.2.0.tgz"
+  resolved "https://registry.yarnpkg.com/pg-types/-/pg-types-2.2.0.tgz#2d0250d636454f7cfa3b6ae0382fdfa8063254a3"
   integrity sha512-qTAAlrEsl8s4OiEQY69wDvcMIdQN6wdz5ojQiOy6YRMuynxenON0O5oCpJI6lshc6scgAY8qvJ2On/p+CXY0GA==
   dependencies:
     pg-int8 "1.0.1"
@@ -3622,14 +4124,23 @@ require-directory@^2.1.1:
   resolved "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz"
   integrity sha512-fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q==
 
+require-in-the-middle@^7.1.1:
+  version "7.4.0"
+  resolved "https://registry.yarnpkg.com/require-in-the-middle/-/require-in-the-middle-7.4.0.tgz#606977820d4b5f9be75e5a108ce34cfed25b3bb4"
+  integrity sha512-X34iHADNbNDfr6OTStIAHWSAvvKQRYgLO6duASaVf7J2VA3lvmNYboAHOuLC2huav1IwgZJtyEcJCKVzFxOSMQ==
+  dependencies:
+    debug "^4.3.5"
+    module-details-from-path "^1.0.3"
+    resolve "^1.22.8"
+
 resolve-from@^4.0.0:
   version "4.0.0"
   resolved "https://registry.npmjs.org/resolve-from/-/resolve-from-4.0.0.tgz"
   integrity sha512-pb/MYmXstAkysRFx8piNI1tGFNQIFA3vkE3Gq4EuA1dF6gHp/+vgZqsCGJapvy8N3Q+4o7FwvquPJcnZ7RYy4g==
 
-resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4:
+resolve@^1.0.0, resolve@^1.10.0, resolve@^1.22.4, resolve@^1.22.8:
   version "1.22.8"
-  resolved "https://registry.npmjs.org/resolve/-/resolve-1.22.8.tgz"
+  resolved "https://registry.yarnpkg.com/resolve/-/resolve-1.22.8.tgz#b6c87a9f2aa06dfab52e3d70ac8cde321fa5a48d"
   integrity sha512-oKWePCxqpd6FlLvGV1VU0x7bkPmmCNolxzjMf4NczoDnQcIWrAF+cPtZn5i6n+RfD2d9i0tzpKnG6Yk168yIyw==
   dependencies:
     is-core-module "^2.13.0"
@@ -3753,6 +4264,11 @@ semver@^6.3.1:
   resolved "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz"
   integrity sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==
 
+semver@^7.3.5, semver@^7.5.2:
+  version "7.6.3"
+  resolved "https://registry.yarnpkg.com/semver/-/semver-7.6.3.tgz#980f7b5550bc175fb4dc09403085627f9eb33143"
+  integrity sha512-oVekP1cKtI+CTDvHWYFUcMtsK/00wmAEfyqKfNdARm8u1wNVhSgaX7A8d4UuIlUI5e84iEwOhs7ZPYRmzU9U6A==
+
 semver@^7.5.3, semver@^7.5.4:
   version "7.5.4"
   resolved "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz"
@@ -3855,6 +4371,11 @@ shell-quote@^1.6.1:
   resolved "https://registry.npmjs.org/shell-quote/-/shell-quote-1.8.1.tgz"
   integrity sha512-6j1W9l1iAs/4xYBI1SYOVZyFcCis9b4KCLQ8fgAGG07QvzaRLVVRQvAy85yNmmZSjYjg4MWh4gNvlPujU/5LpA==
 
+shimmer@^1.2.1:
+  version "1.2.1"
+  resolved "https://registry.yarnpkg.com/shimmer/-/shimmer-1.2.1.tgz#610859f7de327b587efebf501fb43117f9aff337"
+  integrity sha512-sQTKC1Re/rM6XyFM6fIAGHRPVGvyXfgzIDvzoq608vM+jeyVD0Tu1E6Np0Kc2zAIFWIj963V2800iF/9LPieQw==
+
 side-channel@^1.0.4:
   version "1.0.4"
   resolved "https://registry.npmjs.org/side-channel/-/side-channel-1.0.4.tgz"

From 8558d1037c361ef9dbe4619c768c07dc6981e1c3 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 09:30:44 -0500
Subject: [PATCH 75/81] fix logger transport

---
 desci-repo/src/logger.ts | 32 +++++++++++++-------------------
 1 file changed, 13 insertions(+), 19 deletions(-)

diff --git a/desci-repo/src/logger.ts b/desci-repo/src/logger.ts
index d00ad9d6b..2589555a6 100644
--- a/desci-repo/src/logger.ts
+++ b/desci-repo/src/logger.ts
@@ -43,7 +43,7 @@ function logMethodHooks(inputArgs, method) {
         callerFilePath = intermediate
           .split('(')[1]
           .split(')')[0]
-          .replace('file:///app/desci-server/src/', '')
+          .replace('file:///app/desci-repo/src/', '')
           .replace('file:///app/dist/', '');
       }
     } catch (err) {
@@ -89,6 +89,8 @@ function logMethodHooks(inputArgs, method) {
   }
 }
 
+const IS_PROD = process.env.NODE_ENV === 'production';
+
 export const logger = pino({
   level: logLevel,
   serializers: {
@@ -97,12 +99,13 @@ export const logger = pino({
   hooks: {
     logMethod: logMethodHooks,
   },
-  transport:
-    process.env.NODE_ENV === 'production'
-      ? { targets: [] }
-      : {
+  ...(!IS_PROD
+    ? {
+        transport: {
           targets: [devTransport, fileTransport],
         },
+      }
+    : {}),
   redact: {
     paths: [
       'req.headers.cookie',
@@ -137,25 +140,16 @@ function omitBuffer(array) {
 }
 
 type RejectionPayload = {
-  reason: unknown,
-  promise: Promise<unknown>,
+  reason: unknown;
+  promise: Promise<unknown>;
 };
 
-const shutdownNicely = async (
-  err: Error | RejectionPayload,
-  kind: string
-): Promise<void> => {
+const shutdownNicely = async (err: Error | RejectionPayload, kind: string): Promise<void> => {
   await pool.end();
   logger.fatal(err, kind);
   process.exit(1);
 };
 
-process.on(
-  'uncaughtException',
-  e => shutdownNicely(e, 'uncaughtException')
-);
+process.on('uncaughtException', (e) => shutdownNicely(e, 'uncaughtException'));
 
-process.on(
-  'unhandledRejection',
-  (reason, promise) => shutdownNicely({ reason, promise }, 'unhandledRejection')
-);
+process.on('unhandledRejection', (reason, promise) => shutdownNicely({ reason, promise }, 'unhandledRejection'));

From 434005e7d27cde348240536b05311df8d38ff1ae Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Tue, 8 Oct 2024 11:28:48 -0500
Subject: [PATCH 76/81] remove call to find and update node in repo service

---
 desci-repo/src/controllers/nodes/documents.ts | 30 +++++++++----------
 .../src/controllers/nodes/draftCreate.ts      |  1 +
 2 files changed, 16 insertions(+), 15 deletions(-)

diff --git a/desci-repo/src/controllers/nodes/documents.ts b/desci-repo/src/controllers/nodes/documents.ts
index 3d23f3e6e..dc72aeb44 100644
--- a/desci-repo/src/controllers/nodes/documents.ts
+++ b/desci-repo/src/controllers/nodes/documents.ts
@@ -35,26 +35,26 @@ export const createNodeDocument = async function (req: Request, res: Response) {
       { message: 'Init Document', time: Date.now() },
     );
 
-    logger.info({ peerId: backendRepo.networkSubsystem.peerId, uuid }, 'Document Created');
+    logger.trace({ peerId: backendRepo.networkSubsystem.peerId, uuid }, 'Document Created');
 
-    const document = await handle.doc();
+    // const document = await handle.doc();
 
-    logger.trace({ document: !!document }, 'Document Retrieved');
+    logger.trace({ handleReady: handle.isReady() }, 'Document Retrieved');
 
-    const node = await findNodeByUuid(uuid);
-    logger.trace({ node }, 'Node Retrieved');
+    // const node = await findNodeByUuid(uuid);
+    // logger.trace({ node }, 'Node Retrieved');
     // await prisma.node.update({ where: { id: node.id }, data: { manifestDocumentId: handle.documentId } });
-    const result = await query('UPDATE "Node" SET "manifestDocumentId" = $1 WHERE uuid = $2', [
-      handle.documentId,
-      uuid,
-    ]);
-
-    logger.trace(
-      { node, uuid, documentId: handle.documentId, url: handle.url, isReady: handle.isReady() },
-      'Node Updated',
-    );
+    // const result = await query('UPDATE "Node" SET "manifestDocumentId" = $1 WHERE uuid = $2', [
+    //   handle.documentId,
+    //   uuid,
+    // ]);
+
+    // logger.trace(
+    //   { node, uuid, documentId: handle.documentId, url: handle.url, isReady: handle.isReady() },
+    //   'Node Updated',
+    // );
 
