Cannot specify link libraries for target "CUDA::nvptxcompiler_static" when build from source.

[NguyenVanThanhHust]

Summary

When I build faiss from source, I meet below error, how can I fix it?

Platform

OS: Ubuntu 20.04, run in docker: nvcr.io/nvidia/tensorrt : 21.08-py3
Cuda on OS: 12.0, cuda inside docker: 11.4

Faiss version: 4ee67aefc21859e02388f32f4876a0cbd21cabd

Installed from: compliled from source

Faiss compilation options: use openblass with cmd: cmake -B build .

Running on:

• CPU
• GPU

Interface:

• C++
• Python

Reproduction instructions

inside docker container:
Installl openblas

apt-get install libopenblas-dev

clone and run cmd in cloned folder:

cmake -B build .

Logs:

-- Could NOT find MKL (missing: MKL_LIBRARIES) 
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libopenblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib/x86_64-linux-gnu/libopenblas.so;-lpthread;-lm;-ldl  
-- Found CUDAToolkit: /usr/local/cuda/include (found version "11.4.100") 
CMake Error at /usr/local/lib/python3.8/dist-packages/cmake/data/share/cmake-3.25/Modules/FindCUDAToolkit.cmake:1063 (target_link_libraries):
  Cannot specify link libraries for target "CUDA::nvptxcompiler_static" which
  is not built by this project.
Call Stack (most recent call first):
  faiss/gpu/CMakeLists.txt:180 (find_package)


-- Configuring incomplete, errors occurred!
See also "/opt/faiss/build/CMakeFiles/CMakeOutput.log".
See also "/opt/faiss/build/CMakeFiles/CMakeError.log".

In /opt/faiss/build/CMakeFiles/CMakeError.log:

Performing C++ SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD failed with the following output:
Change Dir: /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-MxbOpg

Run Build Command(s):/usr/bin/make -f Makefile cmTC_d9ea7/fast && /usr/bin/make  -f CMakeFiles/cmTC_d9ea7.dir/build.make CMakeFiles/cmTC_d9ea7.dir/build
make[1]: Entering directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-MxbOpg'
Building CXX object CMakeFiles/cmTC_d9ea7.dir/src.cxx.o
/usr/bin/c++ -DCMAKE_HAVE_LIBC_PTHREAD  -std=gnu++11 -o CMakeFiles/cmTC_d9ea7.dir/src.cxx.o -c /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-MxbOpg/src.cxx
Linking CXX executable cmTC_d9ea7
/usr/local/lib/python3.8/dist-packages/cmake/data/bin/cmake -E cmake_link_script CMakeFiles/cmTC_d9ea7.dir/link.txt --verbose=1
/usr/bin/c++ CMakeFiles/cmTC_d9ea7.dir/src.cxx.o -o cmTC_d9ea7
/usr/bin/ld: CMakeFiles/cmTC_d9ea7.dir/src.cxx.o: in function `main':
src.cxx:(.text+0x46): undefined reference to `pthread_create'
/usr/bin/ld: src.cxx:(.text+0x52): undefined reference to `pthread_detach'
/usr/bin/ld: src.cxx:(.text+0x5e): undefined reference to `pthread_cancel'
/usr/bin/ld: src.cxx:(.text+0x6f): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
make[1]: *** [CMakeFiles/cmTC_d9ea7.dir/build.make:99: cmTC_d9ea7] Error 1
make[1]: Leaving directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-MxbOpg'
make: *** [Makefile:127: cmTC_d9ea7/fast] Error 2


Source file was:
#include <pthread.h>

static void* test_func(void* data)
{
  return data;
}

int main(void)
{
  pthread_t thread;
  pthread_create(&thread, NULL, test_func, NULL);
  pthread_detach(thread);
  pthread_cancel(thread);
  pthread_join(thread, NULL);
  pthread_atfork(NULL, NULL, NULL);
  pthread_exit(NULL);

  return 0;
}

Determining if the function pthread_create exists in the pthreads failed with the following output:
Change Dir: /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-RCuhqj

Run Build Command(s):/usr/bin/make -f Makefile cmTC_c4543/fast && /usr/bin/make  -f CMakeFiles/cmTC_c4543.dir/build.make CMakeFiles/cmTC_c4543.dir/build
make[1]: Entering directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-RCuhqj'
Building CXX object CMakeFiles/cmTC_c4543.dir/CheckFunctionExists.cxx.o
/usr/bin/c++   -DCHECK_FUNCTION_EXISTS=pthread_create -std=gnu++11 -o CMakeFiles/cmTC_c4543.dir/CheckFunctionExists.cxx.o -c /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-RCuhqj/CheckFunctionExists.cxx
Linking CXX executable cmTC_c4543
/usr/local/lib/python3.8/dist-packages/cmake/data/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c4543.dir/link.txt --verbose=1
/usr/bin/c++  -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTC_c4543.dir/CheckFunctionExists.cxx.o -o cmTC_c4543  -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[1]: *** [CMakeFiles/cmTC_c4543.dir/build.make:99: cmTC_c4543] Error 1
make[1]: Leaving directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-RCuhqj'
make: *** [Makefile:127: cmTC_c4543/fast] Error 2



Determining if the function sgemm_ exists failed with the following output:
Change Dir: /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-7EpCNh

Run Build Command(s):/usr/bin/make -f Makefile cmTC_33a0f/fast && /usr/bin/make  -f CMakeFiles/cmTC_33a0f.dir/build.make CMakeFiles/cmTC_33a0f.dir/build
make[1]: Entering directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-7EpCNh'
Building CXX object CMakeFiles/cmTC_33a0f.dir/CheckFunctionExists.cxx.o
/usr/bin/c++   -DCHECK_FUNCTION_EXISTS=sgemm_ -std=gnu++11 -o CMakeFiles/cmTC_33a0f.dir/CheckFunctionExists.cxx.o -c /opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-7EpCNh/CheckFunctionExists.cxx
Linking CXX executable cmTC_33a0f
/usr/local/lib/python3.8/dist-packages/cmake/data/bin/cmake -E cmake_link_script CMakeFiles/cmTC_33a0f.dir/link.txt --verbose=1
/usr/bin/c++  -DCHECK_FUNCTION_EXISTS=sgemm_ CMakeFiles/cmTC_33a0f.dir/CheckFunctionExists.cxx.o -o cmTC_33a0f
/usr/bin/ld: CMakeFiles/cmTC_33a0f.dir/CheckFunctionExists.cxx.o: in function `main':
CheckFunctionExists.cxx:(.text+0x14): undefined reference to `sgemm_'
collect2: error: ld returned 1 exit status
make[1]: *** [CMakeFiles/cmTC_33a0f.dir/build.make:99: cmTC_33a0f] Error 1
make[1]: Leaving directory '/opt/faiss/build/CMakeFiles/CMakeScratch/TryCompile-7EpCNh'
make: *** [Makefile:127: cmTC_33a0f/fast] Error 2