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  1. NCBI-Hackathons/NovoGraph NCBI-Hackathons/NovoGraph Public

    NovoGraph: building whole genome graphs from long-read-based de novo assemblies

    Perl 45 8

  2. kharchenkolab/conos kharchenkolab/conos Public

    R package for the joint analysis of multiple single-cell RNA-seq datasets

    R 202 39

  3. kharchenkolab/pagoda2 kharchenkolab/pagoda2 Public

    R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

    JavaScript 214 47

  4. edlibR edlibR Public

    R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).

    C++ 11 2

  5. kharchenkolab/numbat kharchenkolab/numbat Public

    Haplotype-aware CNV analysis from single-cell RNA-seq

    R 170 23

  6. kharchenkolab/N2R kharchenkolab/N2R Public

    R extensions to N2 implementing approximate nearest neighbor search methods

    C++ 10 3