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env-reporting.yml is the largest and most complex conda environment we have in charcoal, and it pins a lot of things... and it's pretty out of date. this is causing trouble in #225 where we need to upgrade the minimum python version which changed to > 3.7 for the latest sourmash.
The text was updated successfully, but these errors were encountered:
ya that environment has been a pain for me too. @bluegenes seemed to think it would be a light lift to use the snakemake jupyter notebooks run feature instead of papermill, but I think we decided not to go for it because it was like 5 minutes before this was due to be presented at ISMB.
env-reporting.yml is the largest and most complex conda environment we have in charcoal, and it pins a lot of things... and it's pretty out of date. this is causing trouble in #225 where we need to upgrade the minimum python version which changed to > 3.7 for the latest sourmash.
The text was updated successfully, but these errors were encountered: