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@varl and I discussed this and think we've outlined a solution. We'll move all runtime dependencies out of the shell and into the cli (d2-app-scripts), mimicking what react-scripts does, which should allow app source, app dependencies, and the shell itself to resolve identical dependencies.
Application dependencies aren't deduplicated with shell dependencies since #187, which can lead to duplicates in the bundle and React Hooks issues.
(credit @edoardo for pointing this out)
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