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SGE profiles with snakmake 8... #9

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msabrysarhan opened this issue Apr 24, 2024 · 0 comments
Open

SGE profiles with snakmake 8... #9

msabrysarhan opened this issue Apr 24, 2024 · 0 comments

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@msabrysarhan
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I'm having an issue setting up a SGE profile with snakemake 8.10.0. I tried to use the executor flag but i couldn't set it to qsub or sge.

I get this error:
snakemake: error: unrecognized arguments: --cluster=qsub --sge-submit=sge/sge-submit.py --sge-status=sge/sge-status.py --sge-cancel=sge/sge-cancel.py

I also couldn't find official docs to set that up.

Thanks for your help!

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