-    logger.info({ result }, 'UPDATE DOCUMENT ID');
+    // logger.info({ result }, 'UPDATE DOCUMENT ID');
 
     res.status(200).send({ ok: true, documentId: handle.documentId, document });
 
diff --git a/desci-server/src/controllers/nodes/draftCreate.ts b/desci-server/src/controllers/nodes/draftCreate.ts
index cc013a0a0..16d3585ab 100755
--- a/desci-server/src/controllers/nodes/draftCreate.ts
+++ b/desci-server/src/controllers/nodes/draftCreate.ts
@@ -129,6 +129,7 @@ export const draftCreate = async (req: Request, res: Response, next: NextFunctio
     const documentId = result.documentId;
     const document = result.document;
 
+    // attach automerge documentId to node
     await prisma.node.update({ where: { id: node.id }, data: { manifestDocumentId: documentId } });
 
     logger.info({ uuid: node.uuid, documentId }, 'Automerge document created');

From 9b7b179aacb964e3003ed6e8b31372bf6520c7a2 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Wed, 9 Oct 2024 04:18:06 -0500
Subject: [PATCH 77/81] identify potential bottlenecks to optimize

---
 desci-server/src/controllers/nodes/show.ts | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

diff --git a/desci-server/src/controllers/nodes/show.ts b/desci-server/src/controllers/nodes/show.ts
index 7e3488043..3263ff27d 100755
--- a/desci-server/src/controllers/nodes/show.ts
+++ b/desci-server/src/controllers/nodes/show.ts
@@ -87,12 +87,20 @@ export const show = async (req: RequestWithNode, res: Response, next: NextFuncti
     try {
       gatewayUrl = cleanupManifestUrl(gatewayUrl, req.query?.g as string);
       logger.trace({ gatewayUrl, uuid }, 'transforming manifest');
-      (discovery as any).manifestData = transformManifestWithHistory((await axios.get(gatewayUrl)).data, discovery);
+
+      // this can take >30s before it resolves or
+      // even fail after a much longer time there by causing the slow loading of nodes
+      // and a lot of failing `*.loggedIn` test in
+      (discovery as any).manifestData = transformManifestWithHistory(
+        (await axios.get(gatewayUrl, { timeout: 2000 })).data,
+        discovery,
+      );
       // Add draft manifest document
       const nodeUuid = ensureUuidEndsWithDot(uuid) as NodeUuid;
+      // for draft nodes we can do this asynchronously on the frontend
       const manifest = await repoService.getDraftManifest(nodeUuid);
 
-      logger.info({ manifest }, '[SHOW API GET DRAFT MANIFEST]');
+      logger.info({ manifest: !!manifest }, '[SHOW API GET DRAFT MANIFEST]');
 
       if (manifest) (discovery as any).manifestData = transformManifestWithHistory(manifest, discovery);
       delete (discovery as any).restBody;

From 791f76e98606bf9bc3a9174662d7f56b79a1eacb Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Wed, 9 Oct 2024 06:33:25 -0500
Subject: [PATCH 78/81] optimize createDraft and show draft nodes api

---
 desci-repo/src/controllers/nodes/documents.ts |  7 +-
 desci-repo/src/logger.ts                      | 17 ++---
 desci-server/src/controllers/data/retrieve.ts |  3 +-
 .../src/controllers/nodes/draftCreate.ts      |  5 ++
 desci-server/src/controllers/nodes/show.ts    | 49 ++++++-------
 desci-server/src/services/nodeManager.ts      | 71 ++++++++++++++++++-
 desci-server/src/services/repoService.ts      | 19 +++--
 7 files changed, 127 insertions(+), 44 deletions(-)

diff --git a/desci-repo/src/controllers/nodes/documents.ts b/desci-repo/src/controllers/nodes/documents.ts
index dc72aeb44..89df8be4a 100644
--- a/desci-repo/src/controllers/nodes/documents.ts
+++ b/desci-repo/src/controllers/nodes/documents.ts
@@ -37,7 +37,7 @@ export const createNodeDocument = async function (req: Request, res: Response) {
 
     logger.trace({ peerId: backendRepo.networkSubsystem.peerId, uuid }, 'Document Created');
 
-    // const document = await handle.doc();
+    const document = await handle.doc();
 
     logger.trace({ handleReady: handle.isReady() }, 'Document Retrieved');
 
@@ -68,15 +68,16 @@ export const createNodeDocument = async function (req: Request, res: Response) {
 export const getLatestNodeManifest = async function (req: Request, res: Response) {
   const logger = parentLogger.child({ module: 'getLatestNodeManifest', params: req.params });
   logger.trace('getLatestNodeManifest');
+  const { uuid, documentId } = req.params;
 
+  // todo: add support for documentId params and skip querying node
   try {
-    if (!req.params.uuid) {
+    if (!uuid) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
       logger.trace('No UUID FOUND');
       return;
     }
 
-    const { uuid } = req.params;
     const node = await findNodeByUuid(ensureUuidEndsWithDot(uuid));
     logger.trace({ node }, 'Retrieve Node');
 
diff --git a/desci-repo/src/logger.ts b/desci-repo/src/logger.ts
index 2589555a6..22ede5be2 100644
--- a/desci-repo/src/logger.ts
+++ b/desci-repo/src/logger.ts
@@ -90,8 +90,16 @@ function logMethodHooks(inputArgs, method) {
 }
 
 const IS_PROD = process.env.NODE_ENV === 'production';
-
+const transport = {
+  ...(!IS_PROD && {
+    transport: {
+      targets: [devTransport, fileTransport],
+    },
+  }),
+};
+console.log('[transport]', transport);
 export const logger = pino({
+  ...transport,
   level: logLevel,
   serializers: {
     files: omitBuffer,
@@ -99,13 +107,6 @@ export const logger = pino({
   hooks: {
     logMethod: logMethodHooks,
   },
-  ...(!IS_PROD
-    ? {
-        transport: {
-          targets: [devTransport, fileTransport],
-        },
-      }
-    : {}),
   redact: {
     paths: [
       'req.headers.cookie',
diff --git a/desci-server/src/controllers/data/retrieve.ts b/desci-server/src/controllers/data/retrieve.ts
index 372157ab6..245fb6816 100644
--- a/desci-server/src/controllers/data/retrieve.ts
+++ b/desci-server/src/controllers/data/retrieve.ts
@@ -14,6 +14,7 @@ import redisClient, { getOrCache } from '../../redisClient.js';
 import { getLatestDriveTime } from '../../services/draftTrees.js';
 import { getDatasetTar } from '../../services/ipfs.js';
 import { NodeUuid, getLatestManifestFromNode } from '../../services/manifestRepo.js';
+import { showNodeDraftManifest } from '../../services/nodeManager.js';
 import { getTreeAndFill, getTreeAndFillDeprecated } from '../../utils/driveUtils.js';
 import { cleanupManifestUrl } from '../../utils/manifest.js';
 import { ensureUuidEndsWithDot } from '../../utils.js';
@@ -94,7 +95,7 @@ export const retrieveTree = async (req: Request, res: Response<RetrieveResponse
   }
 
   try {
-    const manifest = await getLatestManifestFromNode(node);
+    const manifest = await showNodeDraftManifest(node); // getLatestManifestFromNode(node);
     const filledTree = (await getTreeAndFill(manifest, uuid, ownerId)) ?? [];
     const latestDriveClock = getLatestDriveTime(node.uuid as NodeUuid);
 
diff --git a/desci-server/src/controllers/nodes/draftCreate.ts b/desci-server/src/controllers/nodes/draftCreate.ts
index 16d3585ab..4b99df8b5 100755
--- a/desci-server/src/controllers/nodes/draftCreate.ts
+++ b/desci-server/src/controllers/nodes/draftCreate.ts
@@ -12,6 +12,7 @@ import { Request, Response, NextFunction } from 'express';
 
 import { prisma } from '../../client.js';
 import { logger as parentLogger } from '../../logger.js';
+import { setToCache } from '../../redisClient.js';
 import { hasAvailableDataUsageForUpload } from '../../services/dataService.js';
 import {
   addBufferToIpfs,
@@ -143,6 +144,10 @@ export const draftCreate = async (req: Request, res: Response, next: NextFunctio
       documentId,
       document,
     });
+
+    // cache initial doc for a minute (60)
+    await setToCache(`node-draft-${node.uuid}`, { document, documentId }, 60);
+
     return;
   } catch (err) {
     logger.error({ err }, 'mint-err');
diff --git a/desci-server/src/controllers/nodes/show.ts b/desci-server/src/controllers/nodes/show.ts
index 3263ff27d..b9a7d2c05 100755
--- a/desci-server/src/controllers/nodes/show.ts
+++ b/desci-server/src/controllers/nodes/show.ts
@@ -8,8 +8,9 @@ import { prisma } from '../../client.js';
 import { PUBLIC_IPFS_PATH } from '../../config/index.js';
 import { logger as parentLogger } from '../../logger.js';
 import { RequestWithNode } from '../../middleware/authorisation.js';
-import { NodeUuid } from '../../services/manifestRepo.js';
-import repoService from '../../services/repoService.js';
+// import { NodeUuid } from '../../services/manifestRepo.js';
+import { showNodeDraftManifest } from '../../services/nodeManager.js';
+// import repoService from '../../services/repoService.js';
 import { cleanupManifestUrl } from '../../utils/manifest.js';
 import { ensureUuidEndsWithDot } from '../../utils.js';
 
