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blastnSettingsDialog.h
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blastnSettingsDialog.h
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// Copyright 2012 Egor Dolzhenko
//
// This file is a part of STAGR.
//
// STAGR is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
#ifndef BLASTNSETTINGSDIALOG_H
#define BLASTNSETTINGSDIALOG_H
#include <QDialog>
class QPushButton;
class QComboBox;
class QCheckBox;
class QLineEdit;
class BlastnSettingsDialog : public QDialog
{
Q_OBJECT
public:
BlastnSettingsDialog(QWidget *parent);
QStringList blastSettingsPatrameterString(QString queryFilename, QString referenceFilename);
private:
QPushButton *okButton;
QComboBox *wordsizeComboBox;
QComboBox *matchscoreComboBox;
QComboBox *mismatchscoreComboBox;
QComboBox *openComboBox;
QComboBox *extensionComboBox;
QCheckBox *dustCheckBox;
QCheckBox *gappedAlignment;
QLineEdit *identityLineEdit;
QLineEdit *expectedvalueLineEdit;
void setDefaults();
private slots:
void okPushed();
void cancelPushed();
void updateExtensionComboBox(int index);
void updateMismatchComboBox(int index);
};
#endif //BLASTNSETTINGSDIALOG_H