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ding-lab / somaticwrapper Public

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somaticwrapper

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work_log_run_htan_brca

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4 lines (1 loc) · 328 Bytes

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somaticwrapper

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work_log_run_htan_brca

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4 lines (1 loc) · 328 Bytes

1

perl somaticwrapper.pl --rdir /gscmnt/gc2521/dinglab/austins2/htan_breast/SW/input2 --log /gscmnt/gc2521/dinglab/austins2/htan_breast/SW/log --ref /gscmnt/gc7202/dinglab/common/Reference/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --smg /gscmnt/gc2521/dinglab/austins2/tools/SMG/smg_Bailey_BRCA.tsv --q research-hpc --step 1

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