@@ -83,33 +84,33 @@ export const show = async (req: RequestWithNode, res: Response, next: NextFuncti
       return;
     }
 
-    let gatewayUrl = discovery.manifestUrl;
+    // let gatewayUrl = discovery.manifestUrl;
     try {
-      gatewayUrl = cleanupManifestUrl(gatewayUrl, req.query?.g as string);
-      logger.trace({ gatewayUrl, uuid }, 'transforming manifest');
+      // gatewayUrl = cleanupManifestUrl(gatewayUrl, req.query?.g as string);
+      // logger.trace({ gatewayUrl, uuid }, 'transforming manifest');
 
-      // this can take >30s before it resolves or
-      // even fail after a much longer time there by causing the slow loading of nodes
-      // and a lot of failing `*.loggedIn` test in
-      (discovery as any).manifestData = transformManifestWithHistory(
-        (await axios.get(gatewayUrl, { timeout: 2000 })).data,
-        discovery,
-      );
-      // Add draft manifest document
-      const nodeUuid = ensureUuidEndsWithDot(uuid) as NodeUuid;
-      // for draft nodes we can do this asynchronously on the frontend
-      const manifest = await repoService.getDraftManifest(nodeUuid);
+      // // this can take >30s before it resolves or
+      // // even fail after a much longer time there by causing the slow loading of nodes
+      // // and a lot of failing `*.loggedIn` test in
+      // (discovery as any).manifestData = transformManifestWithHistory(
+      //   (await axios.get(gatewayUrl, { timeout: 2000 })).data,
+      //   discovery,
+      // );
+      // // Add draft manifest document
+      // const nodeUuid = ensureUuidEndsWithDot(uuid) as NodeUuid;
+      // // for draft nodes we can do this asynchronously on the frontend
+      // const manifest = await repoService.getDraftManifest(nodeUuid);
 
-      logger.info({ manifest: !!manifest }, '[SHOW API GET DRAFT MANIFEST]');
+      // logger.info({ manifest: !!manifest }, '[SHOW API GET DRAFT MANIFEST]');
 
-      if (manifest) (discovery as any).manifestData = transformManifestWithHistory(manifest, discovery);
-      delete (discovery as any).restBody;
-      logger.info({}, 'Retrive DraftManifest For /SHOW');
+      // if (manifest) (discovery as any).manifestData = transformManifestWithHistory(manifest, discovery);
+      // delete (discovery as any).restBody;
+      // logger.info({}, 'Retrive DraftManifest For /SHOW');
+      logger.trace('[showNodeDraftManifest]::START');
+      (discovery as any).manifestData = await showNodeDraftManifest(discovery, req.query?.g as string);
+      logger.trace('[showNodeDraftManifest]::END');
     } catch (err) {
-      logger.error(
-        { err, manifestUrl: discovery.manifestUrl, gatewayUrl },
-        'nodes/show.ts: failed to preload manifest',
-      );
+      logger.error({ err }, 'nodes/show.ts: failed to preload manifest');
     }
 
     res.send({ ...discovery });
diff --git a/desci-server/src/services/nodeManager.ts b/desci-server/src/services/nodeManager.ts
index e932fa29d..129ea3e85 100644
--- a/desci-server/src/services/nodeManager.ts
+++ b/desci-server/src/services/nodeManager.ts
@@ -1,16 +1,21 @@
+import { DocumentId } from '@automerge/automerge-repo';
 import { PdfComponent, ResearchObjectComponentType, ResearchObjectV1 } from '@desci-labs/desci-models';
-import { DataType, Prisma, PublicDataReference, User } from '@prisma/client';
+import { DataType, Node, Prisma, PublicDataReference, User } from '@prisma/client';
 import axios from 'axios';
 
 import { prisma } from '../client.js';
 import { MEDIA_SERVER_API_KEY, MEDIA_SERVER_API_URL, PUBLIC_IPFS_PATH } from '../config/index.js';
+import { ForbiddenError, NodeUuid, NotFoundError } from '../internal.js';
 import { logger as parentLogger } from '../logger.js';
+import { getFromCache } from '../redisClient.js';
 import { getIndexedResearchObjects } from '../theGraph.js';
+import { ResearchObjectDocument } from '../types/documents.js';
 import { generateDataReferences } from '../utils/dataRefTools.js';
-import { cleanupManifestUrl } from '../utils/manifest.js';
+import { cleanupManifestUrl, transformManifestWithHistory } from '../utils/manifest.js';
 import { hexToCid, randomUUID64, asyncMap, ensureUuidEndsWithDot } from '../utils.js';
 
 import { addBufferToIpfs, downloadFilesAndMakeManifest, getSizeForCid, resolveIpfsData } from './ipfs.js';
+import repoService from './repoService.js';
 
 const ESTUARY_MIRROR_ID = 1;
 
@@ -443,3 +448,65 @@ export const cacheNodeMetadata = async (uuid: string, manifestCid: string, versi
     return false;
   }
 };
+
+export const showNodeDraftManifest = async (node: Node, ipfsFallbackUrl?: string) => {
+  logger.trace('[getNodeManifest] ==> start');
+  const timeDifferenceInSeconds = getTimeDiffInSec(node.createdAt.toString());
+  logger.trace(
+    { timeDifferenceInSeconds, uuid: node.uuid, now: Date.now(), created: node.createdAt },
+    '[getNodeManifest] ==> timeDifferenceInSeconds',
+  );
+
+  const cachedDraftMetadata = (await getFromCache(`node-draft-${node.uuid}`)) as {
+    documentId: DocumentId;
+    document: ResearchObjectDocument;
+  };
+
+  logger.trace(
+    { timeDifferenceInSeconds, uuid: node.uuid, cachedDraftMetadata: !!cachedDraftMetadata },
+    '[getNodeManifest] ==> cachedDraftMetadata',
+  );
+
+  if (timeDifferenceInSeconds <= 30 && cachedDraftMetadata) {
+    logger.trace(
+      { timeDifferenceInSeconds, uuid: node.uuid, driveClock: cachedDraftMetadata.document.driveClock },
+      '[getNodeManifest] ==> Found cachedDraftetadata',
+    );
+    return cachedDraftMetadata.document.manifest;
+  }
+
+  logger.trace(
+    { timeDifferenceInSeconds, uuid: node.uuid, cachedDraftMetadata: !!cachedDraftMetadata },
+    '[getNodeManifest] ==> Fallback to repoService.getDraftManifest',
+  );
+  // Add draft manifest document
+  const nodeUuid = ensureUuidEndsWithDot(node.uuid) as NodeUuid;
+  // for draft nodes we can do this asynchronously on the frontend
+  const manifest = await repoService.getDraftManifest(nodeUuid);
+
+  logger.trace({ nodeUuid, manifestFound: !!manifest }, '[getNodeManifest] ==> repoService.getDraftManifest');
+
+  if (manifest) return manifest;
+
+  logger.trace(
+    { uuid: node.uuid, cid: node.manifestUrl, ipfsFallbackUrl, timeout: 5000 },
+    '[getNodeManifest] ==> Fallback to IPFS Call',
+  );
+  const gatewayUrl = cleanupManifestUrl(node.manifestUrl, ipfsFallbackUrl);
+  const data = transformManifestWithHistory((await axios.get(gatewayUrl, { timeout: 5000 })).data, node);
+
+  logger.trace(
+    { uuid: node.uuid, cid: node.manifestUrl, ipfsFallbackUrl, manifest: !!data },
+    '[getNodeManifest] ==> Found manifest on IPFS',
+  );
+
+  logger.trace('[getNodeManifest] ==> end');
+  return data;
+};
+
+const getTimeDiffInSec = (date: string) => {
+  const now = Date.now();
+  const start = new Date(date).getTime();
+
+  return (now - start) / 1000;
+};
diff --git a/desci-server/src/services/repoService.ts b/desci-server/src/services/repoService.ts
index ea29138ca..0bce51e55 100644
--- a/desci-server/src/services/repoService.ts
+++ b/desci-server/src/services/repoService.ts
@@ -1,6 +1,6 @@
 import { DocumentId } from '@automerge/automerge-repo';
 import { ResearchObjectV1, ManifestActions } from '@desci-labs/desci-models';
-import axios, { AxiosInstance } from 'axios';
+import axios, { AxiosError, AxiosInstance } from 'axios';
 
 import { als, logger as parentLogger } from '../logger.js';
 import { ResearchObjectDocument } from '../types/documents.js';
@@ -17,6 +17,9 @@ class RepoService {
 
   baseUrl: string;
 
