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There is a error in processing the drug analysis when I run runDREEP using DREEP R package.
data <- gficf(M=dat,verbose = T) # dat is a count matrix
dreep.data <- DREEP::runDREEP(M = data$gficf,cores=4,
n.markers = 500,
gsea = "simple",
gpds.signatures = c("CTRP2","GDSC"))
Process massage is as follows:
10:44:43 Loading GPDS signatures..
processing [========================] 2/2 (100%) [eta: 0s]
10:44:44 Extracting top scoring genes from each cell..
processing [========================] 5/5 (100%) [eta: 0s]
10:44:53 Running DREEP...
Error massage is as follows:
Error in checkForRemoteErrors(val):
4 nodes produced errors; first error: argument specifying columns received non-existing column(s): cols[1]='pathway'
the data$gficf is process from the seurat object, which is a count matrix (row is cells, column is genes). The data (dat) form is as follows:
And the data of data$gficf is composed of (as follows):
I don't know how to check for errors, what's wrong with that??
Is it because of the lack of column names in the data$gficf?
Looking forward to your reply~ Thx... T_T
The text was updated successfully, but these errors were encountered:
There is a error in processing the drug analysis when I run runDREEP using DREEP R package.
Process massage is as follows:
Error massage is as follows:
the data$gficf is process from the seurat object, which is a count matrix (row is cells, column is genes). The data (dat) form is as follows:
And the data of data$gficf is composed of (as follows):
I don't know how to check for errors, what's wrong with that??
Is it because of the lack of column names in the data$gficf?
Looking forward to your reply~ Thx... T_T
The text was updated successfully, but these errors were encountered: