diff --git a/lib/analyze.js b/lib/analyze.js
index a5410a6d29..a6fec655f7 100644
--- a/lib/analyze.js
+++ b/lib/analyze.js
@@ -29,6 +29,7 @@ const codeql_1 = require("./codeql");
 const count_loc_1 = require("./count-loc");
 const languages_1 = require("./languages");
 const sharedEnv = __importStar(require("./shared-environment"));
+const tracer_config_1 = require("./tracer-config");
 const util = __importStar(require("./util"));
 class CodeQLAnalysisError extends Error {
     constructor(queriesStatusReport, message) {
@@ -232,8 +233,15 @@ function packWithVersionToQuerySuiteEntry(pack) {
     return text;
 }
 async function runFinalize(outputDir, threadsFlag, memoryFlag, config, logger) {
-    // Delete the tracer config env var to avoid tracing ourselves
-    delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+    const codeql = await (0, codeql_1.getCodeQL)(config.codeQLCmd);
+    if (await util.codeQlVersionAbove(codeql, codeql_1.CODEQL_VERSION_NEW_TRACING)) {
+        // Delete variables as specified by the end-tracing script
+        await (0, tracer_config_1.endTracingForCluster)(config);
+    }
+    else {
+        // Delete the tracer config env var to avoid tracing ourselves
+        delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+    }
     fs.mkdirSync(outputDir, { recursive: true });
     await finalizeDatabaseCreation(config, threadsFlag, memoryFlag, logger);
 }
diff --git a/lib/analyze.js.map b/lib/analyze.js.map
index a2d05d9945..a7d3e5289f 100644
--- a/lib/analyze.js.map
+++ b/lib/analyze.js.map
@@ -1 +1 @@
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\ No newline at end of file
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\ No newline at end of file
diff --git a/lib/tracer-config.js b/lib/tracer-config.js
index 04e090620f..45e3d97c46 100644
--- a/lib/tracer-config.js
+++ b/lib/tracer-config.js
@@ -19,7 +19,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getCombinedTracerConfig = exports.concatTracerConfigs = exports.getTracerConfigForLanguage = exports.getTracerConfigForCluster = void 0;
+exports.getCombinedTracerConfig = exports.concatTracerConfigs = exports.getTracerConfigForLanguage = exports.getTracerConfigForCluster = exports.endTracingForCluster = void 0;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const codeql_1 = require("./codeql");
@@ -33,6 +33,21 @@ const CRITICAL_TRACER_VARS = new Set([
     "SEMMLE_DEPTRACE_SOCKET",
     "SEMMLE_JAVA_TOOL_OPTIONS",
 ]);
+async function endTracingForCluster(config) {
+    // If there are no traced languages, we don't need to do anything.
+    if (!config.languages.some(languages_1.isTracedLanguage))
+        return;
+    const endTracingEnvVariables = JSON.parse(fs.readFileSync(path.resolve(config.dbLocation, "temp/tracingEnvironment/end-tracing.json"), "utf8"));
+    for (const [key, value] of Object.entries(endTracingEnvVariables)) {
+        if (value !== undefined) {
+            process.env[key] = value;
+        }
+        else {
+            delete process.env[key];
+        }
+    }
+}
+exports.endTracingForCluster = endTracingForCluster;
 async function getTracerConfigForCluster(config) {
     const tracingEnvVariables = JSON.parse(fs.readFileSync(path.resolve(config.dbLocation, "temp/tracingEnvironment/start-tracing.json"), "utf8"));
     return {
diff --git a/lib/tracer-config.js.map b/lib/tracer-config.js.map
index f693353292..2ab4854987 100644
--- a/lib/tracer-config.js.map
+++ b/lib/tracer-config.js.map
@@ -1 +1 @@
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\ No newline at end of file
+{"version":3,"file":"tracer-config.js","sourceRoot":"","sources":["../src/tracer-config.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAAA,uCAAyB;AACzB,2CAA6B;AAE7B,qCAA8D;AAE9D,2CAAyD;AACzD,6CAA+B;AAC/B,iCAA4C;AAO5C,MAAM,oBAAoB,GAAG,IAAI,GAAG,CAAC;IACnC,yBAAyB;IACzB,eAAe;IACf,8BAA8B;IAC9B,wBAAwB;IACxB,0BAA0B;CAC3B,CAAC,CAAC;AAEI,KAAK,UAAU,oBAAoB,CACxC,MAA0B;IAE1B,kEAAkE;IAClE,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,4BAAgB,CAAC;QAAE,OAAO;IAErD,MAAM,sBAAsB,GAAoC,IAAI,CAAC,KAAK,CACxE,EAAE,CAAC,YAAY,CACb,IAAI,CAAC,OAAO,CACV,MAAM,CAAC,UAAU,EACjB,0CAA0C,CAC3C,EACD,MAAM,CACP,CACF,CAAC;IACF,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,sBAAsB,CAAC,EAAE;QACjE,IAAI,KAAK,KAAK,SAAS,EAAE;YACvB,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;SAC1B;aAAM;YACL,OAAO,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;SACzB;KACF;AACH,CAAC;AAtBD,oDAsBC;AAEM,KAAK,UAAU,yBAAyB,CAC7C,MAA0B;IAE1B,MAAM,mBAAmB,GAAG,IAAI,CAAC,KAAK,CACpC,EAAE,CAAC,YAAY,CACb,IAAI,CAAC,OAAO,CACV,MAAM,CAAC,UAAU,EACjB,4CAA4C,CAC7C,EACD,MAAM,CACP,CACF,CAAC;IACF,OAAO;QACL,IAAI,EAAE,mBAAmB,CAAC,4BAA4B,CAAC;QACvD,GAAG,EAAE,mBAAmB;KACzB,CAAC;AACJ,CAAC;AAhBD,8DAgBC;AAEM,KAAK,UAAU,0BAA0B,CAC9C,MAAc,EACd,MAA0B,EAC1B,QAAkB;IAElB,MAAM,GAAG,GAAG,MAAM,MAAM,CAAC,YAAY,CACnC,IAAI,CAAC,qBAAqB,CAAC,MAAM,EAAE,QAAQ,CAAC,CAC7C,CAAC;IAEF,MAAM,IAAI,GAAG,GAAG,CAAC,4BAA4B,CAAC,CAAC;IAC/C,MAAM,IAAI,GAAiB,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,CAAC;IAE7C,yDAAyD;IACzD,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE;QACvC,MAAM,GAAG,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACrB,MAAM,KAAK,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QACvB,8DAA8D;QAC9D,IAAI,GAAG,KAAK,4BAA4B,EAAE;YACxC,SAAS;SACV;QACD,wBAAwB;QACxB,IAAI,OAAO,KAAK,KAAK,WAAW,EAAE;YAChC,SAAS;SACV;QACD,mFAAmF;QACnF,iCAAiC;QACjC,IACE,OAAO,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,WAAW;YACvC,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC;YAC7B,GAAG,CAAC,UAAU,CAAC,SAAS,CAAC,EACzB;YACA,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC;SACvB;KACF;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAnCD,gEAmCC;AAED,SAAgB,mBAAmB,CACjC,aAA+C,EAC/C,MAA0B,EAC1B,qBAAqB,GAAG,KAAK;IAE7B,iGAAiG;IACjG,0FAA0F;IAE1F,yBAAyB;IACzB,MAAM,GAAG,GAA8B,EAAE,CAAC;IAC1C,IAAI,eAAe,GAAG,KAAK,CAAC;IAC5B,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,MAAM,CAAC,aAAa,CAAC,EAAE;QAC5C,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE;YACrC,MAAM,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YAClB,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YACnB,gEAAgE;YAChE,IAAI,IAAI,KAAK,8BAA8B,EAAE;gBAC3C,eAAe,GAAG,IAAI,CAAC;aACxB;iBAAM,IAAI,IAAI,IAAI,GAAG,EAAE;gBACtB,IAAI,GAAG,CAAC,IAAI,CAAC,KAAK,KAAK,EAAE;oBACvB,MAAM,KAAK,CACT,gDAAgD,IAAI,KAAK,GAAG,CAAC,IAAI,CAAC,QAAQ,KAAK,EAAE,CAClF,CAAC;iBACH;aACF;iBAAM;gBACL,GAAG,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC;gBAClB,OAAO,IAAI,CAAC,CAAC;aACd;SACF;KACF;IAED,8CAA8C;IAC9C,MAAM,SAAS,GAAG,MAAM,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;IAC7C,MAAM,QAAQ,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IAC1C,yFAAyF;IACzF,IAAI,QAAQ,KAAK,CAAC,CAAC,EAAE;QACnB,MAAM,QAAQ,GAAG,SAAS,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACjD,SAAS,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,SAAS,CAAC,QAAQ,CAAC,CAAC;QACtD,SAAS,CAAC,QAAQ,CAAC,GAAG,QAAQ,CAAC;KAChC;IAED,MAAM,UAAU,GAAa,EAAE,CAAC;IAChC,IAAI,UAAU,GAAG,CAAC,CAAC;IACnB,KAAK,MAAM,IAAI,IAAI,SAAS,EAAE;QAC5B,MAAM,KAAK,GAAG,EAAE;aACb,YAAY,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC;aAC9C,KAAK,CAAC,OAAO,CAAC,CAAC;QAClB,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACrC,UAAU,IAAI,KAAK,CAAC;QACpB,UAAU,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;KACpC;IAED,MAAM,cAAc,GAAG,IAAI,CAAC,OAAO,CACjC,MAAM,CAAC,OAAO,EACd,2BAA2B,CAC5B,CAAC;IACF,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,eAAe,CAAC,CAAC;IAC3D,MAAM,kBAAkB,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,EAAE,eAAe,CAAC,CAAC;IACzE,MAAM,cAAc,GAAG;QACrB,cAAc;QACd,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QACvB,GAAG,UAAU;KACd,CAAC;IAEF,IAAI,eAAe,EAAE;QACnB,GAAG,CAAC,8BAA8B,CAAC,GAAG,kBAAkB,CAAC;QACzD,OAAO,IAAI,CAAC,CAAC;KACd;IAED,EAAE,CAAC,aAAa,CAAC,IAAI,EAAE,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IAElD,IAAI,qBAAqB,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;QACzD,+DAA+D;QAC/D,IAAI,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC7B,MAAM,CAAC,YAAY,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;QAChC,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE;YACnC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YACjB,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YACnB,MAAM,UAAU,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,GAAG,IAAI,KAAK,IAAI,EAAE,MAAM,CAAC,CAAC;YAC5D,MAAM,UAAU,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACnC,UAAU,CAAC,YAAY,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;YAC9C,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,MAAM,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC,CAAC;SAC1D;QACD,0CAA0C;QAC1C,MAAM,OAAO,GAAG,GAAG,IAAI,cAAc,CAAC;QACtC,EAAE,CAAC,aAAa,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;KACnC;IAED,IAAI,qBAAqB,IAAI,OAAO,CAAC,QAAQ,KAAK,OAAO,EAAE;QACzD,kEAAkE;QAClE,IAAI,aAAa,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,MAAM,GAAG,CAAC,CAAC;QACf,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE;YACnC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YACjB,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YACnB,MAAM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\ No newline at end of file
diff --git a/src/analyze.ts b/src/analyze.ts
index ec570d2ba0..3eb3bd28b3 100644
--- a/src/analyze.ts
+++ b/src/analyze.ts
@@ -5,12 +5,17 @@ import * as toolrunner from "@actions/exec/lib/toolrunner";
 import * as yaml from "js-yaml";
 