+  defaultTimeoutInMilliseconds: 5000;
+  timeoutErrorMessage = 'Timeout: Call to Repo service timed out';
+
   constructor() {
     if (!process.env.REPO_SERVICE_SECRET_KEY || !process.env.REPO_SERVER_URL)
       throw new Error('[REPO SERVICE]: env.REPO_SERVER_URL or env.REPO_SERVICE_SECRET_KEY missing');
@@ -97,7 +100,7 @@ class RepoService {
     }
   }
 
-  async getDraftDocument(arg: { uuid: NodeUuid }) {
+  async getDraftDocument(arg: { uuid: NodeUuid; timeout?: number }) {
     if (!arg.uuid) {
       logger.warn({ arg }, 'Attempt to retrieve draft manifest for empty UUID');
       return null;
@@ -110,6 +113,8 @@ class RepoService {
           headers: {
             'x-api-remote-traceid': (als.getStore() as any)?.traceId,
           },
+          timeout: arg.timeout ?? this.defaultTimeoutInMilliseconds,
+          timeoutErrorMessage: this.timeoutErrorMessage,
         },
       );
       if (response.status === 200 && response.data.ok) {
@@ -118,17 +123,19 @@ class RepoService {
         return null;
       }
     } catch (err) {
+      const error = err as AxiosError;
+      if (error?.code === 'ECONNABORTED' || error?.message?.toLowerCase().includes('timeout')) {
+        logger.error({ error }, 'REPO_SERVICE_CALL_TIMEOUT');
+      }
       logger.error({ err }, 'GET Draft Document Error');
       return null;
     }
   }
 
-  async getDraftManifest(uuid: NodeUuid) {
+  async getDraftManifest(uuid: NodeUuid, timeout?: number) {
     logger.info({ uuid }, 'Retrieve Draft Document');
-    // try {} catch (err) {}
-    // uuid = ensureUuidEndsWithDot(uuid) as NodeUuid;
     try {
-      const response = await this.getDraftDocument({ uuid });
+      const response = await this.getDraftDocument({ uuid, timeout });
       return response ? response.manifest : null;
     } catch (err) {
       logger.error({ err }, 'GET Draft manifest Error');

From 60739180a2581038fc2fba6ea696c5028f4891f7 Mon Sep 17 00:00:00 2001
From: shadrach <shadrachtemitayo@gmail.com>
Date: Wed, 9 Oct 2024 07:28:06 -0500
Subject: [PATCH 79/81] optimize all calls and apis to getDraftManifest, fast
 track repo latest node manifest api using documentId query param

---
 desci-repo/src/controllers/nodes/documents.ts | 50 +++++++++++++++----
 .../src/controllers/communities/util.ts       |  5 +-
 desci-server/src/controllers/data/rename.ts   | 10 +++-
 .../src/controllers/nodes/bookmarks/index.ts  | 14 ++----
 .../src/controllers/nodes/draftUpdate.ts      |  5 +-
 .../src/controllers/nodes/prepublish.ts       |  5 +-
 .../src/controllers/nodes/sharedNodes.ts      | 39 +++++++--------
 .../services/data/externalUrlProcessing.ts    |  4 +-
 desci-server/src/services/data/processing.ts  |  5 +-
 desci-server/src/services/manifestRepo.ts     | 13 +++--
 desci-server/src/services/nodeManager.ts      |  5 +-
 desci-server/src/services/repoService.ts      | 18 +++++--
 .../test/integration/Attestation.test.ts      |  2 +-
 13 files changed, 117 insertions(+), 58 deletions(-)

diff --git a/desci-repo/src/controllers/nodes/documents.ts b/desci-repo/src/controllers/nodes/documents.ts
index 89df8be4a..3188a8cce 100644
--- a/desci-repo/src/controllers/nodes/documents.ts
+++ b/desci-repo/src/controllers/nodes/documents.ts
@@ -68,10 +68,33 @@ export const createNodeDocument = async function (req: Request, res: Response) {
 export const getLatestNodeManifest = async function (req: Request, res: Response) {
   const logger = parentLogger.child({ module: 'getLatestNodeManifest', params: req.params });
   logger.trace('getLatestNodeManifest');
-  const { uuid, documentId } = req.params;
+  const { uuid } = req.params;
+  const { documentId } = req.query;
+
+  const getDocument = async (documentId: DocumentId) => {
+    const automergeUrl = getAutomergeUrl(documentId);
+    const handle = backendRepo.find<ResearchObjectDocument>(automergeUrl as AutomergeUrl);
+    logger.trace({ uuid, automergeUrl }, 'Document Handle retrieved');
+
+    logger.trace({ uuid, automergeUrl }, 'Get DOCUMENT');
+    const document = await handle.doc();
+    logger.trace({ uuid, automergeUrl }, 'DOCUMENT Retrieved');
+    return document;
+  };
 
-  // todo: add support for documentId params and skip querying node
   try {
+    // todo: add support for documentId params and skip querying node
+    // fast track call if documentId is available
+    if (documentId) {
+      logger.trace({ documentId }, 'Fast track using documentId');
+      const document = await getDocument(documentId as DocumentId);
+      if (document) res.status(200).send({ ok: true, document });
+      logger.trace({ document: !!document }, 'Fast tracked call using documentId');
+      return;
+    }
+
+    // calls might never reach this place again now that documentId is
+    // used to fast track calls and skip database calls
     if (!uuid) {
       res.status(400).send({ ok: false, message: 'Invalid data' });
       logger.trace('No UUID FOUND');
@@ -83,7 +106,7 @@ export const getLatestNodeManifest = async function (req: Request, res: Response
 
     if (!node) {
       logger.warn({ uuid }, `Node with uuid ${uuid} not found!`);
-      res.status(400).send({ ok: false, message: `Node with uuid ${uuid} not found!` });
+      res.status(404).send({ ok: false, message: `Node with uuid ${uuid} not found!` });
       return;
     }
 
@@ -92,15 +115,22 @@ export const getLatestNodeManifest = async function (req: Request, res: Response
       'Node manifestDocumentId',
     );
 
-    const automergeUrl = getAutomergeUrl(node.manifestDocumentId as DocumentId);
-    const handle = backendRepo.find<ResearchObjectDocument>(automergeUrl as AutomergeUrl);
-    logger.trace({ uuid, automergeUrl }, 'Document Handle retrieved');
+    // const automergeUrl = getAutomergeUrl(node.manifestDocumentId as DocumentId);
+    // const handle = backendRepo.find<ResearchObjectDocument>(automergeUrl as AutomergeUrl);
+    // logger.trace({ uuid, automergeUrl }, 'Document Handle retrieved');
 
-    logger.trace({ uuid, automergeUrl }, 'Get DOCUMENT');
-    const document = await handle.doc();
-    logger.trace({ uuid, automergeUrl }, 'DOCUMENT Retrieved');
+    // logger.trace({ uuid, automergeUrl }, 'Get DOCUMENT');
+    // const document = await handle.doc();
+    // logger.trace({ uuid, automergeUrl }, 'DOCUMENT Retrieved');
+
+    if (!node.manifestDocumentId) {
+      res.status(404).send({ ok: false, message: `node: ${uuid} has no documentId: ${node.manifestDocumentId}` });
+      return;
+    }
+
+    const document = await getDocument(node.manifestDocumentId as DocumentId);
 
-    logger.info({ manifest: document?.manifest, automergeUrl }, '[getLatestNodeManifest::END]');
+    logger.info({ manifest: document?.manifest }, '[getLatestNodeManifest::END]');
     res.status(200).send({ ok: true, document });
   } catch (err) {
     logger.error({ err }, 'Error');
diff --git a/desci-server/src/controllers/communities/util.ts b/desci-server/src/controllers/communities/util.ts
index e57bef7bb..469be6ba7 100644
--- a/desci-server/src/controllers/communities/util.ts
+++ b/desci-server/src/controllers/communities/util.ts
@@ -51,7 +51,10 @@ export const resolveLatestNode = async (radar: Partial<NodeRadar>) => {
 
     logger.info({ manifest }, '[SHOW API GET LAST PUBLISHED MANIFEST]');
   } catch (err) {
-    const manifest = await repoService.getDraftManifest(uuid as NodeUuid);
+    const manifest = await repoService.getDraftManifest({
+      uuid: node.uuid as NodeUuid,
+      documentId: node.manifestDocumentId,
+    });
     radar.manifest = manifest;
     logger.error({ err, manifestUrl: discovery.manifestUrl, gatewayUrl }, 'nodes/show.ts: failed to preload manifest');
   }
diff --git a/desci-server/src/controllers/data/rename.ts b/desci-server/src/controllers/data/rename.ts
index 1737a1774..86543edb7 100644
--- a/desci-server/src/controllers/data/rename.ts
+++ b/desci-server/src/controllers/data/rename.ts
@@ -78,7 +78,10 @@ export const renameData = async (req: Request, res: Response<RenameResponse | Er
       updatedManifest = response.manifest;
     } catch (err) {
       logger.error({ err }, 'Source: Rename Component Path');
-      updatedManifest = await repoService.getDraftManifest(node.uuid as NodeUuid);
+      updatedManifest = await repoService.getDraftManifest({
+        uuid: node.uuid as NodeUuid,
+        documentId: node.manifestDocumentId,
+      });
       // return res.status(400).json({ error: 'failed' });
     }
 
@@ -119,7 +122,10 @@ export const renameData = async (req: Request, res: Response<RenameResponse | Er
         updatedManifest = response?.manifest;
       } catch (err) {
         logger.error({ err }, 'Source: Rename Component');
-        updatedManifest = await repoService.getDraftManifest(node.uuid as NodeUuid);
+        updatedManifest = await repoService.getDraftManifest({
+          uuid: node.uuid as NodeUuid,
+          documentId: node.manifestDocumentId,
+        });
       }
     }
 
diff --git a/desci-server/src/controllers/nodes/bookmarks/index.ts b/desci-server/src/controllers/nodes/bookmarks/index.ts
index fd89732af..5eab47349 100644
--- a/desci-server/src/controllers/nodes/bookmarks/index.ts
+++ b/desci-server/src/controllers/nodes/bookmarks/index.ts
@@ -52,13 +52,11 @@ export const listBookmarkedNodes = async (
             uuid: true,
             dpidAlias: true,
             manifestUrl: true,
+            manifestDocumentId: true,
             // Get published versions, if any
             versions: {
               where: {
-                OR: [
-                  { transactionId: { not: null }},
-                  { commitId: { not: null }},
-                ],
+                OR: [{ transactionId: { not: null } }, { commitId: { not: null } }],
               },
             },
           },
@@ -70,14 +68,12 @@ export const listBookmarkedNodes = async (
 
     if (bookmarkedNodes?.length === 0) {
       return res.status(200).json({ ok: true, bookmarkedNodes: [] });
-    };
+    }
 
     const filledBookmarkedNodes = await Promise.all(
-      bookmarkedNodes.map(async ({ shareId, node}) => {
+      bookmarkedNodes.map(async ({ shareId, node }) => {
         const latestManifest = await getLatestManifestFromNode(node);
-        const manifestDpid = latestManifest.dpid
-          ? parseInt(latestManifest.dpid.id)
-          : undefined;
+        const manifestDpid = latestManifest.dpid ? parseInt(latestManifest.dpid.id) : undefined;
         const published = node.versions.length > 0;
 
         return {
diff --git a/desci-server/src/controllers/nodes/draftUpdate.ts b/desci-server/src/controllers/nodes/draftUpdate.ts
index 859e8bda9..723c8b70f 100644
--- a/desci-server/src/controllers/nodes/draftUpdate.ts
+++ b/desci-server/src/controllers/nodes/draftUpdate.ts
@@ -52,7 +52,10 @@ export const draftUpdate = async (req: Request, res: Response, next: NextFunctio
     let manifestParsed: ResearchObjectV1;
 
     try {
-      manifestParsed = await repoService.getDraftManifest(node.uuid as NodeUuid); //await getDraftManifestFromUuid(node.uuid as NodeUuid);
+      manifestParsed = await repoService.getDraftManifest({
+        uuid: node.uuid as NodeUuid,
+        documentId: node.manifestDocumentId,
+      }); //await getDraftManifestFromUuid(node.uuid as NodeUuid);
     } catch (e) {
       manifestParsed = req.body.manifest as ResearchObjectV1;
     }
diff --git a/desci-server/src/controllers/nodes/prepublish.ts b/desci-server/src/controllers/nodes/prepublish.ts
index 85222474f..f1ebeb78e 100644
--- a/desci-server/src/controllers/nodes/prepublish.ts
+++ b/desci-server/src/controllers/nodes/prepublish.ts
@@ -57,7 +57,10 @@ export const prepublish = async (req: RequestWithNode, res: Response<PrepublishR
       return res.status(403).json({ ok: false, error: 'Failed' });
     }
 
-    const manifest = await repoService.getDraftManifest(node.uuid as NodeUuid);
+    const manifest = await repoService.getDraftManifest({
+      uuid: node.uuid as NodeUuid,
+      documentId: node.manifestDocumentId,
+    });
 
     /**
      * Dagify and add DAGs to IPFS (No Files Pinned yet, just the folder structure added to IPFS (NOT PINNED!))
diff --git a/desci-server/src/controllers/nodes/sharedNodes.ts b/desci-server/src/controllers/nodes/sharedNodes.ts
index 768c20c30..9818ba033 100644
--- a/desci-server/src/controllers/nodes/sharedNodes.ts
+++ b/desci-server/src/controllers/nodes/sharedNodes.ts
@@ -7,13 +7,13 @@ import { logger as parentLogger } from '../../logger.js';
 import { PRIV_SHARE_CONTRIBUTION_PREFIX } from '../../services/Contributors.js';
 
 export type SharedNode = {
-    uuid: string;
-    title: string;
-    published: boolean;
-    dpid?: number;
-    shareKey: string;
-    pendingVerification: boolean;
-    pendingContributionId?: string;
+  uuid: string;
+  title: string;
+  published: boolean;
+  dpid?: number;
+  shareKey: string;
+  pendingVerification: boolean;
+  pendingContributionId?: string;
 };
 
 export type ListSharedNodesRequest = Request<never, never> & {
@@ -58,13 +58,11 @@ export const listSharedNodes = async (req: ListSharedNodesRequest, res: Response
             uuid: true,
             manifestUrl: true,
             dpidAlias: true,
+            manifestDocumentId: true,
             // Get published versions, if any
             versions: {
               where: {
-                OR: [
-                  { transactionId: { not: null }},
-                  { commitId: { not: null }},
-                ],
+                OR: [{ transactionId: { not: null } }, { commitId: { not: null } }],
               },
             },
           },
@@ -76,7 +74,7 @@ export const listSharedNodes = async (req: ListSharedNodesRequest, res: Response
 
     if (privSharedNodes?.length === 0) {
       return res.status(200).json({ ok: true, sharedNodes: [] });
-    };
+    }
 
     const nodeUuids = privSharedNodes.map((priv) => priv.node.uuid);
 
@@ -96,21 +94,22 @@ export const listSharedNodes = async (req: ListSharedNodesRequest, res: Response
         verified: true,
         denied: true,
         contributorId: true,
-        node: { select: { uuid: true }}
+        node: { select: { uuid: true } },
       },
     });
 
-    const contributionEntryMap = contributionEntries.reduce((acc, entry) => {
-      acc[entry.node.uuid] = entry;
-      return acc;
-    }, {} as Record<string, typeof contributionEntries[number]>);
+    const contributionEntryMap = contributionEntries.reduce(
+      (acc, entry) => {
+        acc[entry.node.uuid] = entry;
+        return acc;
+      },
+      {} as Record<string, (typeof contributionEntries)[number]>,
+    );
 
     const filledSharedNodes = await Promise.all(
       privSharedNodes.map(async ({ shareId, node }) => {
         const latestManifest = await getLatestManifestFromNode(node);
-        const manifestDpid = latestManifest.dpid
-          ? parseInt(latestManifest.dpid.id)
-          : undefined;
+        const manifestDpid = latestManifest.dpid ? parseInt(latestManifest.dpid.id) : undefined;
         const published = node.versions.length > 0;
 
         const contributionEntry = contributionEntryMap[node.uuid];
diff --git a/desci-server/src/services/data/externalUrlProcessing.ts b/desci-server/src/services/data/externalUrlProcessing.ts
index a02b4c09f..fcc5008cd 100644
--- a/desci-server/src/services/data/externalUrlProcessing.ts
+++ b/desci-server/src/services/data/externalUrlProcessing.ts
@@ -274,7 +274,9 @@ export async function processExternalUrlDataToIpfs({
       }
     }
 
-    updatedManifest = updatedManifest ?? (await repoService.getDraftManifest(ltsNode.uuid as NodeUuid));
+    updatedManifest =
+      updatedManifest ??
+      (await repoService.getDraftManifest({ uuid: ltsNode.uuid as NodeUuid, documentId: ltsNode.manifestDocumentId }));
 
     // Update existing data references, add new data references.
     const upserts = await updateDataReferences({ node, user, updatedManifest });
diff --git a/desci-server/src/services/data/processing.ts b/desci-server/src/services/data/processing.ts
index b17c5f9bb..868b69e19 100644
--- a/desci-server/src/services/data/processing.ts
+++ b/desci-server/src/services/data/processing.ts
@@ -137,7 +137,10 @@ export async function processS3DataToIpfs({
     });
 
     // const ltsManifest = await getLatestManifestFromNode(ltsNode);
-    let updatedManifest = await repoService.getDraftManifest(ltsNode.uuid as NodeUuid);
+    let updatedManifest = await repoService.getDraftManifest({
+      uuid: ltsNode.uuid as NodeUuid,
+      documentId: ltsNode.manifestDocumentId,
+    });
 
     const { filteredFiles } = filterFirstNestings(pinResult.slice(0, -1));
 
diff --git a/desci-server/src/services/manifestRepo.ts b/desci-server/src/services/manifestRepo.ts
index 1386fe8b4..31b7f368e 100644
--- a/desci-server/src/services/manifestRepo.ts
+++ b/desci-server/src/services/manifestRepo.ts
@@ -1,6 +1,8 @@
 import { AutomergeUrl, DocumentId } from '@automerge/automerge-repo';
 import { Node } from '@prisma/client';
+
 import { logger } from '../logger.js';
+
 import { getManifestFromNode } from './data/processing.js';
 import repoService from './repoService.js';
 
@@ -10,11 +12,12 @@ export const getAutomergeUrl = (documentId: DocumentId): AutomergeUrl => {
   return `automerge:${documentId}` as AutomergeUrl;
 };
 
-export const getLatestManifestFromNode = async (
-  node: Pick<Node, "manifestUrl" | "uuid">
-) => {
+export const getLatestManifestFromNode = async (node: Pick<Node, 'manifestUrl' | 'uuid' | 'manifestDocumentId'>) => {
   logger.info({ uuid: node.uuid }, 'START [getLatestManifestFromNode]');
-  let manifest = await repoService.getDraftManifest(node.uuid as NodeUuid);
+  let manifest = await repoService.getDraftManifest({
+    uuid: node.uuid as NodeUuid,
+    documentId: node.manifestDocumentId,
+  });
   if (!manifest) {
     const publishedManifest = await getManifestFromNode(node);
     manifest = publishedManifest.manifest;
@@ -25,4 +28,4 @@ export const getLatestManifestFromNode = async (
 export function assertNever(value: never) {
   console.error('Unknown value', value);
   throw Error('Not Possible');
-};
+}
diff --git a/desci-server/src/services/nodeManager.ts b/desci-server/src/services/nodeManager.ts
index 129ea3e85..1436da574 100644
--- a/desci-server/src/services/nodeManager.ts
+++ b/desci-server/src/services/nodeManager.ts
@@ -482,7 +482,10 @@ export const showNodeDraftManifest = async (node: Node, ipfsFallbackUrl?: string
   // Add draft manifest document
   const nodeUuid = ensureUuidEndsWithDot(node.uuid) as NodeUuid;
   // for draft nodes we can do this asynchronously on the frontend
-  const manifest = await repoService.getDraftManifest(nodeUuid);
+  const manifest = await repoService.getDraftManifest({
+    uuid: nodeUuid,
+    documentId: node.manifestDocumentId as DocumentId,
+  });
 
   logger.trace({ nodeUuid, manifestFound: !!manifest }, '[getNodeManifest] ==> repoService.getDraftManifest');
 
diff --git a/desci-server/src/services/repoService.ts b/desci-server/src/services/repoService.ts
index 0bce51e55..35b9bf030 100644
--- a/desci-server/src/services/repoService.ts
+++ b/desci-server/src/services/repoService.ts
@@ -100,15 +100,15 @@ class RepoService {
     }
   }
 
-  async getDraftDocument(arg: { uuid: NodeUuid; timeout?: number }) {
-    if (!arg.uuid) {
+  async getDraftDocument(arg: { uuid: NodeUuid; documentId?: string | DocumentId; timeout?: number }) {
+    if (!arg.uuid && !arg.documentId) {
       logger.warn({ arg }, 'Attempt to retrieve draft manifest for empty UUID');
       return null;
     }
     logger.info({ arg }, 'Retrieve Draft Document');
     try {
       const response = await this.#client.get<ApiResponse<{ document: ResearchObjectDocument }>>(
-        `${this.baseUrl}/v1/nodes/documents/draft/${arg.uuid}`,
+        `${this.baseUrl}/v1/nodes/documents/draft/${arg.uuid}?documentId=${arg.documentId}`,
         {
           headers: {
             'x-api-remote-traceid': (als.getStore() as any)?.traceId,
@@ -132,10 +132,18 @@ class RepoService {
     }
   }
 
-  async getDraftManifest(uuid: NodeUuid, timeout?: number) {
+  async getDraftManifest({
+    uuid,
+    timeout,
+    documentId,
+  }: {
+    uuid: NodeUuid;
+    documentId?: string | DocumentId;
+    timeout?: number;
+  }) {
     logger.info({ uuid }, 'Retrieve Draft Document');
     try {
-      const response = await this.getDraftDocument({ uuid, timeout });
+      const response = await this.getDraftDocument({ uuid, timeout, documentId });
       return response ? response.manifest : null;
     } catch (err) {
       logger.error({ err }, 'GET Draft manifest Error');
diff --git a/desci-server/test/integration/Attestation.test.ts b/desci-server/test/integration/Attestation.test.ts
index a6a111899..1d7bd25e0 100644
--- a/desci-server/test/integration/Attestation.test.ts
+++ b/desci-server/test/integration/Attestation.test.ts
@@ -133,7 +133,7 @@ const clearDatabase = async () => {
   await prisma.$queryRaw`TRUNCATE TABLE "Node" CASCADE;`;
 };
 
-describe.only('Attestations Service', async () => {
+describe('Attestations Service', async () => {
   let baseManifest: ResearchObjectV1;
   let baseManifestCid: string;
   let users: User[];

From 51e78caa5e0c135d5b213929fe8d8445c7fa63f4 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Thu, 10 Oct 2024 08:49:43 -0500
Subject: [PATCH 80/81] deprecate old publish flow

---
 desci-server/src/controllers/nodes/publish.ts | 41 +++++++++----------
 desci-server/src/server.ts                    |  4 +-
 2 files changed, 21 insertions(+), 24 deletions(-)

diff --git a/desci-server/src/controllers/nodes/publish.ts b/desci-server/src/controllers/nodes/publish.ts
index 382d38c92..b39326144 100644
--- a/desci-server/src/controllers/nodes/publish.ts
+++ b/desci-server/src/controllers/nodes/publish.ts
@@ -123,25 +123,24 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
 
     if (task) return res.status(400).json({ error: 'Node publishing in progress' });
 
-    let publishTask: PublishTaskQueue | undefined;
-    let dpidAlias: number;
-    if (useNewPublish) {
-      logger.info({ ceramicStream, commitId, uuid, owner: owner.id }, 'Triggering new publish flow');
-      dpidAlias = await syncPublish(ceramicStream, commitId, node, owner, cid, uuid, manifest);
-    } else {
-      publishTask = await prisma.publishTaskQueue.create({
-        data: {
-          cid,
-          dpid: manifest.dpid?.id,
-          userId: owner.id,
-          transactionId,
-          ceramicStream,
-          commitId,
-          uuid: ensureUuidEndsWithDot(uuid),
-          status: PublishTaskQueueStatus.WAITING,
-        },
-      });
-    }
+    // let publishTask: PublishTaskQueue | undefined;
+    logger.info({ ceramicStream, commitId, uuid, owner: owner.id }, 'Triggering new publish flow');
+    const dpidAlias = await syncPublish(ceramicStream, commitId, node, owner, cid, uuid, manifest);
+    // if (useNewPublish) {
+    // } else {
+    // publishTask = await prisma.publishTaskQueue.create({
+    //   data: {
+    //     cid,
+    //     dpid: manifest.dpid?.id,
+    //     userId: owner.id,
+    //     transactionId,
+    //     ceramicStream,
+    //     commitId,
+    //     uuid: ensureUuidEndsWithDot(uuid),
+    //     status: PublishTaskQueueStatus.WAITING,
+    //   },
+    // });
+    // }
 
     saveInteraction(
       req,
@@ -154,7 +153,7 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
         ceramicStream,
         commitId,
         uuid: ensureUuidEndsWithDot(uuid),
-        status: PublishTaskQueueStatus.WAITING,
+        // status: PublishTaskQueueStatus.WAITING,
       },
       owner.id,
     );
@@ -182,7 +181,7 @@ export const publish = async (req: PublishRequest, res: Response<PublishResBody>
     return res.send({
       ok: true,
       dpid: dpidAlias ?? parseInt(manifest.dpid?.id),
-      taskId: publishTask?.id,
+      // taskId: publishTask?.id,
     });
   } catch (err) {
     logger.error({ err }, '[publish::publish] node-publish-err');
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 5a4569ac3..03606067d 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -147,7 +147,7 @@ class AppServer {
     });
 
