strelka.ini.wgs

[user]
isSkipDepthFilters = 0
maxInputDepth = 10000
depthFilterMultiple = 3.0
snvMaxFilteredBasecallFrac = 0.4
snvMaxSpanningDeletionFrac = 0.75
indelMaxRefRepeat = 8
indelMaxWindowFilteredBasecallFrac = 0.3
indelMaxIntHpolLength = 14
ssnvPrior = 0.000001
sindelPrior = 0.000001
ssnvNoise = 0.0000005
sindelNoise = 0.000001
ssnvNoiseStrandBiasFrac = 0.5
minTier1Mapq = 20
minTier2Mapq = 5
ssnvQuality_LowerBound = 15
sindelQuality_LowerBound = 30
isWriteRealignedBam = 0
binSize = 25000000