 import * as analysisPaths from "./analysis-paths";
-import { CODEQL_VERSION_COUNTS_LINES, getCodeQL } from "./codeql";
+import {
+  CODEQL_VERSION_COUNTS_LINES,
+  CODEQL_VERSION_NEW_TRACING,
+  getCodeQL,
+} from "./codeql";
 import * as configUtils from "./config-utils";
 import { countLoc } from "./count-loc";
 import { isScannedLanguage, Language } from "./languages";
 import { Logger } from "./logging";
 import * as sharedEnv from "./shared-environment";
+import { endTracingForCluster } from "./tracer-config";
 import * as util from "./util";
 
 export class CodeQLAnalysisError extends Error {
@@ -409,8 +414,14 @@ export async function runFinalize(
   config: configUtils.Config,
   logger: Logger
 ) {
-  // Delete the tracer config env var to avoid tracing ourselves
-  delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+  const codeql = await getCodeQL(config.codeQLCmd);
+  if (await util.codeQlVersionAbove(codeql, CODEQL_VERSION_NEW_TRACING)) {
+    // Delete variables as specified by the end-tracing script
+    await endTracingForCluster(config);
+  } else {
+    // Delete the tracer config env var to avoid tracing ourselves
+    delete process.env[sharedEnv.ODASA_TRACER_CONFIGURATION];
+  }
 
   fs.mkdirSync(outputDir, { recursive: true });
 
diff --git a/src/tracer-config.ts b/src/tracer-config.ts
index 1a3552e618..f7cea4996b 100644
--- a/src/tracer-config.ts
+++ b/src/tracer-config.ts
@@ -20,6 +20,30 @@ const CRITICAL_TRACER_VARS = new Set([
   "SEMMLE_JAVA_TOOL_OPTIONS",
 ]);
 
+export async function endTracingForCluster(
+  config: configUtils.Config
+): Promise<void> {
+  // If there are no traced languages, we don't need to do anything.
+  if (!config.languages.some(isTracedLanguage)) return;
+
+  const endTracingEnvVariables: Map<string, string | undefined> = JSON.parse(
+    fs.readFileSync(
+      path.resolve(
+        config.dbLocation,
+        "temp/tracingEnvironment/end-tracing.json"
+      ),
+      "utf8"
+    )
+  );
+  for (const [key, value] of Object.entries(endTracingEnvVariables)) {
+    if (value !== undefined) {
+      process.env[key] = value;
+    } else {
+      delete process.env[key];
+    }
+  }
+}
+
 export async function getTracerConfigForCluster(
   config: configUtils.Config
 ): Promise<TracerConfig> {