     // init publish worker
-    this.#initWorker();
+    // this.#initWorker();
   }
 
   get httpServer() {
@@ -249,8 +249,6 @@ class AppServer {
   }
 
   async #initWorker() {
-    // TODO: remove after testing
-    // await Promise.all([runWorkerUntilStopped(), runWorkerUntilStopped()]);
     await runWorkerUntilStopped();
   }
 }

From aed8e26eff222e8b9f661a3d1914df8a8f86a889 Mon Sep 17 00:00:00 2001
From: shadrach-tayo <shadrachtemitayo@gmail.com>
Date: Thu, 10 Oct 2024 13:55:29 -0500
Subject: [PATCH 81/81] feat: Doi submission queue cron job

---
 desci-server/.gitignore                       |  2 +
 desci-server/package.json                     |  1 +
 desci-server/src/controllers/doi/mint.ts      | 15 +-----
 desci-server/src/redisClient.ts               |  2 +
 desci-server/src/server.ts                    | 12 ++---
 desci-server/src/services/Doi.ts              | 26 +++++++++-
 desci-server/src/services/crossRef/client.ts  |  5 --
 .../src/workers/doiSubmissionQueue.ts         | 50 +++++++++++++++++++
 desci-server/yarn.lock                        | 46 +++++++----------
 9 files changed, 103 insertions(+), 56 deletions(-)
 create mode 100644 desci-server/src/workers/doiSubmissionQueue.ts

diff --git a/desci-server/.gitignore b/desci-server/.gitignore
index 358616150..36e98c535 100755
--- a/desci-server/.gitignore
+++ b/desci-server/.gitignore
@@ -19,3 +19,5 @@ queries.sql
 
 # Sentry Config File
 .sentryclirc
+
+seed-doi-queue.ts
\ No newline at end of file
diff --git a/desci-server/package.json b/desci-server/package.json
index ec8c73380..f2a664a6a 100755
--- a/desci-server/package.json
+++ b/desci-server/package.json
@@ -85,6 +85,7 @@
     "body-parser": "^1.20.2",
     "concurrently": "^8.2.0",
     "cookie-parser": "^1.4.5",
+    "cron": "^3.1.7",
     "crypto": "^1.0.1",
     "ethers": "^5.6.9",
     "express": "^4.17.1",
diff --git a/desci-server/src/controllers/doi/mint.ts b/desci-server/src/controllers/doi/mint.ts
index 879b849ef..1072035f9 100644
--- a/desci-server/src/controllers/doi/mint.ts
+++ b/desci-server/src/controllers/doi/mint.ts
@@ -88,20 +88,7 @@ export const handleCrossrefNotificationCallback = async (
     if (response.success) {
       logger.info({ response, submission }, 'CREATE DOI ');
 
-      const doiRecord = await prisma.doiRecord.create({
-        data: {
-          uuid: submission.uuid,
-          dpid: submission.dpid,
-          doi: submission.uniqueDoi,
-        },
-      });
-      await doiService.updateSubmission(
-        { id: submission.id },
-        {
-          status: DoiStatus.SUCCESS,
-          doiRecordId: doiRecord.id,
-        },
-      );
+      await doiService.onRegistrationSuccessful(submission);
 
       // send discord notification
       discordNotify({
diff --git a/desci-server/src/redisClient.ts b/desci-server/src/redisClient.ts
index 856bd1cda..0852cd0b9 100644
--- a/desci-server/src/redisClient.ts
+++ b/desci-server/src/redisClient.ts
@@ -3,6 +3,7 @@ import os from 'os';
 import { createClient } from 'redis';
 
 import { logger as parentLogger } from './logger.js';
+import { SubmissionQueueJob } from './workers/doiSubmissionQueue.js';
 
 const hostname = os.hostname();
 const logger = parentLogger.child({
@@ -151,6 +152,7 @@ process.on('exit', () => {
   logger.info('Process caught exit');
   lockService.freeLocks();
   redisClient.quit();
+  SubmissionQueueJob.stop();
 });
 
 // catches ctrl+c event
diff --git a/desci-server/src/server.ts b/desci-server/src/server.ts
index 5a4569ac3..5b16b2d6e 100644
--- a/desci-server/src/server.ts
+++ b/desci-server/src/server.ts
@@ -28,6 +28,7 @@ import { NotFoundError, RequestWithUser, extractAuthToken, extractUserFromToken
 import { als, logger } from './logger.js';
 import { ensureUserIfPresent } from './middleware/ensureUserIfPresent.js';
 import { errorHandler } from './middleware/errorHandler.js';
+import { SubmissionQueueJob } from './workers/doiSubmissionQueue.js';
 import { runWorkerUntilStopped } from './workers/publish.js';
 
 // const __dirname = path.dirname(__filename);
@@ -146,8 +147,8 @@ class AppServer {
       console.log(`Server running on port ${this.port}`);
     });
 
-    // init publish worker
-    this.#initWorker();
+    // start jobs
+    this.startJobs();
   }
 
   get httpServer() {
@@ -248,10 +249,9 @@ class AppServer {
     }
   }
 
-  async #initWorker() {
-    // TODO: remove after testing
-    // await Promise.all([runWorkerUntilStopped(), runWorkerUntilStopped()]);
-    await runWorkerUntilStopped();
+  async startJobs() {
+    // start doi submission cron job
+    SubmissionQueueJob.start();
   }
 }
 function getRemoteAddress(req) {
diff --git a/desci-server/src/services/Doi.ts b/desci-server/src/services/Doi.ts
index c160c06fd..cf4994d51 100644
--- a/desci-server/src/services/Doi.ts
+++ b/desci-server/src/services/Doi.ts
@@ -1,5 +1,5 @@
 import { PdfComponent, ResearchObjectComponentType, ResearchObjectV1 } from '@desci-labs/desci-models';
-import { DoiStatus, Prisma, PrismaClient } from '@prisma/client';
+import { DoiStatus, DoiSubmissionQueue, Prisma, PrismaClient } from '@prisma/client';
 import { v4 } from 'uuid';
 
 import {
@@ -164,7 +164,6 @@ export class DoiService {
 
     // only create doi if submission status is success
     const submission = await crossRefClient.addSubmissiontoQueue({
-      // doi: doiRecord.id,
       dpid,
       uuid: ensureUuidEndsWithDot(uuid),
       uniqueDoi: doi,
@@ -208,10 +207,33 @@ export class DoiService {
     });
   }
 
+  async getPendingSubmissions() {
+    return await this.dbClient.doiSubmissionQueue.findMany({
+      where: { status: DoiStatus.PENDING },
+    });
+  }
+
   async updateSubmission(
     filter: Prisma.DoiSubmissionQueueWhereInput,
     data: Prisma.DoiSubmissionQueueUncheckedUpdateManyInput,
   ) {
     return await this.dbClient.doiSubmissionQueue.updateMany({ where: filter, data });
   }
+
+  async onRegistrationSuccessful(submission: DoiSubmissionQueue) {
+    const doiRecord = await this.dbClient.doiRecord.create({
+      data: {
+        uuid: submission.uuid,
+        dpid: submission.dpid,
+        doi: submission.uniqueDoi,
+      },
+    });
+    await this.updateSubmission(
+      { id: submission.id },
+      {
+        status: DoiStatus.SUCCESS,
+        doiRecordId: doiRecord.id,
+      },
+    );
+  }
 }
diff --git a/desci-server/src/services/crossRef/client.ts b/desci-server/src/services/crossRef/client.ts
index 9829a5dd8..4c2a78d87 100644
--- a/desci-server/src/services/crossRef/client.ts
+++ b/desci-server/src/services/crossRef/client.ts
@@ -174,11 +174,6 @@ class CrossRefClient {
     }
   }
 
