sqlite error in "Determining locus presence in multiple genomes" step of Tutorial IV

[kautumn]

I'm using my own genomes and following Tutorial IV on a Linux server. I have MAPPING.bam.sort.merge.strip.bed files for each genome and have made bed-files.conf.

When I run the

> phyluce_probe_get_multi_merge_table \ --conf bed-files.conf \ --base-taxon triCas1 \ --output coleoptera-to-triCas1.sqlite

code (replacing the base taxon and output with identifiers relevant to my data), I get this error:

2024-02-22 15:42:27,856 - phyluce_probe_get_multi_merge_table - INFO - Creating database Traceback (most recent call last): File "/home/kautumn/mambaforge/envs/phyluce-1.7.3/bin/phyluce_probe_get_multi_merge_table", line 147, in <module> main() File "/home/kautumn/mambaforge/envs/phyluce-1.7.3/bin/phyluce_probe_get_multi_merge_table", line 129, in main conn, c = create_match_database(args.output, organisms, args.base_taxon) File "/home/kautumn/mambaforge/envs/phyluce-1.7.3/bin/phyluce_probe_get_multi_merge_table", line 85, in create_match_database c.execute(query) sqlite3.OperationalError: near "-": syntax error

I can call sqlite3 successfully from the command line.

Here's what the first few lines of one of my MAPPING.bam.sort.merge.strip.bed files looks like:

NODE_10017_length_1217_cov_2.867890 0 1217 NODE_1002_length_13248_cov_2.814572 6 342 NODE_1002_length_13248_cov_2.814572 485 13234 NODE_10040_length_1215_cov_2.829963 0 1215 NODE_10041_length_1215_cov_2.795956 0 1215

Thank you, I really appreciate any help I can get!