diff --git a/docs/en/reference/configuration.rst b/docs/en/reference/configuration.rst
index d451c1ac3..7b92c7520 100644
--- a/docs/en/reference/configuration.rst
+++ b/docs/en/reference/configuration.rst
@@ -348,17 +348,21 @@ Now update your ``cli-config.php`` in the root of your project to look like the
     require 'vendor/autoload.php';
 
     use Doctrine\ORM\EntityManager;
-    use Doctrine\ORM\Tools\Setup;
+    use Doctrine\ORM\ORMSetup;
     use Doctrine\Migrations\Configuration\EntityManager\ExistingEntityManager;
     use Doctrine\Migrations\DependencyFactory;
+    use Doctrine\Migrations\Configuration\Migration\PhpFile;
+    use Doctrine\DBAL\DriverManager;
 
     $config = new PhpFile('migrations.php'); // Or use one of the Doctrine\Migrations\Configuration\Configuration\* loaders
 
     $paths = [__DIR__.'/lib/MyProject/Entities'];
     $isDevMode = true;
 
-    $ORMconfig = Setup::createAnnotationMetadataConfiguration($paths, $isDevMode);
-    $entityManager = EntityManager::create(['driver' => 'pdo_sqlite', 'memory' => true], $ORMconfig);
+    $ORMConfig = ORMSetup::createAttributeMetadataConfiguration($paths, $isDevMode);
+    $connection = DriverManager::getConnection(['driver' => 'pdo_sqlite', 'memory' => true]);
+
+    $entityManager = new EntityManager($connection, $ORMConfig);
 
     return DependencyFactory::fromEntityManager($config, new ExistingEntityManager($entityManager));
 
diff --git a/lib/Doctrine/Migrations/Tools/Console/Command/MigrateCommand.php b/lib/Doctrine/Migrations/Tools/Console/Command/MigrateCommand.php
index 76576724f..2084b6f6e 100644
--- a/lib/Doctrine/Migrations/Tools/Console/Command/MigrateCommand.php
+++ b/lib/Doctrine/Migrations/Tools/Console/Command/MigrateCommand.php
@@ -8,6 +8,7 @@
 use Doctrine\Migrations\Exception\NoMigrationsToExecute;
 use Doctrine\Migrations\Exception\UnknownMigrationVersion;
 use Doctrine\Migrations\Metadata\ExecutedMigrationsList;
+use Doctrine\Migrations\Tools\Console\ConsoleInputMigratorConfigurationFactory;
 use Symfony\Component\Console\Attribute\AsCommand;
 use Symfony\Component\Console\Formatter\OutputFormatter;
 use Symfony\Component\Console\Input\InputArgument;
@@ -78,7 +79,7 @@ protected function configure(): void
                 null,
                 InputOption::VALUE_OPTIONAL,
                 'Wrap the entire migration in a transaction.',
-                'notprovided',
+                ConsoleInputMigratorConfigurationFactory::ABSENT_CONFIG_VALUE,
             )
             ->setHelp(<<<'EOT'
 The <info>%command.name%</info> command executes a migration to a specified version or the latest available version:
diff --git a/lib/Doctrine/Migrations/Tools/Console/ConsoleInputMigratorConfigurationFactory.php b/lib/Doctrine/Migrations/Tools/Console/ConsoleInputMigratorConfigurationFactory.php
index d3673a2e2..fffc450ba 100644
--- a/lib/Doctrine/Migrations/Tools/Console/ConsoleInputMigratorConfigurationFactory.php
+++ b/lib/Doctrine/Migrations/Tools/Console/ConsoleInputMigratorConfigurationFactory.php
@@ -11,6 +11,8 @@
 
 class ConsoleInputMigratorConfigurationFactory implements MigratorConfigurationFactory
 {
+    public const ABSENT_CONFIG_VALUE = 'notprovided';
+
     public function __construct(private readonly Configuration $configuration)
     {
     }
@@ -36,7 +38,7 @@ private function determineAllOrNothingValueFrom(InputInterface $input): bool|nul
             $allOrNothingOption = $input->getOption('all-or-nothing');
         }
 
-        if ($wasOptionExplicitlyPassed && $allOrNothingOption !== null) {
+        if ($wasOptionExplicitlyPassed && ($allOrNothingOption !== null && $allOrNothingOption !== self::ABSENT_CONFIG_VALUE)) {
             Deprecation::trigger(
                 'doctrine/migrations',
                 'https://github.com/doctrine/migrations/issues/1304',
@@ -49,10 +51,10 @@ private function determineAllOrNothingValueFrom(InputInterface $input): bool|nul
             );
         }
 
-        if ($allOrNothingOption === 'notprovided') {
-            return null;
-        }
-
-        return (bool) ($allOrNothingOption ?? false);
+        return match ($allOrNothingOption) {
+            self::ABSENT_CONFIG_VALUE => null,
+            null => false,
+            default => (bool) $allOrNothingOption,
+        };
     }
 }
diff --git a/tests/Doctrine/Migrations/Tests/Tools/Console/Command/MigrateCommandTest.php b/tests/Doctrine/Migrations/Tests/Tools/Console/Command/MigrateCommandTest.php
index d0dd54da3..dd3876f71 100644
--- a/tests/Doctrine/Migrations/Tests/Tools/Console/Command/MigrateCommandTest.php
+++ b/tests/Doctrine/Migrations/Tests/Tools/Console/Command/MigrateCommandTest.php
@@ -358,11 +358,10 @@ public function testExecuteMigrateAllOrNothing(bool $default, array $input, bool
                 return ['A'];
             });
 
-        if ($expectDeprecation) {
-            $this->expectDeprecationWithIdentifier(
-                'https://github.com/doctrine/migrations/issues/1304',
-            );
-        }
+        match ($expectDeprecation) {
+            true => $this->expectDeprecationWithIdentifier('https://github.com/doctrine/migrations/issues/1304'),
+            false => $this->expectNoDeprecationWithIdentifier('https://github.com/doctrine/migrations/issues/1304'),
+        };
 
         $this->migrateCommandTester->execute(
             $input,
@@ -388,8 +387,8 @@ public static function allOrNothing(): Generator
         yield [true, ['--all-or-nothing' => 0], false];
         yield [true, ['--all-or-nothing' => '0'], false];
 
-        yield [true, [], true];
-        yield [false, [], false];
+        yield [true, [], true, false];
+        yield [false, [], false, false];
     }
 
     public function testExecuteMigrateCancelExecutedUnavailableMigrations(): void