-  // check if there's a pending submission for a dpid
-  async getPendingSubmission(dpid: string) {
-    // todo: retrieve doi whose submission log is pending
-  }
-
   async registerDoi(query: {
     manifest: ResearchObjectV1;
     doi: string;
diff --git a/desci-server/src/workers/doiSubmissionQueue.ts b/desci-server/src/workers/doiSubmissionQueue.ts
new file mode 100644
index 000000000..dbbd8ba25
--- /dev/null
+++ b/desci-server/src/workers/doiSubmissionQueue.ts
@@ -0,0 +1,50 @@
+import { CronJob } from 'cron';
+
+import { asyncMap, doiService, logger as parentLogger } from '../internal.js';
+import { DiscordChannel, discordNotify, DiscordNotifyType } from '../utils/discordUtils.js';
+
+const logger = parentLogger.child({ module: 'DoiSubmissionJob' });
+
+const pingDoi = async (doi: string) => {
+  const response = await fetch(`https://doi.org/${doi}`, { method: 'HEAD' });
+  logger.trace({ ping: response.ok, doi, headers: response.headers }, 'PING DOI');
+  if (response.ok) return true;
+  return false;
+};
+
+/**
+ * Submission queue cron callback
+ * Concurrently process submission queue by pinging their respective
+ * DOIs, if they resolve mark doi registration as successful and send a discord notification
+ * to this effect
+ * @returns void
+ */
+export const onTick = async () => {
+  const pendingSubmissions = await doiService.getPendingSubmissions();
+  logger.info({ pendingSubmissions }, 'pending submission');
+  if (pendingSubmissions.length === 0) return;
+  const processed = await asyncMap(pendingSubmissions, async (job) => {
+    const isResolved = await pingDoi(job.uniqueDoi);
+    if (isResolved) {
+      await doiService.onRegistrationSuccessful(job);
+      discordNotify({
+        channel: DiscordChannel.DoiMinting,
+        title: 'DOI Registration ✅',
+        type: DiscordNotifyType.SUCCESS,
+        message: `DOI: https://doi.org/${job.uniqueDoi}
+        DPID: ${job.dpid}`,
+      });
+    }
+    return { doi: job.uniqueDoi, jobId: job.id, isResolved };
+  });
+  logger.trace({ processed }, 'Exiting Job with results');
+};
+
+export const SubmissionQueueJob = new CronJob(
+  // schedule cron to run every hour
+  // '*/10 * * * * *', // 10 seconds (for local test)
+  '0 * * * * *', // 1 hour
+  onTick, // onTick
+  null, // onComplete
+  false, // start
+);
diff --git a/desci-server/yarn.lock b/desci-server/yarn.lock
index c45cfcd68..7ed941906 100644
--- a/desci-server/yarn.lock
+++ b/desci-server/yarn.lock
@@ -7448,6 +7448,11 @@
   resolved "https://registry.yarnpkg.com/@types/lodash/-/lodash-4.17.0.tgz#d774355e41f372d5350a4d0714abb48194a489c3"
   integrity sha512-t7dhREVv6dbNj0q17X12j7yDG4bD/DHYX7o5/DbDxobP0HnGPgpRz2Ej77aL7TZT3DSw13fqUTj8J4mMnqa7WA==
 
+"@types/luxon@~3.4.0":
+  version "3.4.2"
+  resolved "https://registry.yarnpkg.com/@types/luxon/-/luxon-3.4.2.tgz#e4fc7214a420173cea47739c33cdf10874694db7"
+  integrity sha512-TifLZlFudklWlMBfhubvgqTXRzLDI5pCbGa4P8a3wPyUQSW+1xQ5eDsreP9DWHX3tjq1ke96uYG/nwundroWcA==
+
 "@types/memcached@^2.2.6":
   version "2.2.10"
   resolved "https://registry.yarnpkg.com/@types/memcached/-/memcached-2.2.10.tgz#113f9e3a451d6b5e0a3822e06d9feb52e63e954a"
@@ -9734,6 +9739,14 @@ cron-parser@^4.0.0:
   dependencies:
     luxon "^3.2.1"
 
+cron@^3.1.7:
+  version "3.1.7"
+  resolved "https://registry.yarnpkg.com/cron/-/cron-3.1.7.tgz#3423d618ba625e78458fff8cb67001672d49ba0d"
+  integrity sha512-tlBg7ARsAMQLzgwqVxy8AZl/qlTc5nibqYwtNGoCrd+cV+ugI+tvZC1oT/8dFH8W455YrywGykx/KMmAqOr7Jw==
+  dependencies:
+    "@types/luxon" "~3.4.0"
+    luxon "~3.4.0"
+
 cross-fetch@^3.1.5:
   version "3.1.8"
   resolved "https://registry.yarnpkg.com/cross-fetch/-/cross-fetch-3.1.8.tgz#0327eba65fd68a7d119f8fb2bf9334a1a7956f82"
@@ -13454,7 +13467,7 @@ lru-cache@^6.0.0:
   resolved "https://registry.yarnpkg.com/lru-cache/-/lru-cache-10.2.0.tgz#0bd445ca57363465900f4d1f9bd8db343a4d95c3"
   integrity sha512-2bIM8x+VAf6JT4bKAljS1qUWgMsqZRPGJS6FSahIMPVvctcNhyVp7AJu7quxOW9jwkryBReKZY5tY5JYv2n/7Q==
 
-luxon@^3.2.1:
+luxon@^3.2.1, luxon@~3.4.0:
   version "3.4.4"
   resolved "https://registry.yarnpkg.com/luxon/-/luxon-3.4.4.tgz#cf20dc27dc532ba41a169c43fdcc0063601577af"
   integrity sha512-zobTr7akeGHnv7eBOXcRgMeCP6+uyYsczwmeRCauvpvaAltgNyTbLH/+VaEAPUeWBT+1GuNmz4wC/6jtQzbbVA==
@@ -16327,16 +16340,7 @@ string-template@~0.2.1:
   resolved "https://registry.yarnpkg.com/string-template/-/string-template-0.2.1.tgz#42932e598a352d01fc22ec3367d9d84eec6c9add"
   integrity sha512-Yptehjogou2xm4UJbxJ4CxgZx12HBfeystp0y3x7s4Dj32ltVVG1Gg8YhKjHZkHicuKpZX/ffilA8505VbUbpw==
 
-"string-width-cjs@npm:string-width@^4.2.0":
-  version "4.2.3"
-  resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
-  integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
-  dependencies:
-    emoji-regex "^8.0.0"
-    is-fullwidth-code-point "^3.0.0"
-    strip-ansi "^6.0.1"
-
-"string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
+"string-width-cjs@npm:string-width@^4.2.0", "string-width@^1.0.2 || 2 || 3 || 4", string-width@^4.1.0, string-width@^4.2.0, string-width@^4.2.3:
   version "4.2.3"
   resolved "https://registry.yarnpkg.com/string-width/-/string-width-4.2.3.tgz#269c7117d27b05ad2e536830a8ec895ef9c6d010"
   integrity sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==
@@ -16409,7 +16413,7 @@ stringify-object@3.3.0:
     is-obj "^1.0.1"
     is-regexp "^1.0.0"
 
-"strip-ansi-cjs@npm:strip-ansi@^6.0.1":
+"strip-ansi-cjs@npm:strip-ansi@^6.0.1", strip-ansi@^6.0.0, strip-ansi@^6.0.1:
   version "6.0.1"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
   integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
@@ -16423,13 +16427,6 @@ strip-ansi@^3.0.0:
   dependencies:
     ansi-regex "^2.0.0"
 
-strip-ansi@^6.0.0, strip-ansi@^6.0.1:
-  version "6.0.1"
-  resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-6.0.1.tgz#9e26c63d30f53443e9489495b2105d37b67a85d9"
-  integrity sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==
-  dependencies:
-    ansi-regex "^5.0.1"
-
 strip-ansi@^7.0.1:
   version "7.1.0"
   resolved "https://registry.yarnpkg.com/strip-ansi/-/strip-ansi-7.1.0.tgz#d5b6568ca689d8561370b0707685d22434faff45"
@@ -17465,7 +17462,7 @@ workerpool@6.2.1:
   resolved "https://registry.yarnpkg.com/workerpool/-/workerpool-6.2.1.tgz#46fc150c17d826b86a008e5a4508656777e9c343"
   integrity sha512-ILEIE97kDZvF9Wb9f6h5aXK4swSlKGUcOEGiIYb2OOu/IrDU9iwj0fD//SsA6E5ibwJxpEvhullJY4Sl4GcpAw==
 
-"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0":
+"wrap-ansi-cjs@npm:wrap-ansi@^7.0.0", wrap-ansi@^7.0.0:
   version "7.0.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
   integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
@@ -17483,15 +17480,6 @@ wrap-ansi@^6.2.0:
     string-width "^4.1.0"
     strip-ansi "^6.0.0"
 
-wrap-ansi@^7.0.0:
-  version "7.0.0"
-  resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-7.0.0.tgz#67e145cff510a6a6984bdf1152911d69d2eb9e43"
-  integrity sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==
-  dependencies:
-    ansi-styles "^4.0.0"
-    string-width "^4.1.0"
-    strip-ansi "^6.0.0"
-
 wrap-ansi@^8.1.0:
   version "8.1.0"
   resolved "https://registry.yarnpkg.com/wrap-ansi/-/wrap-ansi-8.1.0.tgz#56dc22368ee570face1b49819975d9b9a5ead214"