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MultiQC Version 0.6
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@ewels ewels released this 29 Apr 10:36
v0.6
6ce07e7

Date released: 2016-04-29

Key highlights in this report are new plot types! Beeswarm and generalised tables. Three new modules, a major internal code refactoring around plotting and tables (now easier to understand, maintain and add to) and a whole swath of other minor module updates, new functions and features..

Changelog:

  • New Salmon module.
  • New Trimmomatic module.
  • New Bamtools stats module.
  • New beeswarm plot type. General Stats table replaced with this when many samples in report.
  • New RSeQC module: Actually a suite of 8 new modules supporting various outputs from RSeQC
  • Rewrote bowtie2 module: Now better at parsing logs and tries to scrape input from wrapper logs.
  • Made cutadapt show counts by default instead of obs/exp
  • Dynamic plots now update their labels properly when changing datasets and to percentages
  • Config files now loaded from working directory if present
  • Started new docs describing how each module works
  • Refactored featureCounts module. Now handles summaries describing multiple samples.
  • Stopped using so many hidden files. .multiqc.log now called multiqc.log
  • New -c/--config command line option to specify a MultiQC configuration file
  • Can now load run-specific config files called multiqc_config.yaml in working directory
  • Large code refactoring - moved plotting code out of BaseModule and into new multiqc.plots submodules
  • Generalised code used to generate the General Stats table so that it can be used by modules
  • Removed interactive report tour, replaced with a link to a youtube tutorial
  • Made it possible to permanently hide the blue welcome message for all future reports
  • New option to smooth data for line plots. Avoids mega-huge plots. Applied to SnpEff, RSeQC, Picard.
  • Added percentage view to Picard insert size plot
  • Bugfix: Qualimap handles infinity symbol (thanks @chapmanb )
  • Bugfix: Made SnpEff less fussy about required fields for making plots
  • Bufgix: UTF-8 file paths handled properly in Py2.7+
  • Bugfix: Extending two config variables wasn't working. Now fixed.
  • Bugfix: Dragging the height bar of plots now works again.
  • Bugfix: Plots now properly change y axis limits and labels when changing datasets
  • Bugfix: Flat plots now have correct path in default_dev template
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