Dockerfile_deb12_pyjeo

#This dockerfile will create a docker image with a user and python environment
#with pyjeo installed
#user and group settings can be set from host by setting --build-arg, e.g.,
#docker build --build-arg user=$(id -u -n) \
#             --build-arg group=$(id -g -n) \
#             --build-arg uid=$(id -u) \
#             --build-arg gid=$(id -g) \
#             --build-arg http_proxy=${http_proxy} \
#             --build-arg https_proxy=${https_proxy} \
#             -t deb12_pyjeo_public -f Dockerfile_deb12_pyjeo_public . 

FROM debian:bookworm as pyjeo-base

LABEL project="pyjeo" \
      author="Pieter Kempeneers" \
      image_name="deb12_pyjeo_base" \
      version="1.1.8" \
      released="2024-04-15" \
      software_versions="Debian:12 Python:3.11.2 gdal:3.7.1 miallib:1.1.6 jiplib:1.1.5 pyjeo:1.1.11"\
      description="multi-stage build for pyjeo"

#
# Environment variables for proxy, user, paths
#

#optional: add proxy settings here
ARG http_proxy=${http_proxy}
ARG https_proxy=${https_proxy}
ENV http_proxy=${http_proxy}
ENV https_proxy=${https_proxy}
#
ARG user=${user}
ARG group=${group}
ARG uid=${uid}
ARG gid=${gid}
ENV user=${user}
ENV group=${group}
ENV uid=${uid}
ENV gid=${gid}

ARG INSTALL_HOME=/home/${user}
ARG VIRTUAL_ENV=/home/${user}/venv
ENV INSTALL_HOME=${INSTALL_HOME}
ENV VIRTUAL_ENV=${VIRTUAL_ENV}

#
# Create user
#

RUN groupadd -g ${gid} ${group} \
    && useradd -u ${uid} -g ${group} -s /bin/bash -m ${user}

#
#Install dependences from the Debian repository
#

RUN apt-get update \
  && apt-get upgrade -y \
  && DEBIAN_FRONTEND=noninteractive  apt-get install -y  --no-install-recommends \
    apt-utils \
    python3 \
    python3-numpy \
    python3-wheel \
    python3-pip \
    sqlite3 \
    zlib1g \
    python3-virtualenv \
    python3-dev \
    libjsoncpp-dev \
    libgdal-dev \
    zlib1g-dev \
    libopenblas-dev \
    libgeotiff-dev \
    libgsl0-dev \
    libfann-dev \
    libfftw3-dev \
    libshp-dev \
    uthash-dev \
    libboost-serialization-dev \
    libboost-filesystem-dev \
  && rm -rf /var/lib/apt/lists/*

FROM pyjeo-base AS pyjeo-build
  
#
#Install dependences from the Debian repository
#

RUN apt-get update \
  && DEBIAN_FRONTEND=noninteractive  apt-get install -y  --no-install-recommends \
    build-essential \
    cmake \
    pkg-config \
    make \
    python3-setuptools \
    swig \
    libtool \
    curl \
    git \
    gzip \
    tar \
    unzip \
  && rm -rf /var/lib/apt/lists/*

USER ${uid}:${gid}

#
# Compile and build miallib dependency library
#  

RUN curl -L --output $INSTALL_HOME/miallib.tar.gz https://github.com/ec-jrc/jeolib-miallib/archive/refs/tags/v1.1.6.tar.gz --verbose
#RUN curl -L --output $INSTALL_HOME/miallib.tar.gz https://github.com/ec-jrc/jeolib-miallib/archive/refs/heads/master.tar.gz --verbose

RUN set -xe \
    && cd $INSTALL_HOME \
    && mkdir ${INSTALL_HOME}/miallib \
    && tar xzvf miallib.tar.gz \
    && cd $INSTALL_HOME/jeolib-miallib* \
    && mkdir build \
    && cd build \
    && cmake -DCMAKE_INSTALL_PREFIX=${INSTALL_HOME}/miallib .. \
    && cmake --build . \
    && cmake --install . \
    && cd $INSTALL_HOME \
    && rm miallib.tar.gz \
    && rm -rf $INSTALL_HOME/jeolib-miallib*

#
# Compile and build jiplib dependency library
#  

RUN curl -L --output $INSTALL_HOME/jiplib.tar.gz https://github.com/ec-jrc/jeolib-jiplib/archive/refs/tags/v1.1.5.tar.gz --verbose
#RUN curl -L --output $INSTALL_HOME/jiplib.tar.gz https://github.com/ec-jrc/jeolib-jiplib/archive/refs/heads/master.tar.gz --verbose

RUN set -xe \
    && cd $INSTALL_HOME \
    && tar xzvf jiplib.tar.gz \
    && cd $INSTALL_HOME/jeolib-jiplib* \
    && mkdir build \
    && cd build \
    && cmake -DCMAKE_PREFIX_PATH=${INSTALL_HOME}/miallib .. \
    && cmake --build . \
    && cp jiplib-*.whl $INSTALL_HOME \
    && cd $INSTALL_HOME \
    && rm -rf ${INSTALL_HOME}/miallib \
    && rm jiplib.tar.gz \
    && rm -rf $INSTALL_HOME/jeolib-jiplib*

RUN curl -L --output $INSTALL_HOME/pyjeo.tar.gz https://github.com/ec-jrc/jeolib-pyjeo/archive/refs/tags/v1.1.11.tar.gz --verbose
#RUN curl -L --output $INSTALL_HOME/pyjeo.tar.gz https://github.com/ec-jrc/jeolib-pyjeo/archive/refs/heads/master.tar.gz --verbose

RUN cd $INSTALL_HOME \
    && tar xzvf pyjeo.tar.gz \
    && cd jeolib-pyjeo* \
    && pip3 wheel . \
    && cp pyjeo-*.whl $INSTALL_HOME \
    && cd $INSTALL_HOME \
    && rm -rf jeolib-pyjeo* \
    && rm pyjeo.tar.gz

FROM pyjeo-base AS pyjeo

USER ${uid}:${gid}

COPY --from=pyjeo-build ${INSTALL_HOME} ${INSTALL_HOME}

#
# Install python libraries in virtual environment as user
#
RUN mkdir ${VIRTUAL_ENV} \
    && virtualenv ${VIRTUAL_ENV}/pyjeo \
    && . ${VIRTUAL_ENV}/pyjeo/bin/activate \
    && pip install ${INSTALL_HOME}/jiplib-*.whl \
    && pip install ${INSTALL_HOME}/pyjeo-*.whl

ENV PATH="$VIRTUAL_ENV/pyjeo/bin:$PATH"